Abundance and diversity of tetracycline resistance genes in soils adjacent to representative swine feedlots in China

Environmental Science and Technology

Volumn 44, Issue 18, 2010, Pages 6933-6939

  Wu, Nan ^a   Qiao, Min ^a   Zhang, Bing ^b   Cheng, Wang Da ^c   Zhu, Yong Guan ^a,d  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

^b SHANDONG AGRICULTURAL UNIVERSITY   (China)

^c Jiaxing Academy of Agricultural Sciences   (China)

^d INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA GENE; BIVARIATE CORRELATIONS; COMMONLY USED; DEGRADATION PRODUCTS; DISEASE TREATMENT; DRY SOIL; EFFLUX PUMPS; ELECTROSPRAY TANDEM MASS SPECTROMETRY; ENZYMATIC MODIFICATION; GROWTH PROMOTION; LC-MS/MS; MOLECULAR TECHNIQUES; ORGANIC MATTER; PHYLOGENETIC ANALYSIS; QUANTITATIVE REAL TIME PCR; RESISTANCE GENES; RIBOSOMAL PROTECTION; RRNA GENES; SOIL SAMPLE; SWINE FARM; TETRACYCLINE RESIDUES;

ANTIBIOTICS; DEGRADATION; GENES; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; RNA; SOIL SURVEYS;

SOILS;

ORGANIC MATTER; RIBOSOME PROTEIN; RNA 16S; TETRACYCLINE;

AGRICULTURAL LAND; ANTIBIOTIC RESISTANCE; BACTERIUM; GENETIC VARIATION; LIQUID CHROMATOGRAPHY; LIVESTOCK FARMING; MASS SPECTROMETRY; MICROBIAL COMMUNITY; PHYLOGENETICS; POLYMERASE CHAIN REACTION; SOIL ANALYSIS; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SPECIES DIVERSITY;

AGRICULTURAL LAND; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BIVARIATE ANALYSIS; CHINA; CONCENTRATION (PARAMETERS); CORRELATION ANALYSIS; DEGRADATION; ELECTROSPRAY MASS SPECTROMETRY; ENZYME MODIFICATION; GENE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; INDUSTRY; LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SOIL ANALYSIS; SOIL POLLUTION; SWINE; TET GENE; TETA GENE; TETC GENE; TETE GENE; TETG GENE; TETK GENE; TETL GENE; TETP GENE;

ANIMAL FEED; ANIMALS; CHINA; CLONING, MOLECULAR; GENES, BACTERIAL; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL; SOIL MICROBIOLOGY; SWINE; TETRACYCLINE RESISTANCE;

CHINA;

BACTERIA (MICROORGANISMS); SUIDAE;

EID: 77956531457     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es1007802     Document Type: Article

References (42)

1. Chee-Sanford, J. C. Fate and Transport of Antibiotic Residues and Antibiotic Resistance Genes following Land Application of Manure Waste J. Environ. Qual. 2009, 38 (3) 1086-1108
2. Mackie, R. I. Tetracycline residues and tetracycline resistance genes in groundwater impacted by swine production facilities Anim. Biotechnol. 2006, 17 (2) 157-176
3. Pruden, A. Antibiotic resistance genes as emerging contaminants: Studies in northern Colorado Environ. Sci. Technol. 2006, 40 (23) 7445-7450
4. Hamscher, G. Different behavior of tetracyclines and sulfonamides in sandy soils after repeated fertilization with liquid manure Environ. Toxicol. Chem. 2005, 24 (4) 861-868
5. Martinez, J. L. Environmental pollution by antibiotics and by antibiotic resistance determinants Environ. Pollut. 2009, 157 (11) 2893-2902
6. Binh, C. T. T. Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids FEMS Microbiol. Ecol. 2008, 66 (1) 25-37
7. Rhodes, G. Distribution of oxytetracycline resistance plasmids between aeromonads in hospital and aquaculture environments: Implication of Tn1721 in dissemination of the tetracycline resistance determinant Tet A Appl. Environ. Microbiol. 2000, 66 (9) 3883-3890
8. Jindal, A. Antimicrobial use and resistance in swine waste treatment systems Appl. Environ. Microbiol. 2006, 72 (12) 7813-7820
9. Ben, W. W. Simultaneous determination of sulfonamides, tetracyclines and tiamulin in swine wastewater by solid-phase extraction and liquid chromatography-mass spectrometry J. Chromatogr., A 2008, 1202 (2) 173-180
10. Chee-Sanford, J. C. Occurrence and diversity of tetracycline resistance genes in lagoons and groundwater underlying two swine production facilities Appl. Environ. Microbiol. 2001, 67 (4) 1494-1502
11. Koike, S. Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period Appl. Environ. Microbiol. 2007, 73 (15) 4813-4823
12. Hu, J. Y. Phenotyping and genotyping of antihiotic-resistant Escherichia coli isolated from a natural river basin Environ. Sci. Technol. 2008, 42 (9) 3415-3420
13. Zhang, X. X. Class 1 integronase gene and tetracycline resistance genes tetA and tetC in different water environments of Jiangsu Province, China Ecotoxicology 2009, 18 (6) 652-660
14. Jia, A. Simultaneous determination of tetracyclines and their degradation products in environmental waters by liquid chromatography-electrospray tandem mass spectrometry J. Chromatogr., A 2009, 1216 (22) 4655-4662
15. Brown, M. G.; Mitchell, E. H.; Balkwill, D. L. Tet 42, a Novel Tetracycline Resistance Determinant Isolated from Deep Terrestrial Subsurface Bacteria Antimicrob. Agents Chemother. 2008, 52 (12) 4518-4521
16. Roberts, M. C. Update on acquired tetracycline resistance genes FEMS Microbiol. Lett. 2005, 245 (2) 195-203
17. Macauley, J. J.; Adams, C. D.; Mormile, M. R. Diversity of tet resistance genes in tetracycline-resistant bacteria isolated from a swine lagoon with low antibiotic impact Can. J. Microbiol. 2007, 53 (12) 1307-1315
18. Schmitt, H. Tetracyclines and tetracycline resistance in agricultural soils: Microcosm and field studies Microbial Ecol. 2006, 51 (3) 267-276
19. Sengelov, G. Bacterial antibiotic resistance levels in Danish farmland as a result of treatment with pig manure slurry Environ. Int. 2003, 28 (7) 587-595
20. Agerso, Y.; Sandvang, D. Class 1 integrons and tetracycline resistance genes in Alcaligenes, Arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil Appl. Environ. Microbiol. 2005, 71 (12) 7941-7947
21. Smith, M. S. Quantification of tetracycline resistance genes in feedlot lagoons by real-time PCR Appl. Environ. Microbiol. 2004, 70 (12) 7372-7377
22. Pei, R. T. Effect of River Landscape on the sediment concentrations of antibiotics and corresponding antibiotic resistance genes (ARG) Water Res. 2006, 40 (12) 2427-2435
23. Yu, Z. T. Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance Appl. Environ. Microbiol. 2005, 71 (11) 6926-6933
24. Peak, N. Abundance of six tetracycline resistance genes in wastewater lagoons at cattle feedlots with different antibiotic use strategies Environ. Microbiol. 2007, 9 (1) 143-151
25. Storteboom, H. N. Response of antibiotics and resistance genes to high-intensity and low-intensity manure management J. Environ. Qual. 2007, 36 (6) 1695-1703
26. Sengelov, G.; Halling-Sorensen, B.; Aarestrup, F. M. Susceptibility of Escherichia coli and Enterococcus faecium isolated from pigs and broiler chickens to tetracycline degradation products and distribution of tetracycline resistance determinants in E-coli from food animals Vet. Microbiol. 2003, 95 (1-2) 91-101
27. Rizzotti, L. Molecular diversity and transferability of the tetracycline resistance gene tet(M), carried on Tn916-1545 family transposons, in enterococci from a total food chain Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 2009, 96 (1) 43-52
28. Kobayashi, T. Distribution and diversity of tetracycline resistance genes encoding ribosomal protection proteins in Mekong river sediments in Vietnam FEMS Microbiol. Ecol. 2007, 59 (3) 729-737
29. Rahman, M. H. Occurrence of two genotypes of tetracycline (TC) resistance gene tet(M) in the TC-resistant bacteria in marine sediments of Japan Environ. Sci. Technol. 2008, 42 (14) 5055-5061
30. Aminov, R. I.; Garrigues-Jeanjean, N.; Mackie, R. I. Molecular ecology of tetracycline resistance: Development and validation of primers for detection of tetracycline resistance genes encoding ribosomal protection proteins Appl. Environ. Microbiol. 2001, 67 (1) 22-32
31. Aminov, R. I. Development, validation, and application of PCR primers for detection of tetracycline efflux genes of gram-negative bacteria Appl. Environ. Microbiol. 2002, 68 (4) 1786-1793
32. Chopra, I.; Roberts, M. Tetracycline antibiotics: Mode of action, applications, molecular biology, and epidemiology of bacterial resistance Microbiol. Mol. Biol. Rev. 2001, 65 (2) 232-+
33. Ng, L. K. Multiplex PCR for the detection of tetracycline resistant genes Mol. Cell. Probes 2001, 15 (4) 209-215
34. Zhang, T. Tetracycline Resistance Genes and Tetracycline Resistant Lactose-Fermenting Enterobacteriaceae in Activated Sludge of Sewage Treatment Plants Environ. Sci. Technol. 2009, 43 (10) 3455-3460
35. Suzuki, M. T.; Taylor, L. T.; DeLong, E. F. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5?-nuclease assays Appl. Environ. Microbiol. 2000, 66 (11) 4605-4614
36. Kim, S. C.; Carlson, K. Quantification of human and veterinary antibiotics in water and sediment using SPE/LC/MS/MS Anal. Bioanal. Chem. 2007, 387 (4) 1301-1315
37. Thompson, J. D.; Higgins, D. G.; Gibson, T. J. Clustal-W-Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice Nucleic Acids Res. 1994, 22 (22) 4673-4680
38. Allen, H. K. Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil ISME J. 2009, 3 (2) 243-251
39. DâCosta, V. M. Sampling the antibiotic resistome Science 2006, 311 (5759) 374-377
40. Auerbach, E. A.; Seyfried, E. E.; McMahon, K. D. Tetracycline resistance genes in activated sludge wastewater treatment plants Water Res. 2007, 41 (5) 1143-1151
41. Hamscher, G. Determination of persistent tetracycline residues in soil fertilized with liquid manure by high-performance liquid chromatography with electrospray ionization tandem mass spectrometry Anal. Chem. 2002, 74 (7) 1509-1518
42. Halling-Sorensen, B.; Sengelov, G.; Tjornelund, J. Toxicity of tetracyclines and tetracycline degradation products to environmentally relevant bacteria, including selected tetracycline-resistant bacteria Arch. Environ. Contam. Toxicol. 2002, 42 (3) 263-271