Fluoroquinolone resistance detection in campylobacter coli and campylobacter jejuni by luminex® xMAP™ technology

Foodborne Pathogens and Disease

Volumn 7, Issue 9, 2010, Pages 1039-1045

  Barco, Lisa ^a   Lettini, Antonia Anna ^a   Pozza, Maria Cristina Dalla ^a   Ramon, Elena ^a   Fasolato, Manuela ^a   Ricci, Antonia ^a  

^a ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CIPROFLOXACIN; ISOLEUCINE; NALIDIXIC ACID; QUINOLINE DERIVED ANTIINFECTIVE AGENT; THREONINE;

AMINO ACID SUBSTITUTION; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BIOMEDICAL TECHNOLOGY ASSESSMENT; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; CAMPYLOBACTERIOSIS; DILUTION; DRUG CHOICE; GENE AMPLIFICATION; GENE MUTATION; GENE SEQUENCE; GENOTYPE; GYRA GENE; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POINT MUTATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RELIABILITY; SEROTYPE; SUSPENSION;

ANTI-BACTERIAL AGENTS; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; DNA GYRASE; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; FLUOROQUINOLONES; MUTATION, MISSENSE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI;

EID: 77956417066     PISSN: 15353141     EISSN: None     Source Type: Journal    
DOI: 10.1089/fpd.2009.0505     Document Type: Article

References (48)

1. Aarestrup FM and Engberg J. Antimicrobial resistance of thermophilic Campylobacter. Vet Res 2001;32:311-321.
2. Aarestrup FM and Wegenre HK. The effects of antimicrobial usage in food animals on the development of antimicrobial resistance of importance in humans in Campylobacter and Escherichia coli. Microbes Infect 1999;1:639-644.
3. Alonso R, Mateo E, Girbau C, Churruca E, Martinez I, and Fernandez-Astorga A. PCR-restriction fragment length polymorphism assay for detection of gyrA mutations associated with fluoroquinolone resistance in Campylobacter coli. Anti- microb Agents Chemother 2004;48:4886-4888.
4. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, and Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
5. Anonymous. Microbiology of Food and Animal Feeding Stuffs- Horizontal Method for the Detection and Enumeration of Campylobacter spp. (EN ISO 10272-1:2006). Geneva, Switzerland: International Organization for Standardization, 2006.
6. Bachoual R, Ouabdesselam S, Mory F, Soussy CJ, and Tankovic J. Single or double mutational alterations of gyrA associated with fluoroquinolone resistance in Campylobacter jejuni and Campylobacter coli. Microb Drug Resist 2001;7:257-261.
7. Baums IB, Goodwin KD, Kiesling T, Wanless D, Diaz MR, and Fell JW. Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand. Mar Pollut Bull 2007;54:521-536.
8. Beilei GE, McDermott PF, White DG, and Meng J. Role of the efflux pumps and topoisomerase mutations in fluoroquinolone resistance in Campylobacter jejuni and Campylobacter coli. Anti- microb Agents Chemother 2005;49:3347-3354.
9. Best EL, Powell EJ, Swift C, Grant KA, and Frost JA. Applicability of a rapid duplex real-time PCR assay for speciation of Campylobacter jejuni and Campylobacter coli directly from culture plates. FEMS Microbiol Lett 2003;229:237-241.
10. Borucki MK, Reynolds J, Call DR, Ward TJ, Page B, and Ka- dushin J. Suspension arrays for direct and high through-put subtyping of Listeria monocytogenes from genomic DNA. J Clin Microbiol 2005;43:3255-3259.
11. Bovers M, Diaz MR, Hagen F, Spanjaard L, Duim B, Visser CE, Hoogveld HL, Scharringa J, Hoepelman IM, Fell JW, and Boekhout T. Identification of genotypically diverse Cryptococcus neoformans and Cryptococcus gattii isolates by Luminex xMAP technology. J Clin Microbiol 2007;45:1874-1883.
12. Call DR, Satterwhite DM, and Soule M. Using DNA suspension arrays to identify library-independent markers for bacterial source tracking. Water Res 2007;41:3740-3746.
13. [CLSI] Clinical and Laboratory Standards Institute. Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals. Approved Standard, 3rd edition. Document M31-A3. Wayne, PA: CLSI, 2008.
14. Cokal Y, Caner V, Sen A, Cetin C, and Karagenc N. Campylo- bacter spp. and their antimicrobial resistance patterns in poultry: an epidemiological survey study in turkey. Zoonoses Public Health 2009;56:105-110.
15. Cooper R, Segal H, Lastovica AJ, and Elisha BG. Genetic basis of quinolone resistance and epidemiology of resistant and susceptible isolates of porcine Campylobacter coli strains. J Appl Microbiol 2002;93:241-249.
16. Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 1988;16:10881-10890.
17. Denis M, Soumet C, Rivoal K, Ermel G, Blivet D, Salvat G, and Colin P. Development of a m-PCR for simultaneous identification of Campylobacter jejuni and Campylobacter coli. Lett Appl Microbiol 1999;29:406-410.
18. Dunbar SA. Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection. Clin Chim Acta 2006;363:71-82.
19. Dunbar SA, Vander Zee CA, Oliver KG, Karem KL, and Ja- cobson JW. Quantitative, multiplexed detection of bacterial pathogens: DNA and protein applications of the Luminex LabMAP system. J Microbiol Methods 2003;53:245-252.
20. [EFSA] European Food Safety Authority. Report of the task force of zoonoses data collection including a proposal for a harmonized monitoring scheme of antimicrobial resistance in Salmonella in fowl (Gallus gallus), turkeys, and pigs and Campylobacter jejuni and C. coli in broilers. EFSA J 2007;96:1-46.
21. [EFSA] European Food Safety Authority. The Community Summary Report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in the European Union in 2008. EFSA J 2010;1496:1-288.
22. Eriksson R, Jobs M, Ekstrand C, Ullberg M, Herrmann B, Landegren U, Nilsson M, and Blomberg J. Multiplex and quantifiable detection of nucleic acid from pathogenic fungi using padlock probes, generic real time PCR and specific suspension array readout. J Microbiol Methods 2009;78:195-202.
23. Evans RM, Northey G, Sarvotham TS, Rigby CJ, Hopkins AL, and Thomas DR. Short-term and medium-term clinical outcomes of quinolone-resistant Campylobacter infection. Clin Infect Dis 2009;48:1500-1506.
24. Fitch BR, Sachen KL, Wilder SR, Burg MA, Lacher DW, Khalife WT, Whittam TS, and Young VB. Genetic diversity of Cam- pylobacter spp. isolates from retail chicken products and humans with gastroenteritis in Central Michigan. J Clin Microbiol 2005;43:4221-4224.
25. Griggs DJ, Gensberg K, and Piddock LJV. Mutations in gyrA gene of quinolone-resistant Salmonella serotypes isolated from humans and animals. Antimicrob Agents Chemother 1996;40:1009-1013.
26. Gu W, Siletzky RM, Wright S, Islam M, and Kathariou S. Antimicrobial susceptibility profiles and strain type diversity of Campylobacter jejuni isolates from turkeys in eastern North Carolina. Appl Environ Microbiol 2009;75:474-482.
27. Hakanen A, Jalava J, Kotilainen P, Jousimies-Somer H, Siitonen A, and Huovinen P. gyrA polymorphism in Campylobacter je- juni: detection of gyrA mutations in 162 C. jejuni isolates by single-stand conformation polymorphism and DNA sequencing. Antimicrob Agents Chemother 2002;46:2644-2647.
28. Huang CT, Wong WW, Li LH, Chiang CC, Chen BD, and Li SY. Genotyping of Chlamydia trachomatis by microsphere suspension array. J Clin Microbiol 2008;46:1126-1128.
29. Ivanova M, Ruiqing J, Matsushita M, Ogawa T, Kawai S, Ochiai N, Shivarov V, Maruya E, and Saji H. MBL2 single nucleotide polymorphism diversity among four ethnic groups as revealed by a bead-based liquid array profiling. Hum Immunol 2008;69:877-884.
30. Jesse TW, Englen MD, Pitternger-Alley LG, and Fedorka-Cray PJ. Two distinct mutations in gyrA lead to ciprofloxacin and nalidixic acid resistance in Campylobacter coli and Campylo- bacter jejuni isolated from chickens and beef cattle. J Appl Microbiol 2006;100:682-688.
31. Kinana AD, Cardinale E, Bahsoun I, Tall F, Sire JM, Breurec S, Garin B, Saad-Bouh Boye C, and Perrier-Gros-Claude JD. Campylobacter coli isolates derived from chickens in Senegal: diversity, genetic exchange with Campylobacter jejuni and quinolone resistance. Res Microbiol 2007;158:138-142.
32. Leblanc N, Gantelius J, Schwenk JM, Stohl K, Blomberg J, Andersson-Svahn H, and Belak S. Development of a magnetic bead microarray for simultaneous and simple detection of four pestiviruses. J Virol Methods 2009;155:1-9.
33. Lin J, Cagliero C, Guo B, Barton YW, Maurel MC, Payot S, and Zhang Q. Bile salts modulate expression of the CmeABC multidrug efflux pump in Campylobacter jejuni. J Bacteriol 2005;187:7417-7424. (Pubitemid 41507798)
34. Luangtongkum T, Jeon B, Han J, Plummer P, Logue CM, and Zhang Q. Antibiotic resistance in Campylobacter: emergence, transmission and persistence. Future Microbiol 2009;4:189-200.
35. Luo N, Sahin O, Lin J, Michel LO, and Zhang Q. In vivo selection of Campylobacter isolates with high levels of fluoroquinolone resistance associated with gyrA mutations and the function of the CmeABC efflux pump. Antimicrob Agents Chemother 2003;47:390-394.
36. Niwa H, Chuma T, Okamoto K, and Itoh K. Simultaneous detection of mutations associated with resistance to macrolides and quinolones in Campylobacter jejuni and C. coli using a PCR- line probe assay. Int J Antimicrob Agents 2003;22:374-379.
37. Ogden ID, Dallas JF, MacRae M, Rotariu O, Reay KW, Leitch M, Thomson AP, Sheppard SK, Maiden M, Forbes KJ, and Stra- chan JC. Campylobacter excreted into the environment by animal sources: prevalence, concentration shed and host association. Foodborne Pathog Dis 2009;6:1161-1170.
38. Page BT, Shields CE, Merz WG, and Kurtzman CP. Rapid identification of ascomycetous yeasts from clinical specimens by a molecular method based on flow cytometry and comparison with identifications from phenotypic assays. J Clin Microbiol 2006;44:3167-3171.
39. Payot S, Bolla JM, Corcoran D, Fanning S, Megraud F, and Zhang Q. Mechanisms of fluoroquinolone and macrolide resistance in Campylobacter spp. Microbes Infect 2006;8:1967-1971.
40. Piddock LJV, Ricci V, Pumbwe L, Everett MJ, and Griggs DJ. Fluoroquinolones resistance in Campylobacter species from man and animals: detection of mutations in topoisomerase genes. J Antimicrob Chemother 2003;51:19-26.
41. Sonnevend A, Rotimi VO, Kolodziejek J, Usmani A, Nowotny N, and Pal T. High level of ciprofloxacin resistance and its molecular background among Campylobacter jejuni strains isolated in the United Arab Emirates. J Med Microbiol 2006;55: 1533-1538.
42. Tracz DM, Backhouse PG, Olson AB, McCrea JK, Walsh JA, Ng LK, and Gilmour MW. Rapid detection of Vibrio species using liquid microsphere arrays and real-time PCR targeting the ftsZ locus. J Med Microbiol 2007;56:56-65.
43. Wallace J, Zhou Y, Usmani GN, Reardon M, Newburger P, Woda B, and Pihan G. BARCODE-ALL: accelerated and cost- effective genetic risk stratification in acute leukemia using spectrally addressable liquid bead microarrays. Leukemia 2003;17:1404-1410. (Pubitemid 36857350)
44. Wang Y, Huang WM, and Taylor DE. Cloning and nucleotide sequence of the Campylobacter jejuni gyrA gene and characterization of quinolone resistance mutations. Antimicrob Agents Chemother 1993;37:457-463.
45. Wilson DL, Abner SR, Newman TC, Mansfield LS, and Linz JE. Identification of ciprofloxacin-resistant Campylobacter jejuni by use of a fluorogenic PCR assay. J Clin Microbiol 2000;38:3971-3978.
46. Yang L, Tran DK, and Wang X. BADGE, Beads array for the detection of gene expression, a high-throughput diagnostic bioassay. Genome Res 2001;11:1888-1898.
47. Zirnstein G, Helsel L, Li Y, Swaminathan B, and Besser J. Characterization of gyrA mutations associated with fluor- oquinolone resistance in Campylobacter coli by DNA sequence analysis and MAMA PCR. FEMS Microbiol Lett 2000;1:1-7.
48. Zirnstein G, Li Y, Swaminathan B, and Angulo F. Cyprofloxacin resistance in Campylobacter jejuni isolates: detection of gyrA resistance mutations by mismatch amplification mutation assay PCR and DNA sequence analysis. J Clin Microbiol 1999;37:3276-3280.