Versatile aromatic compound-degrading capacity and microdiversity of Thauera strains isolated from a coking wastewater treatment bioreactor

Journal of Industrial Microbiology and Biotechnology

Volumn 37, Issue 9, 2010, Pages 927-934

  Mao, Yuejian ^a   Zhang, Xiaojun ^a,c   Xia, Xi ^a,b   Zhong, Huihui ^a   Zhao, Liping ^a  

^a Shanghai Jiao Tong University   (China)

^b LANZHOU UNIVERSITY   (China)

^c SHANGHAI JIAO TONG UNIVERSITY   (China)

Author keywords

Aromatic compound; Degradation; Microdiversity; Thauera

Indexed keywords

AROMATIC COMPOUND; CRESOL; INDOLE; NITRITE REDUCTASE; PHENOL; RNA 16S;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOREACTOR; COKING INDUSTRY; CONTROLLED STUDY; GENE SEQUENCE; GENE STRUCTURE; LMPH GENE; MICROBIAL DEGRADATION; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; THAUERA; WASTE WATER MANAGEMENT; WASTE WATER TREATMENT PLANT;

AEROBIOSIS; BIODIVERSITY; BIOREACTORS; COKE; CRESOLS; GENES, RRNA; INDOLES; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; NITRITE REDUCTASES; PHENOL; PHYLOGENY; RNA, RIBOSOMAL, 16S; THAUERA; WATER POLLUTANTS, CHEMICAL;

ENTEROBACTERIACEAE; THAUERA;

EID: 77956456345     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-010-0740-7     Document Type: Article

References (24)

1. HJ Anders A Kaetzke P Kampfer W Ludwig G Fuchs 1995 Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria Int J Syst Bacteriol 45 327 333 10.1099/00207713-45-2-327 1:CAS:528:DyaK2MXmtFWhs70%3D 7537067
2. RG Beiko TJ Harlow MA Ragan 2005 Highways of gene sharing in prokaryotes Proc Natl Acad Sci USA 102 14332 14337 10.1073/pnas.0504068102 1:CAS:528:DC%2BD2MXhtFCgsr7K 16176988 (Pubitemid 41429698)
3. G Braker A Fesefeldt KP Witzel 1998 Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples Appl Environ Microbiol 64 3769 3775 1:CAS:528:DyaK1cXms1ent7g%3D 9758798
4. S Foss J Harder 1998 Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen-containing monoterpenes (linalool, menthol, and eucalyptol) nitrate Syst Appl Microbiol 21 365 373 1:CAS:528:DyaK1cXmt1Chsrw%3D 9841126
5. H Futamata S Harayama K Watanabe 2001 Group-specific monitoring of phenol hydroxylase genes for a functional assessment of phenol-stimulated trichloroethylene bioremediation Appl Environ Microbiol 67 4671 4677 10.1128/AEM.67.10.4671-4677.2001 1:CAS:528:DC%2BD3MXns1Witr8%3D 11571171 (Pubitemid 33646099)
6. M Gillings M Holley 1997 Repetitive element PCR fingerprinting (rep-PCR) using enterobacterial repetitive intergenic consensus (ERIC) primers is not necessarily directed at ERIC elements Lett Appl Microbiol 25 17 21 10.1046/j.1472-765X.1997.00162.x 1:CAS:528:DyaK2sXltlWmurs%3D 9248074
7. CS Harwood G Burchhardt H Herrmann G Fuchs 1998 Anaerobic metabolism of aromatic compounds via the benzoyl-CoA pathway FEMS Microbiol Rev 22 439 458 10.1111/j.1574-6976.1998.tb00380.x 1:CAS:528:DyaK1MXksFCqug%3D%3D
8. E Jaspers J Overmann 2004 Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies Appl Environ Microbiol 70 4831 4839 10.1128/AEM.70.8.4831-4839.2004 1:CAS:528:DC%2BD2cXms1eksr4%3D 15294821 (Pubitemid 39095511)
9. B Liu F Zhang X Feng Y Liu X Yan X Zhang, et al. 2006 Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison FEMS Microbiol Ecol 55 274 286 10.1111/j.1574-6941.2005.00033.x 1:CAS:528: DC%2BD28Xit1Snur4%3D 16420635
10. M Manefield AS Whiteley RI Griffiths MJ Bailey 2002 RNA stable isotope probing, a novel means of linking microbial community function to phylogeny Appl Environ Microbiol 68 5367 5373 10.1128/AEM.68.11.5367-5373.2002 1:CAS:528:DC%2BD38Xos1Wqu7c%3D 12406726
11. Y Mao X Zhang B Zhang L Zhao 2008 Specific-PCR and denaturing gradient gel electrophoresis assisting isolation of Thauera spp. from a coking wastewater treatment plant Acta Microbiologica Sinica (Wei Sheng Wu Xue Bao) 48 1634 1641 1:CAS:528:DC%2BD1MXktlWgs7g%3D
12. Y Mao X Zhang X Yan B Liu L Zhao 2008 Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment plant responding to operational perturbations J Microbiol Methods 75 231 236 10.1016/j.mimet.2008.06.005 1:CAS:528: DC%2BD1cXhtV2jsbfE 18601961
13. T Mechichi E Stackebrandt N Gad'on G Fuchs 2002 Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov Arch Microbiol 178 26 35 10.1007/s00203-002-0422-6 1:CAS:528:DC%2BD38XlsFGjt7o%3D 12070766 (Pubitemid 34639511)
14. C Probian A Wulfing J Harder 2003 Anaerobic mineralization of quaternary carbon atoms: isolation of denitrifying bacteria on pivalic acid (2,2-dimethylpropionic acid) Appl Environ Microbiol 69 1866 1870 10.1128/AEM.69.3.1866-1870.2003 1:CAS:528:DC%2BD3sXitlClt7c%3D 12620885 (Pubitemid 36314336)
15. IG Rivera MA Chowdhury A Huq D Jacobs MT Martins RR Colwell 1995 Enterobacterial repetitive intergenic consensus sequences and the PCR to generate fingerprints of genomic DNAs from Vibrio cholerae O1, O139, and non-O1 strains Appl Environ Microbiol 61 2898 2904 1:CAS:528:DyaK2MXnt1aitLY%3D 7487023
16. H Satoh T Yamakawa T Kindaichi T Ito S Okabe 2006 Community structures and activities of nitrifying and denitrifying bacteria in industrial wastewater-treating biofilms Biotechnol Bioeng 94 762 772 10.1002/bit.20894 1:CAS:528:DC%2BD28XmtlOjs7c%3D 16477661 (Pubitemid 44018033)
17. E Scholten T Lukow G Auling RM Kroppenstedt FA Rainey H Diekmann 1999 Thauera mechernichensis sp. nov., an aerobic denitrifier from a leachate treatment plant Int J Syst Bacteriol 49 Pt 3 1045 1051 10.1099/00207713-49-3- 1045 1:STN:280:DyaK1MzlsVCqtg%3D%3D 10425762
18. Y Shinoda Y Sakai H Uenishi Y Uchihashi A Hiraishi H Yukawa, et al. 2004 Aerobic and anaerobic toluene degradation by a newly isolated denitrifying bacterium, Thauera sp. strain DNT-1 Appl Environ Microbiol 70 1385 1392 10.1128/AEM.70.3.1385-1392.2004 1:CAS:528:DC%2BD2cXisVKjurw%3D 15006757 (Pubitemid 38365117)
19. B Song NJ Palleroni MM Haggblom 2000 Description of strain 3CB-1, a genomovar of Thauera aromatica, capable of degrading 3-chlorobenzoate coupled to nitrate reduction Int J Syst Evol Microbiol 50 Pt 2 551 558 1:STN:280:DC%2BD3c3it1Wmuw%3D%3D 10758860
20. B Song NJ Palleroni LJ Kerkhof MM Haggblom 2001 Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov Int J Syst Evol Microbiol 51 589 602 1:CAS:528:DC%2BD3MXivVOrurY%3D 11321105
21. TR Thomsen Y Kong PH Nielsen 2007 Ecophysiology of abundant denitrifying bacteria in activated sludge FEMS Microbiol Ecol 60 370 382 10.1111/j.1574-6941. 2007.00309.x 1:CAS:528:DC%2BD2sXmsFemtbY%3D 17391331 (Pubitemid 46802119)
22. A Valle MJ Bailey AS Whiteley M Manefield 2004 N-acyl-l-homoserine lactones (AHLs) affect microbial community composition and function in activated sludge Environ Microbiol 6 424 433 10.1111/j.1462-2920.2004.00581.x 1:CAS:528:DC%2BD2cXjslCisrc%3D 15008819 (Pubitemid 38427321)
23. M Zhang JH Tay Y Qian XS Gu 1998 Coke plant wastewater treatment by fixed biofilm system for COD and NH3-N removal Water Res 32 519 527 10.1016/S0043-1354(97)00231-5 1:CAS:528:DyaK1cXns12gug%3D%3D (Pubitemid 28035058)
24. EG Zoetendal ADL Akkermans WM De Vos 1998 Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria Appl Environ Microbiol 64 3854 3859 1:CAS:528:DyaK1cXms1entLY%3D 9758810