메뉴 건너뛰기




Volumn 217, Issue 4, 2010, Pages 289-299

The HUDSEN Atlas: A three-dimensional (3D) spatial framework for studying gene expression in the developing human brain

Author keywords

3D atlas; Database; Gene expression; Human embryo; Optical projection tomography

Indexed keywords

GLUTAMATE DECARBOXYLASE 65; OLIGODENDROCYTE TRANSCRIPTION FACTOR 2; TRANSCRIPTION FACTOR PAX6;

EID: 77956470520     PISSN: 00218782     EISSN: 14697580     Source Type: Journal    
DOI: 10.1111/j.1469-7580.2010.01290.x     Document Type: Article
Times cited : (38)

References (50)
  • 1
    • 10744232767 scopus 로고    scopus 로고
    • EMAP and EMAGE: a framework for understanding spatially organized data
    • Baldock RA, Bard JB, Burger A. EMAP and EMAGE: a framework for understanding spatially organized data. Neuroinformatics 2003, 1:309-325.
    • (2003) Neuroinformatics , vol.1 , pp. 309-325
    • Baldock, R.A.1    Bard, J.B.2    Burger, A.3
  • 2
  • 5
    • 75649146241 scopus 로고    scopus 로고
    • More than a decade of developmental gene expression atlases: where are we now?
    • de Boer BA, Ruijter JM, Voorbraak FP. More than a decade of developmental gene expression atlases: where are we now? Nucleic Acids Res 2009, 37:7349-7359.
    • (2009) Nucleic Acids Res , vol.37 , pp. 7349-7359
    • de Boer, B.A.1    Ruijter, J.M.2    Voorbraak, F.P.3
  • 6
    • 75549089639 scopus 로고    scopus 로고
    • Xenbase: gene expression and improved integration
    • Database issue
    • Bowes JB, Snyder KA, Segerdell E. Xenbase: gene expression and improved integration. Nucleic Acids Res 2010, 38:D607-D612. Database issue
    • (2010) Nucleic Acids Res , vol.38
    • Bowes, J.B.1    Snyder, K.A.2    Segerdell, E.3
  • 7
    • 67651091599 scopus 로고    scopus 로고
    • Differential regulation of telencephalic pallial-subpallial boundary patterning by Pax6 and Gsh2
    • Carney RS, Cocas LA, Hirata T. Differential regulation of telencephalic pallial-subpallial boundary patterning by Pax6 and Gsh2. Cereb Cortex 2009, 19:745-759.
    • (2009) Cereb Cortex , vol.19 , pp. 745-759
    • Carney, R.S.1    Cocas, L.A.2    Hirata, T.3
  • 8
    • 40449117669 scopus 로고    scopus 로고
    • Minimum information specification for in situ hybridization and immune-histochemistry experiments (MISFISHIE)
    • Deutsch EW, Ball CA, Berman JJ. Minimum information specification for in situ hybridization and immune-histochemistry experiments (MISFISHIE). Nat Biotechnol 2008, 26:305-312.
    • (2008) Nat Biotechnol , vol.26 , pp. 305-312
    • Deutsch, E.W.1    Ball, C.A.2    Berman, J.J.3
  • 9
    • 0029556886 scopus 로고
    • Sonic hedgehog: a common signal for ventral patterning along the rostrocaudal axis of the neural tube
    • Ericson J, Muhr J, Jessell TM. Sonic hedgehog: a common signal for ventral patterning along the rostrocaudal axis of the neural tube. Int J Dev Neurosci 1995, 39:809-816.
    • (1995) Int J Dev Neurosci , vol.39 , pp. 809-816
    • Ericson, J.1    Muhr, J.2    Jessell, T.M.3
  • 10
    • 25444504797 scopus 로고    scopus 로고
    • JAtlas view: a java atlas-viewer for browsing biomedical 3D images and atlases
    • Feng G, Burton N, Hill B. JAtlas view: a java atlas-viewer for browsing biomedical 3D images and atlases. BMC Bioinformatics 2005, 6:47.
    • (2005) BMC Bioinformatics , vol.6 , pp. 47
    • Feng, G.1    Burton, N.2    Hill, B.3
  • 11
    • 36248997066 scopus 로고    scopus 로고
    • A model of early molecular regionalization in the chicken pretectum
    • Ferran JL, Sánchez-Arrones L, Sandoval JE. A model of early molecular regionalization in the chicken pretectum. J Comp Neurol 2007, 505:379-403.
    • (2007) J Comp Neurol , vol.505 , pp. 379-403
    • Ferran, J.L.1    Sánchez-Arrones, L.2    Sandoval, J.E.3
  • 12
    • 40249086707 scopus 로고    scopus 로고
    • Early pretectal gene expression pattern shows a conserved anteroposterior tripartition in mouse and chicken
    • Ferran JL, Sánchez-Arrones L, Bardet SM. Early pretectal gene expression pattern shows a conserved anteroposterior tripartition in mouse and chicken. Brain Res Bull 2008, 75:295-298.
    • (2008) Brain Res Bull , vol.75 , pp. 295-298
    • Ferran, J.L.1    Sánchez-Arrones, L.2    Bardet, S.M.3
  • 14
    • 34848872221 scopus 로고    scopus 로고
    • Delineation of multiple subpallial progenitor domains by the combinatorial expression of transcriptional codes
    • Flames N, Pla R, Gelman DM. Delineation of multiple subpallial progenitor domains by the combinatorial expression of transcriptional codes. J Neurosci 2007, 27:9682-9695.
    • (2007) J Neurosci , vol.27 , pp. 9682-9695
    • Flames, N.1    Pla, R.2    Gelman, D.M.3
  • 15
    • 75549084124 scopus 로고    scopus 로고
    • WormBase: a comprehensive resource for nematode research
    • Database issue
    • Harris TW, Antoshechkin I, Bieri T. WormBase: a comprehensive resource for nematode research. Nucleic Acids Res 2010, 38:D463-D467. Database issue
    • (2010) Nucleic Acids Res , vol.38
    • Harris, T.W.1    Antoshechkin, I.2    Bieri, T.3
  • 16
    • 11144357454 scopus 로고    scopus 로고
    • Gene expression nervous system atlas (GENSAT)
    • Heintz N. Gene expression nervous system atlas (GENSAT). Nat Neurosci 2004, 7:483.
    • (2004) Nat Neurosci , vol.7 , pp. 483
    • Heintz, N.1
  • 20
    • 72449177973 scopus 로고    scopus 로고
    • Woolz IIP: a tiled on-the-fly sectioning server for 3D volumetric atlases. 5th International Symposium on Visual Computing, 2009
    • Husz ZL, Perry TP, Hill B. Woolz IIP: a tiled on-the-fly sectioning server for 3D volumetric atlases. 5th International Symposium on Visual Computing, 2009. Lect Notes Comput Sci 2009, 5875:924-933.
    • (2009) Lect Notes Comput Sci , vol.5875 , pp. 924-933
    • Husz, Z.L.1    Perry, T.P.2    Hill, B.3
  • 21
    • 0025605289 scopus 로고
    • The murine paired box gene, Pax7, is expressed specifically during the development of the nervous and muscular system
    • Jostes B, Walther C, Gruss P. The murine paired box gene, Pax7, is expressed specifically during the development of the nervous and muscular system. Mech Dev 1990, 33:27-37.
    • (1990) Mech Dev , vol.33 , pp. 27-37
    • Jostes, B.1    Walther, C.2    Gruss, P.3
  • 22
    • 0034605356 scopus 로고    scopus 로고
    • Domain-restricted expression of two glutamic acid decarboxylase genes in midgestation mouse embryos
    • Katarova Z, Sekerková G, Prodan S. Domain-restricted expression of two glutamic acid decarboxylase genes in midgestation mouse embryos. J Comp Neurol 2000, 424:607-627.
    • (2000) J Comp Neurol , vol.424 , pp. 607-627
    • Katarova, Z.1    Sekerková, G.2    Prodan, S.3
  • 23
    • 34848918150 scopus 로고    scopus 로고
    • Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
    • Lécuyer E, Yoshida H, Parthasarathy N. Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 2007, 131:174-187.
    • (2007) Cell , vol.131 , pp. 174-187
    • Lécuyer, E.1    Yoshida, H.2    Parthasarathy, N.3
  • 24
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein ES, Hawrylycz MJ, Ao N. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007, 445:168-176.
    • (2007) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1    Hawrylycz, M.J.2    Ao, N.3
  • 26
    • 26444617573 scopus 로고    scopus 로고
    • MRC-Wellcome Trust Human Developmental Biology Resource: enabling studies of human developmental gene expression
    • Lindsay S, Copp AJ. MRC-Wellcome Trust Human Developmental Biology Resource: enabling studies of human developmental gene expression. Trends Genet 2005, 21:586-590.
    • (2005) Trends Genet , vol.21 , pp. 586-590
    • Lindsay, S.1    Copp, A.J.2
  • 27
    • 4544348055 scopus 로고    scopus 로고
    • Preferential origin and layer destination of GAD65-GFP cortical interneurons
    • López-Bendito G, Sturgess K, Erdélyi F. Preferential origin and layer destination of GAD65-GFP cortical interneurons. Cereb Cortex 2004, 14:1122-1133.
    • (2004) Cereb Cortex , vol.14 , pp. 1122-1133
    • López-Bendito, G.1    Sturgess, K.2    Erdélyi, F.3
  • 28
    • 0030958714 scopus 로고    scopus 로고
    • Pax-6 functions in boundary formation and axon guidance in the embryonic mouse forebrain
    • Mastick GS, Davis NM, Andrew GL. Pax-6 functions in boundary formation and axon guidance in the embryonic mouse forebrain. Development 1997, 124:1985-1997.
    • (1997) Development , vol.124 , pp. 1985-1997
    • Mastick, G.S.1    Davis, N.M.2    Andrew, G.L.3
  • 29
    • 0034085654 scopus 로고    scopus 로고
    • Pax6 defines the di-mesencephalic boundary by repressing En1 and Pax2
    • Matsunaga E, Araki I, Nakamura H. Pax6 defines the di-mesencephalic boundary by repressing En1 and Pax2. Development 2000, 127:2357-2365.
    • (2000) Development , vol.127 , pp. 2357-2365
    • Matsunaga, E.1    Araki, I.2    Nakamura, H.3
  • 30
    • 2642533726 scopus 로고    scopus 로고
    • Expression of Dbx1, Neurogenin 2, Semaphorin 5A, Cadherin 8, and Emx1 distinguish ventral and lateral pallial histogenetic divisions in the developing mouse claustroamygdaloid complex
    • Medina L, Legaz I, González G. Expression of Dbx1, Neurogenin 2, Semaphorin 5A, Cadherin 8, and Emx1 distinguish ventral and lateral pallial histogenetic divisions in the developing mouse claustroamygdaloid complex. J Comp Neurol 2004, 474:504-523.
    • (2004) J Comp Neurol , vol.474 , pp. 504-523
    • Medina, L.1    Legaz, I.2    González, G.3
  • 31
    • 0026040568 scopus 로고
    • Nerve growth factor stimulation of GAP-43 phosphorylation in intact isolated growth cones
    • Meiri KF, Burdick D. Nerve growth factor stimulation of GAP-43 phosphorylation in intact isolated growth cones. J Neurosci 1991, 11:3156-3164.
    • (1991) J Neurosci , vol.11 , pp. 3156-3164
    • Meiri, K.F.1    Burdick, D.2
  • 32
    • 44449100587 scopus 로고    scopus 로고
    • Is Pax6 critical for neurogenesis in the human fetal brain?
    • Mo Z, Zecevic N. Is Pax6 critical for neurogenesis in the human fetal brain? Cereb Cortex 2008, 18:1455-1465.
    • (2008) Cereb Cortex , vol.18 , pp. 1455-1465
    • Mo, Z.1    Zecevic, N.2
  • 33
    • 60749125717 scopus 로고    scopus 로고
    • An anatomic gene expression atlas of the adult mouse brain
    • Ng L, Bernard A, Lau C. An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci 2009, 12:356-362.
    • (2009) Nat Neurosci , vol.12 , pp. 356-362
    • Ng, L.1    Bernard, A.2    Lau, C.3
  • 34
    • 0344678385 scopus 로고    scopus 로고
    • Expression of the Sonic hedgehog (SHH) gene during early human development and phenotypic expression of new mutations causing holoprosencephaly
    • Odent S, Atti-Bitach T, Blayau M. Expression of the Sonic hedgehog (SHH) gene during early human development and phenotypic expression of new mutations causing holoprosencephaly. Hum Mol Genet 1999, 8:1683-1689.
    • (1999) Hum Mol Genet , vol.8 , pp. 1683-1689
    • Odent, S.1    Atti-Bitach, T.2    Blayau, M.3
  • 36
    • 70249132518 scopus 로고    scopus 로고
    • New and old thoughts on the segmental organization of the forebrain in lampreys
    • Pombal MA, Megías M, Bardet SM. New and old thoughts on the segmental organization of the forebrain in lampreys. Brain Behav Evol 2009, 74:7-19.
    • (2009) Brain Behav Evol , vol.74 , pp. 7-19
    • Pombal, M.A.1    Megías, M.2    Bardet, S.M.3
  • 37
    • 0042926877 scopus 로고    scopus 로고
    • Forebrain gene expression domains and the evolving prosomeric model
    • Puelles L, Rubenstein JL. Forebrain gene expression domains and the evolving prosomeric model. Trends Neurosci 2003, 26:469-476.
    • (2003) Trends Neurosci , vol.26 , pp. 469-476
    • Puelles, L.1    Rubenstein, J.L.2
  • 38
    • 0034726614 scopus 로고    scopus 로고
    • Pallial and subpallial derivatives in the embryonic chick and mouse telencephalon, traced by the expression of the genes Dlx-2, Emx-1, Nkx-2.1, Pax-6, and Tbr-1
    • Puelles L, Kuwana E, Puelles E. Pallial and subpallial derivatives in the embryonic chick and mouse telencephalon, traced by the expression of the genes Dlx-2, Emx-1, Nkx-2.1, Pax-6, and Tbr-1. J Comp Neurol 2000, 424:409-438.
    • (2000) J Comp Neurol , vol.424 , pp. 409-438
    • Puelles, L.1    Kuwana, E.2    Puelles, E.3
  • 39
    • 84942566432 scopus 로고    scopus 로고
    • Gene maps and related histogenetic domains in the forebrain and midbrain
    • Paxinos G. 3rd edn, ed, San Diego, Academic Press
    • Puelles L, Martínez S, Martínez-de-la-Torre M. Gene maps and related histogenetic domains in the forebrain and midbrain. The Rat Nervous System 2004, 3-25. Paxinos G, 3rd edn, ed, San Diego, Academic Press
    • (2004) The Rat Nervous System , pp. 3-25
    • Puelles, L.1    Martínez, S.2    Martínez-de-la-Torre, M.3
  • 41
    • 0037134008 scopus 로고    scopus 로고
    • Optical projection tomography as a tool for 3D microscopy and gene expression studies
    • Sharpe J, Ahlgren U, Perry P. Optical projection tomography as a tool for 3D microscopy and gene expression studies. Science 2002, 296:541-545.
    • (2002) Science , vol.296 , pp. 541-545
    • Sharpe, J.1    Ahlgren, U.2    Perry, P.3
  • 43
    • 20144365509 scopus 로고    scopus 로고
    • The distribution and cellular localization of glutamic acid decarboxylase-65 (GAD65) mRNA in the forebrain and midbrain of domestic chick
    • Sun Z, Wang HB, Laverghetta A. The distribution and cellular localization of glutamic acid decarboxylase-65 (GAD65) mRNA in the forebrain and midbrain of domestic chick. J Chem Neuroanat 2005, 29:265-281.
    • (2005) J Chem Neuroanat , vol.29 , pp. 265-281
    • Sun, Z.1    Wang, H.B.2    Laverghetta, A.3
  • 44
    • 0034928252 scopus 로고    scopus 로고
    • Hedgehog-dependent oligodendrocyte lineage specification in the telencephalon
    • Tekki-Kessaris N, Woodruff R, Hall AC. Hedgehog-dependent oligodendrocyte lineage specification in the telencephalon. Development 2001, 128:2545-2554.
    • (2001) Development , vol.128 , pp. 2545-2554
    • Tekki-Kessaris, N.1    Woodruff, R.2    Hall, A.C.3
  • 45
    • 38549103708 scopus 로고    scopus 로고
    • EMAGE - Edinburgh Mouse Atlas of Gene Expression: 2008 update
    • Database issue
    • Venkataraman S, Stevenson P, Yang Y. EMAGE - Edinburgh Mouse Atlas of Gene Expression: 2008 update. Nucleic Acids Res 2008, 36:D860-D865. Database issue
    • (2008) Nucleic Acids Res , vol.36
    • Venkataraman, S.1    Stevenson, P.2    Yang, Y.3
  • 46
    • 0033375412 scopus 로고    scopus 로고
    • Developmental BioInformatics: linking genetic data to virtual embryos
    • Verbeek FJ, Lawson KA, Bard JBL. Developmental BioInformatics: linking genetic data to virtual embryos. Int J Dev Biol 1999, 43:761-771.
    • (1999) Int J Dev Biol , vol.43 , pp. 761-771
    • Verbeek, F.J.1    Lawson, K.A.2    Bard, J.B.L.3
  • 47
    • 0035217267 scopus 로고    scopus 로고
    • Structure of longitudinal brain zones that provide the origin for the substantia nigra and ventral tegmental area in human embryos, as revealed by cytoarchitecture and tyrosine hydroxylase, calretinin, calbindin, and GABA immunoreactions
    • Verney C, Zecevic N, Puelles L. Structure of longitudinal brain zones that provide the origin for the substantia nigra and ventral tegmental area in human embryos, as revealed by cytoarchitecture and tyrosine hydroxylase, calretinin, calbindin, and GABA immunoreactions. J Comp Neurol 2001, 429:22-44.
    • (2001) J Comp Neurol , vol.429 , pp. 22-44
    • Verney, C.1    Zecevic, N.2    Puelles, L.3
  • 48
    • 0026340588 scopus 로고
    • Pax-6, a murine paired box gene, is expressed in the developing CNS
    • Walther C, Gruss P. Pax-6, a murine paired box gene, is expressed in the developing CNS. Development 1991, 113:1435-1449.
    • (1991) Development , vol.113 , pp. 1435-1449
    • Walther, C.1    Gruss, P.2
  • 49
    • 74149094276 scopus 로고    scopus 로고
    • From spatial-data to 3D models of the developing human brain
    • Wang X, Lindsay S, Baldock R. From spatial-data to 3D models of the developing human brain. Methods 2010, 50:96-104.
    • (2010) Methods , vol.50 , pp. 96-104
    • Wang, X.1    Lindsay, S.2    Baldock, R.3
  • 50
    • 0035146487 scopus 로고    scopus 로고
    • Gsh2 and Pax6 play complementary roles in dorsoventral patterning of the mammalian telencephalon
    • Yun K, Potter S, Rubenstein JL. Gsh2 and Pax6 play complementary roles in dorsoventral patterning of the mammalian telencephalon. Development 2001, 128:193-205.
    • (2001) Development , vol.128 , pp. 193-205
    • Yun, K.1    Potter, S.2    Rubenstein, J.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.