메뉴 건너뛰기




Volumn 33, Issue 10, 2010, Pages 1742-1755

Intraspecific variation in the Populus balsamifera drought transcriptome

Author keywords

Balsam poplar; Drought; Genotypic variation; Microarray; Transcriptome

Indexed keywords

PLANT DNA; PLANT RNA; WATER;

EID: 77956444717     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2010.02179.x     Document Type: Article
Times cited : (49)

References (55)
  • 1
    • 0000267872 scopus 로고
    • A re-examination of the relative turgidity technique for estimating the water deficits in leaves
    • Barrs HD, Weatherley PE. A re-examination of the relative turgidity technique for estimating the water deficits in leaves. Australian Journal of Biological Sciences 1962, 413:428.
    • (1962) Australian Journal of Biological Sciences , vol.413 , pp. 428
    • Barrs, H.D.1    Weatherley, P.E.2
  • 2
    • 69149090014 scopus 로고    scopus 로고
    • Intraspecific differences in drought tolerance and acclimation in hydraulics of Ligustrum vulgare and Viburnum lantana
    • Beikircher B, Mayr S. Intraspecific differences in drought tolerance and acclimation in hydraulics of Ligustrum vulgare and Viburnum lantana. Tree Physiology 2009, 29:765-775.
    • (2009) Tree Physiology , vol.29 , pp. 765-775
    • Beikircher, B.1    Mayr, S.2
  • 3
    • 3042672020 scopus 로고    scopus 로고
    • Functional annotation of the arabidopsis genome using controlled vocabularies
    • Berardini TZ, Mundodi S, Reiser L. Functional annotation of the arabidopsis genome using controlled vocabularies. Plant Physiology 2004, 135:745-755.
    • (2004) Plant Physiology , vol.135 , pp. 745-755
    • Berardini, T.Z.1    Mundodi, S.2    Reiser, L.3    et al4
  • 4
    • 34247192073 scopus 로고    scopus 로고
    • Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions
    • Bogeat-Triboulot M-B, Brosche M, Renaut J. Gradual soil water depletion results in reversible changes of gene expression, protein profiles, ecophysiology, and growth performance in Populus euphratica, a poplar growing in arid regions. Plant Physiology 2007, 143:876-892.
    • (2007) Plant Physiology , vol.143 , pp. 876-892
    • Bogeat-Triboulot, M.-B.1    Brosche, M.2    Renaut, J.3    et al4
  • 5
    • 67650128347 scopus 로고    scopus 로고
    • Genetic variation and drought response in two Populus × euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants
    • Bonhomme L, Monclus R, Vincent D. Genetic variation and drought response in two Populus × euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants. Phytochemistry 2009, 70:988-1002.
    • (2009) Phytochemistry , vol.70 , pp. 988-1002
    • Bonhomme, L.1    Monclus, R.2    Vincent, D.3    et al4
  • 6
    • 8444230584 scopus 로고    scopus 로고
    • Genes commonly regulated by water-deficit stress in Arabidopsis thaliana
    • Bray EA. Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. Journal of Experimental Botany. 2004, 55:2331-2341.
    • (2004) Journal of Experimental Botany. , vol.55 , pp. 2331-2341
    • Bray, E.A.1
  • 7
    • 33646153882 scopus 로고    scopus 로고
    • Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert
    • Brosche M, Vinocur B, Alatalo E. Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert. Genome Biology 2005, 6:R101.
    • (2005) Genome Biology , vol.6
    • Brosche, M.1    Vinocur, B.2    Alatalo, E.3    et al4
  • 8
    • 0742323273 scopus 로고    scopus 로고
    • Poplar genome sequence: functional genomics in an ecologically dominant plant species
    • Brunner AM, Busov VB, Strauss SH. Poplar genome sequence: functional genomics in an ecologically dominant plant species. Trends in Plant Science 2004, 9:49-56.
    • (2004) Trends in Plant Science , vol.9 , pp. 49-56
    • Brunner, A.M.1    Busov, V.B.2    Strauss, S.H.3
  • 9
    • 0030656442 scopus 로고    scopus 로고
    • Genotypic variation in drought tolerance of poplar in relation to abscisic acid
    • Chen S, Wang S, Altman A, Huttermann A. Genotypic variation in drought tolerance of poplar in relation to abscisic acid. Tree Physiol 1997, 17:797-803.
    • (1997) Tree Physiol , vol.17 , pp. 797-803
    • Chen, S.1    Wang, S.2    Altman, A.3    Huttermann, A.4
  • 10
    • 77649211107 scopus 로고    scopus 로고
    • Individuals and the variation needed for high species diversity in forest trees
    • Clark JS. Individuals and the variation needed for high species diversity in forest trees. Science 2010, 327:1129.
    • (2010) Science , vol.327 , pp. 1129
    • Clark, J.S.1
  • 11
    • 0043269894 scopus 로고    scopus 로고
    • A comparison of pre-planting treatments on hardwood cttings of four hybrid poplar clones
    • Desrochers A, Thomas BR. A comparison of pre-planting treatments on hardwood cttings of four hybrid poplar clones. New Forests 2003, 26:17-23.
    • (2003) New Forests , vol.26 , pp. 17-23
    • Desrochers, A.1    Thomas, B.R.2
  • 12
    • 0742314382 scopus 로고    scopus 로고
    • An overview of the genus Populus
    • Dickmann DI, Isebrands JG, Eckenwaler JE, Richadson J. eds, NRC Research Press, Ottawa
    • Dickmann DI. An overview of the genus Populus. Poplar Culture in North America (Part 2) 2001, 1-42. Dickmann DIIsebrands JGEckenwaler JERichadson J. eds, NRC Research Press, Ottawa
    • (2001) Poplar Culture in North America (Part 2) , pp. 1-42
    • Dickmann, D.I.1
  • 13
    • 0000479431 scopus 로고
    • A rapid total DNA preparation procedure for fresh plant tissue
    • Doyle JJ, Doyle JL. A rapid total DNA preparation procedure for fresh plant tissue. Focus 1990, 12:13-15.
    • (1990) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 14
    • 23144451739 scopus 로고    scopus 로고
    • Physiological responses to drought and shade in two contrasting Picea asperata populations
    • Duan B, Lu Y, Yin C, Junttila O, Li C. Physiological responses to drought and shade in two contrasting Picea asperata populations. Physiologia Plantarum 2005, 124:476-484.
    • (2005) Physiologia Plantarum , vol.124 , pp. 476-484
    • Duan, B.1    Lu, Y.2    Yin, C.3    Junttila, O.4    Li, C.5
  • 16
    • 1342288026 scopus 로고    scopus 로고
    • Affy - analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. Affy - analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20:307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 17
    • 0026049057 scopus 로고
    • Seasonal and clonal variations in drought tolerance of Populus deltoides
    • Gebre GM, Kuhns MR. Seasonal and clonal variations in drought tolerance of Populus deltoides. Canadian Journal of Forest. Research 1991, 21:910-916.
    • (1991) Canadian Journal of Forest. Research , vol.21 , pp. 910-916
    • Gebre, G.M.1    Kuhns, M.R.2
  • 18
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 2004, 5:R80.
    • (2004) Genome Biology , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    et al4
  • 19
    • 34548409084 scopus 로고    scopus 로고
    • Evaluation of drought response of two poplar clones (Populus x canadensis Monch 'I-214' and P. deltoides Marsh. 'Dvina') through high resolution analysis of stem growth
    • Giovannelli A, Deslauriers A, Fragnelli G, Scaletti L, Castro G, Rossi S, Crivellaro A. Evaluation of drought response of two poplar clones (Populus x canadensis Monch 'I-214' and P. deltoides Marsh. 'Dvina') through high resolution analysis of stem growth. Journal of Experimental Botany. 2007, 58:2673-2683.
    • (2007) Journal of Experimental Botany. , vol.58 , pp. 2673-2683
    • Giovannelli, A.1    Deslauriers, A.2    Fragnelli, G.3    Scaletti, L.4    Castro, G.5    Rossi, S.6    Crivellaro, A.7
  • 21
    • 45549086886 scopus 로고    scopus 로고
    • Array-based high-throughput DNA markers for crop improvement
    • Gupta PK, Rustgi S, Mir RR. Array-based high-throughput DNA markers for crop improvement. Heredity 2008, 101:5-18.
    • (2008) Heredity , vol.101 , pp. 5-18
    • Gupta, P.K.1    Rustgi, S.2    Mir, R.R.3
  • 23
    • 0036106369 scopus 로고    scopus 로고
    • Growth and dieback of aspen forests in northwestern Alberta, Canada, in relation to climate and insects
    • Hogg EH, Brandt JP, Kochtubajda B. Growth and dieback of aspen forests in northwestern Alberta, Canada, in relation to climate and insects. Canadian Journal of Forest Research 2002, 32:823-832.
    • (2002) Canadian Journal of Forest Research , vol.32 , pp. 823-832
    • Hogg, E.H.1    Brandt, J.P.2    Kochtubajda, B.3
  • 24
    • 0038574923 scopus 로고    scopus 로고
    • Active gene expression of a xyloglucan endotransglucosylase/hydrolase gene, XTH9, in inflorescence apices is related to cell elongation in Arabidopsis thaliana
    • Hyodo H, Yamakawa S, Takeda Y, Tsuduki M, Yokota A, Nishitani K, Kohchi T. Active gene expression of a xyloglucan endotransglucosylase/hydrolase gene, XTH9, in inflorescence apices is related to cell elongation in Arabidopsis thaliana. Plant Molecular Biology 2003, 52:473-482.
    • (2003) Plant Molecular Biology , vol.52 , pp. 473-482
    • Hyodo, H.1    Yamakawa, S.2    Takeda, Y.3    Tsuduki, M.4    Yokota, A.5    Nishitani, K.6    Kohchi, T.7
  • 25
    • 0036526266 scopus 로고    scopus 로고
    • Acclimation and adaptive responses of woody plants to environmental stresses
    • Kozlowski T, Pallardy S. Acclimation and adaptive responses of woody plants to environmental stresses. The Botanical Review 2002, 68:270-334.
    • (2002) The Botanical Review , vol.68 , pp. 270-334
    • Kozlowski, T.1    Pallardy, S.2
  • 26
    • 0036909761 scopus 로고    scopus 로고
    • Transcriptome changes for arabidopsis in response to salt, osmotic, and cold stress
    • Kreps JA, Wu Y, Chang H-S, Zhu T, Wang X, Harper JF. Transcriptome changes for arabidopsis in response to salt, osmotic, and cold stress. Plant Physiology 2002, 130:2129-2141.
    • (2002) Plant Physiology , vol.130 , pp. 2129-2141
    • Kreps, J.A.1    Wu, Y.2    Chang, H.-S.3    Zhu, T.4    Wang, X.5    Harper, J.F.6
  • 27
    • 33645503260 scopus 로고    scopus 로고
    • Microarray analysis reveals differential gene expression in hybrid sunflower species
    • Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH. Microarray analysis reveals differential gene expression in hybrid sunflower species. Molecular Ecology 2006, 15:1213-1227.
    • (2006) Molecular Ecology , vol.15 , pp. 1213-1227
    • Lai, Z.1    Gross, B.L.2    Zou, Y.3    Andrews, J.4    Rieseberg, L.H.5
  • 28
    • 33744483076 scopus 로고    scopus 로고
    • Differences in some morphological, physiological, and biochemical responses to drought stress in two contrasting populations of Populus przewalskii
    • Lei YB, Yin CY, Li CY. Differences in some morphological, physiological, and biochemical responses to drought stress in two contrasting populations of Populus przewalskii. Physiologia Plantarum 2006, 127:182-191.
    • (2006) Physiologia Plantarum , vol.127 , pp. 182-191
    • Lei, Y.B.1    Yin, C.Y.2    Li, C.Y.3
  • 29
    • 69849105563 scopus 로고    scopus 로고
    • Intraspecific variation in drought response of Populus cathayana grown under ambient and enhanced UV-B radiation
    • Lu Y, Duan B, Zhang X, Korpelainen H, Berninger F, Li C. Intraspecific variation in drought response of Populus cathayana grown under ambient and enhanced UV-B radiation. Annals of Forest Science 2009, 66:613.
    • (2009) Annals of Forest Science , vol.66 , pp. 613
    • Lu, Y.1    Duan, B.2    Zhang, X.3    Korpelainen, H.4    Berninger, F.5    Li, C.6
  • 30
    • 34250790333 scopus 로고    scopus 로고
    • SFP genotyping from affymetrix arrays is robust but largely detects Cis-acting expression regulators
    • Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ. SFP genotyping from affymetrix arrays is robust but largely detects Cis-acting expression regulators. Genetics 2007, 176:789-800.
    • (2007) Genetics , vol.176 , pp. 789-800
    • Luo, Z.W.1    Potokina, E.2    Druka, A.3    Wise, R.4    Waugh, R.5    Kearsey, M.J.6
  • 32
    • 62549109118 scopus 로고    scopus 로고
    • Testing significance relative to a fold-change threshold is a TREAT
    • McCarthy DJ, Smyth GK. Testing significance relative to a fold-change threshold is a TREAT. Bioinformatics 2009, 25:765-771.
    • (2009) Bioinformatics , vol.25 , pp. 765-771
    • McCarthy, D.J.1    Smyth, G.K.2
  • 33
    • 0035212734 scopus 로고    scopus 로고
    • Pectin methylesterases: cell wall enzymes with important roles in plant physiology
    • Micheli F. Pectin methylesterases: cell wall enzymes with important roles in plant physiology. Trends in Plant Science 2001, 6:414-419.
    • (2001) Trends in Plant Science , vol.6 , pp. 414-419
    • Micheli, F.1
  • 34
    • 33645747022 scopus 로고    scopus 로고
    • Impact of drought on productivity and water use efficiency in 29 genotypes of Populus deltoides×Populus nigra
    • Monclus R, Dreyer E, Villar M. Impact of drought on productivity and water use efficiency in 29 genotypes of Populus deltoides×Populus nigra. New Phytologist 2006, 169:765-777.
    • (2006) New Phytologist , vol.169 , pp. 765-777
    • Monclus, R.1    Dreyer, E.2    Villar, M.3    et al4
  • 35
    • 49449090698 scopus 로고    scopus 로고
    • Galactinol and raffinose constitute a novel function to protect plants from oxidative damage
    • Nishizawa A, Yabuta Y, Shigeoka S. Galactinol and raffinose constitute a novel function to protect plants from oxidative damage. Plant Physiology 2008, 147:1251-1263.
    • (2008) Plant Physiology , vol.147 , pp. 1251-1263
    • Nishizawa, A.1    Yabuta, Y.2    Shigeoka, S.3
  • 36
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Oleksiak MF, Churchill GA, Crawford DL. Variation in gene expression within and among natural populations. Nature Genetics 2002, 32:261-266.
    • (2002) Nature Genetics , vol.32 , pp. 261-266
    • Oleksiak, M.F.1    Churchill, G.A.2    Crawford, D.L.3
  • 38
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
    • R: A Language and Environment for Statistical Computing 2009, R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
    • (2009) R: A Language and Environment for Statistical Computing
  • 40
    • 65549102151 scopus 로고    scopus 로고
    • The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
    • Sjodin A, Street NR, Sandberg G, Gustafsson P, Jansson S. The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. New Phytologist 2009, 182:1013-1025.
    • (2009) New Phytologist , vol.182 , pp. 1013-1025
    • Sjodin, A.1    Street, N.R.2    Sandberg, G.3    Gustafsson, P.4    Jansson, S.5
  • 41
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth GK. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 2004, 3:Article 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.K.1
  • 44
    • 0031918674 scopus 로고    scopus 로고
    • Variability among species of stomatal control under fluctuating soil water status and evaporative demand: modelling isohydric and anisohydric behaviours
    • Tardieu F, Simonneau T. Variability among species of stomatal control under fluctuating soil water status and evaporative demand: modelling isohydric and anisohydric behaviours. Journal of Experimental Botany. 1998, 49:419-432.
    • (1998) Journal of Experimental Botany. , vol.49 , pp. 419-432
    • Tardieu, F.1    Simonneau, T.2
  • 45
    • 0028052642 scopus 로고
    • Water-stress tolerance of black and eastern cottonwood clones and four hybrid progeny. 1. Growth, water relations and gas exchange
    • Tschaplinski TJ, Tuskan GA, Gunderson CA. Water-stress tolerance of black and eastern cottonwood clones and four hybrid progeny. 1. Growth, water relations and gas exchange. Canadian Journal of Forest Research 1994, 24:364-371.
    • (1994) Canadian Journal of Forest Research , vol.24 , pp. 364-371
    • Tschaplinski, T.J.1    Tuskan, G.A.2    Gunderson, C.A.3
  • 46
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan GA, DiFazio S, Jansson S. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006, 313:1596-1604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1    DiFazio, S.2    Jansson, S.3    et al4
  • 48
    • 77956421438 scopus 로고    scopus 로고
    • USDA-NRCS, L. The PLANTS Database National Plant Data Center, Baton Rouge, LA, USA. [WWW Document]. URL [accessed on 5 May 2009]
    • Populus balsamifera 2009, http://plants.usda.gov, USDA-NRCS, L. The PLANTS Database National Plant Data Center, Baton Rouge, LA, USA. [WWW Document]. URL [accessed on 5 May 2009]
    • (2009) Populus balsamifera
  • 50
    • 58849122697 scopus 로고    scopus 로고
    • Widespread increase of tree mortality rates in the western united states
    • van Mantgem PJ, Stephenson NL, Byrne JC. Widespread increase of tree mortality rates in the western united states. Science 2009, 323:521-524.
    • (2009) Science , vol.323 , pp. 521-524
    • van Mantgem, P.J.1    Stephenson, N.L.2    Byrne, J.C.3    et al4
  • 52
    • 33645524495 scopus 로고    scopus 로고
    • Variation within and among species in gene expression: raw material for evolution
    • Whitehead A, Crawford DL. Variation within and among species in gene expression: raw material for evolution. Molecular Ecology 2006, 15:1197-1211.
    • (2006) Molecular Ecology , vol.15 , pp. 1197-1211
    • Whitehead, A.1    Crawford, D.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.