OpenMEEG: Opensource software for quasistatic bioelectromagnetics

BioMedical Engineering Online

Volumn 9, Issue , 2010, Pages

  Gramfort, Alexandre ^a,b   Papadopoulo, Théodore ^a   Olivi, Emmanuel ^a   Clerc, Maureen ^a  

^a INRIA   (France)

^b INRIA SACLAY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL SOLUTIONS; BENCHMARK STUDY; BOUNDARY ELEMENTS; COLLOCATION METHOD; CONDUCTIVITY MODELS; CONDUCTIVITY RATIO; FORWARD COMPUTATION; MESH NODES; NUMERICAL SOLVERS; OPEN-SOURCE SOFTWARES; PIECEWISE CONSTANT; QUASI-STATIC; REALISTIC MODEL; RESEARCH COMMUNITIES; SIMPLIFIED MODELS; SOFTWARE DEVELOPMENT; SPHERICAL MODELS; STATE OF THE ART; SYMMETRIC BEM;

BLIND SOURCE SEPARATION; BOUNDARY ELEMENT METHOD; ELECTROPHYSIOLOGY; MAGNETOENCEPHALOGRAPHY; PHYSIOLOGICAL MODELS; SOFTWARE DESIGN;

NUMBER THEORY;

ARTICLE; COMPUTER; COMPUTER PROGRAM; ELECTRICITY; ELECTROENCEPHALOGRAPHY; ELECTROMAGNETIC FIELD; IMPEDANCE; LEGAL ASPECT; LICENSING; MAGNETISM; MAGNETOENCEPHALOGRAPHY; QUALITY CONTROL; STANDARD; THEORETICAL MODEL; TIME; TOMOGRAPHY;

BENCHMARKING; COMPUTERS; ELECTRIC IMPEDANCE; ELECTRICITY; ELECTROENCEPHALOGRAPHY; ELECTROMAGNETIC PHENOMENA; LICENSURE; MAGNETICS; MAGNETOENCEPHALOGRAPHY; MODELS, THEORETICAL; QUALITY CONTROL; SOFTWARE; TIME FACTORS; TOMOGRAPHY;

EID: 77956464128     PISSN: 1475925X     EISSN: 1475925X     Source Type: Journal    
DOI: 10.1186/1475-925X-9-45     Document Type: Article

References (31)

1. Soleimani M, Shipley R, Smith N, Mitchell C. Medical imaging and physiological modelling. linking physics and biology. BioMedical Engineering OnLine 2009, 8:1. 10.1186/1475-925X-8-1, 2628919, 19138401.
2. de Munck J, Peters M. A fast method to compute the potential in the multisphere model. IEEE Trans on Biomed Engin 1993, 40(11):1163-1174.
3. Kariotou F. Electroencephalography in ellipsoidal geometry. J Math Anal Appl 2004, 290:324-42.
4. Sarvas J. Basic mathematical and electromagnetic concepts of the biomagnetic inverse problem. Phys Med Biol 1987, 32:11-22. 10.1088/0031-9155/32/1/004, 3823129.
5. Geselowitz DB. On bioelectric potentials in an homogeneous volume conductor. Biophysics Journal 1967, 7:1-11.
6. Nédélec JC. Acoustic and Electromagnetic Equations 2001, Springer Verlag.
7. Kybic J, Clerc M, Abboud T, Faugeras O, Keriven R, Papadopoulo T. A Common Formalism for the Integral Formulations of the Forward EEG Problem. IEEE Transactions on Medical Imaging 2005, 24:12-28. 10.1109/TMI.2004.837363, 15638183.
8. Voth EJ. The inverse problem of electrocardiography. industrial solutions and simulations. IJBEM 2005, 7(2).
9. Kybic J, Clerc M, Faugeras O, Keriven R, Papadopoulo T. Generalized head models for MEG/EEG. boundary element method beyond nested volumes. Physics in Medicine and Biology 2006, 51:1333-1346. 10.1088/0031-9155/51/5/021, 16481698.
10. Hämäläinen M, Hari R, IImoniemi RJ, Knuutila J, Lounasmaa OV. Magnetoencephalography--theory, instrumentation, and applications to noninvasive studies of the working human brain. Reviews of Modern Physics 1993, 65(2):413-497.
11. Ferguson AS, Zhang X, Stroink G. A Complete Linear Discretization for Calculating the Magnetic Field Using the Boundary Element Method. IEEE Trans Biomed Eng 1994, 41(5):455-459. 10.1109/10.293220, 8070805.
12. Goncalves S, de Munck J, Verbunt J, Heethaar R, Lopes da Silva F. In vivo measurement of the brain and skull resistivities using an EIT-based method and the combined analysis of SEF/SEP data. IEEE Transactions on Biomedical Engineering 2003, 50(9):1124-1128. 10.1109/TBME.2003.816072, 12943281.
13. Clerc M, Badier JM, Adde G, Kybic J, Papadopoulo T. Boundary Element formulation for Electrical Impedance Tomography. ESAIM. Proceedings, EDP Sciences 2005, 14:63-71.
14. Clerc M, Adde G, Kybic J, Papadopoulo T, Badier JM. In vivo conductivity estimation with symmetric boundary elements. International Journal of Bioelectromagnetism 2005, 7:307-310. Malmivuo J.
15. Jacquir S, Fruitet J, Guiraud D, Clerc M. Computation of the electrical potential inside the nerve induced by an electrical stimulus. EMBC 2007: Proceedings of the 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2007,
16. Laforêt J, Guiraud D, Clerc M. A toolchain to simulate and investigate selective stimulation strategies for FES. EMBC 2009: Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2009,
17. He B, Wang Y, Wu D. Estimating Cortical Potentials from Scalp EEGs in a Realistically Shaped Inhomogeneous Head Model by Means of the Boundary Element Method. IEEE Transactions on Biomedical Engineering 1999, 46(10):1264-1268. 10.1109/10.790505, 10513133.
18. Clerc M, Kybic J. Cortical mapping by Laplace-Cauchy transmission using a boundary element method. Inverse Problems 2007, 23:2589-2601.
19. de Munck JC. A linear discretization of the Volume Conductor Boundary Integral Equation using Analytically Integrated Elements. IEEE Trans Biomed Eng 1992, 39(9):986-990. 10.1109/10.256433, 1473829.
20. Bonnet M. Boundary Integral Equations Methods for Solids and Fluids 1999, John Wiley and Sons.
21. Clerc M, Dervieux A, Faugeras O, Keriven R, Kybic J, Papadopoulo T. Comparison of BEM and FEM methods for the E/MEG problem. Proceedings of BIOMAG Conference 2002,
22. Oostendorp T, van Oosterom A. Source parameter estimation in inhomogeneous volume conductors of arbitrary shape. IEEE Trans Bioned Engin 1989, 36:382-391.
23. Phillips C. Source estimation in EEG. PhD thesis 2000, Université de Liège.
24. Hämäläinen MS, Sarvas J. Realistic Conductivity Geometry Model of the Human Head for Interpretation of Neuromagnetic Data. IEEE Trans Biomed Eng 1989, 36(2):165-171. 10.1109/10.16463, 2917762.
25. Stenroos M, Mäntynen V, Nenonen J. A Matlab library for solving quasi-static volume conduction problems using the boundary element method. Comput Methods Prog Biomed 2007, 88(3):256-263.
26. Akalin-Acar Z, Gençer NG. An advanced boundary element method (BEM) implementation for the forward problem of electromagnetic source imaging. Physics in medicine and biology 2004, 49(21):5011-28. 10.1088/0031-9155/49/21/012, 15584534.
27. Zanow F, Knosche T. ASA-Advanced Source Analysis of Continuous and Event-Related EEG/MEG Signals. Brain Topography 2004, 16(4):287-290. 10.1023/B:BRAT.0000032867.41555.d0, 15379229.
28. Parker S, Johnson C. SCIRun: A Scientific Programming Environment for Computational Steering. Proceedings of the IEEE/ACM Supercomputing Conference, IEEE 1995, 52.
29. Meijs JWH, Weier OW, Peters MJ, van Oosterom A. On the numerical accuracy of the boundary element method. IEEE Trans Biomed Eng 1989, 36:1038-1049. 10.1109/10.40805, 2793196.
30. Van Uitert R, Johnson C, Zhukov L. Influence of head tissue conductivity in forward and inverse magnetoencephalographic simulations using realistic head models. IEEE Trans on Biomed Engin 2004, 51(12):2129-2137.
31. Nolte G. The magnetic lead field theorem in the quasi-static approximation and its use for magnetoencephalography forward calculation in realistic volume conductors. Physics in Medicine and Biology 2003, 48:3637-3652. 10.1088/0031-9155/48/22/002, 14680264.