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Volumn 5, Issue 5, 2010, Pages

Restriction site extension PCR: A novel method for high- throughput characterization of tagged DNA fragments and genome walking

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; ENDONUCLEASE KPNL; ENDONUCLEASE NSIL; ENDONUCLEASE PSTL; ENDONUCLEASE SACL; GENE PRODUCT; GENOMIC DNA; MUTANT PROTEIN; PROTEIN TOUCH4; RESTRICTION ENDONUCLEASE; UNCLASSIFIED DRUG;

EID: 77956412667     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0010577     Document Type: Article
Times cited : (41)

References (26)
  • 1
    • 0029360727 scopus 로고
    • Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
    • Liu YG, Mitsukawa N, Oosumi T, Whittier RF (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J 8: 457-463.
    • (1995) Plant J , vol.8 , pp. 457-463
    • Liu, Y.G.1    Mitsukawa, N.2    Oosumi, T.3    Whittier, R.F.4
  • 2
    • 13444257369 scopus 로고    scopus 로고
    • Mapping transposon insertion sites by touchdown PCR and hybrid degenerate primers
    • Levano-Garcia J, Verjovski-Almeida S, da Silva AC (2005) Mapping transposon insertion sites by touchdown PCR and hybrid degenerate primers. Biotechniques 38: 225-9.
    • (2005) Biotechniques , vol.38 , pp. 225-229
    • Levano-Garcia, J.1    Verjovski-Almeida, S.2    da Silva, A.C.3
  • 4
    • 0024431684 scopus 로고
    • In vivo footprinting of a muscle specific enhancer by ligation-mediated PCR
    • Mueller PR, Wold B (1989) In vivo footprinting of a muscle specific enhancer by ligation-mediated PCR. Science 246: 780-786.
    • (1989) Science , vol.246 , pp. 780-786
    • Mueller, P.R.1    Wold, B.2
  • 5
    • 84879798579 scopus 로고
    • A novel, rapid method for the isolation of terminal sequence from yeast artificial chromosome (YAC) clones
    • Riley J, Butler R, Ogilvie D, Finniear R, Jenner D, et al. (1990) A novel, rapid method for the isolation of terminal sequence from yeast artificial chromosome (YAC) clones. Nucleic Acids Res 19: 5395-5490.
    • (1990) Nucleic Acids Res , vol.19 , pp. 5395-5490
    • Riley, J.1    Butler, R.2    Ogilvie, D.3    Finniear, R.4    Jenner, D.5
  • 6
    • 0025310675 scopus 로고
    • Genomic walking and sequencing by oligocassette mediated polymerase chain reaction
    • Rosenthal A, Jones DSC (1990) Genomic walking and sequencing by oligocassette mediated polymerase chain reaction. Nucleic Acids Research 18: 3095-3096.
    • (1990) Nucleic Acids Research , vol.18 , pp. 3095-3096
    • Rosenthal, A.1    Jones, D.S.C.2
  • 7
    • 0026207423 scopus 로고
    • Vectorette PCR: A novel approach to genomic walking
    • Arnold C, Hodgson IJ (1991) Vectorette PCR: a novel approach to genomic walking. PCR Methods Appl 1: 39-42.
    • (1991) PCR Methods Appl , vol.1 , pp. 39-42
    • Arnold, C.1    Hodgson, I.J.2
  • 8
    • 0026532763 scopus 로고
    • Effects of different DNA polymerase in ligationmediated PCR: Enhanced genomic sequencing and in vivo footprinting
    • Garrity PA, Wold BJ (1992) Effects of different DNA polymerase in ligationmediated PCR: enhanced genomic sequencing and in vivo footprinting. Proc Natl Acad Sci USA 89: 1021-1025.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1021-1025
    • Garrity, P.A.1    Wold, B.J.2
  • 9
    • 0026595076 scopus 로고
    • Sequence specific generation of a DNA panhandle permits PCR amplification of unknown flanking
    • Jones DH, Winistorfer SC (1992) Sequence specific generation of a DNA panhandle permits PCR amplification of unknown flanking. DNA Nucleic Acids Research 20: 595-600.
    • (1992) DNA Nucleic Acids Research , vol.20 , pp. 595-600
    • Jones, D.H.1    Winistorfer, S.C.2
  • 10
    • 0028042057 scopus 로고
    • A rapid genomic walking technique based on ligation-mediated PCR and magnetic separation technology
    • Warshawsky D, Miller L (1994) A rapid genomic walking technique based on ligation-mediated PCR and magnetic separation technology. Biotechniques 16: 792-798.
    • (1994) Biotechniques , vol.16 , pp. 792-798
    • Warshawsky, D.1    Miller, L.2
  • 11
    • 0032431243 scopus 로고    scopus 로고
    • Strategies for cloning unknown cellular flanking DNA sequences from foreign integrants
    • Hui EK, Wang PC, Lo SJ (1998) Strategies for cloning unknown cellular flanking DNA sequences from foreign integrants. Cell Mol Life Sci 54: 1403-1411.
    • (1998) Cell Mol Life Sci , vol.54 , pp. 1403-1411
    • Hui, E.K.1    Wang, P.C.2    Lo, S.J.3
  • 12
    • 0344131378 scopus 로고    scopus 로고
    • Screening of transgenic plants by amplification of unknown genomic DNA flanking T-DNA
    • Spertini D, Beliveau C, Bellemare G (1999) Screening of transgenic plants by amplification of unknown genomic DNA flanking T-DNA. Biotechniques 27: 308-314.
    • (1999) Biotechniques , vol.27 , pp. 308-314
    • Spertini, D.1    Beliveau, C.2    Bellemare, G.3
  • 14
    • 0021733780 scopus 로고
    • Directional cloning of DNA fragments at a large distance from an initial probe: A circularization method
    • Collins FS, Weissman SM (1984) Directional cloning of DNA fragments at a large distance from an initial probe: a circularization method. Proc Natl Acad Sci USA 81: 6812-6816.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 6812-6816
    • Collins, F.S.1    Weissman, S.M.2
  • 15
    • 0023691425 scopus 로고
    • Genetic applications of an inverse polymerase chain reaction
    • Ochman H, Gerber AS, Hartl DL (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120: 621-623.
    • (1988) Genetics , vol.120 , pp. 621-623
    • Ochman, H.1    Gerber, A.S.2    Hartl, D.L.3
  • 16
    • 0023787609 scopus 로고
    • A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences
    • Triglia T, Peterson MG, Kemp DJ (1988) A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res 16: 8186.
    • (1988) Nucleic Acids Res , vol.16 , pp. 8186
    • Triglia, T.1    Peterson, M.G.2    Kemp, D.J.3
  • 17
    • 0024584243 scopus 로고
    • Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus
    • Silver J, Keerikatte V (1989) Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus. Journal of Virology 63: 1924-1928.
    • (1989) Journal of Virology , vol.63 , pp. 1924-1928
    • Silver, J.1    Keerikatte, V.2
  • 18
    • 0025083852 scopus 로고
    • A single oligonucleotide can be used to rapidly isolate DNA sequences flanking a transposon Tn5 insertion by the polymerase chain reaction
    • Rich JJ, Willis DK (1990) A single oligonucleotide can be used to rapidly isolate DNA sequences flanking a transposon Tn5 insertion by the polymerase chain reaction. Nucleic Acids Research 18: 6673-6676.
    • (1990) Nucleic Acids Research , vol.18 , pp. 6673-6676
    • Rich, J.J.1    Willis, D.K.2
  • 20
    • 0027380791 scopus 로고
    • PCR priming from the restriction endonuclease site 39 extension
    • Upcroft P, Healey A (1993) PCR priming from the restriction endonuclease site 39 extension. Nucleic Acids Research 21: 4854.
    • (1993) Nucleic Acids Research , vol.21 , pp. 4854
    • Upcroft, P.1    Healey, A.2
  • 21
    • 0029392611 scopus 로고
    • Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase
    • Xu W, Purugganan MM, Polisensky DH, Antosiewicz DM, Fry SC, et al. (1995) Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase. Plant Cell 7: 1555-1567.
    • (1995) Plant Cell , vol.7 , pp. 1555-1567
    • Xu, W.1    Purugganan, M.M.2    Polisensky, D.H.3    Antosiewicz, D.M.4    Fry, S.C.5
  • 22
    • 33645024238 scopus 로고    scopus 로고
    • Identification of plant stressresponsive determinants in arabidopsis by large-scale forward genetic screens
    • Koiwa H, Bressan RA, Hasegawa PM (2006) Identification of plant stressresponsive determinants in arabidopsis by large-scale forward genetic screens. J Exp Bot 57: 1119-1128.
    • (2006) J Exp Bot , vol.57 , pp. 1119-1128
    • Koiwa, H.1    Bressan, R.A.2    Hasegawa, P.M.3
  • 24
    • 0036407705 scopus 로고    scopus 로고
    • Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis
    • Krysan PJ, Young JC, Jester PJ, Monson S, Copenhaver G, et al. (2002) Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis. OMICS 6: 163-174.
    • (2002) OMICS , vol.6 , pp. 163-174
    • Krysan, P.J.1    Young, J.C.2    Jester, P.J.3    Monson, S.4    Copenhaver, G.5
  • 25
    • 0024199623 scopus 로고
    • Basic processes underlying Agrobacterium-mediated T-DNA transfer to plant cells
    • Zambryski P (1988) Basic processes underlying Agrobacterium-mediated T-DNA transfer to plant cells. Annu Rev Genet 22: 1-30.
    • (1988) Annu Rev Genet , vol.22 , pp. 1-30
    • Zambryski, P.1
  • 26
    • 2442670757 scopus 로고    scopus 로고
    • The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems
    • Nardmann J, Ji J, Werr W, Scanlon MJ (2004) The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems. Development 131: 2827-2839.
    • (2004) Development , vol.131 , pp. 2827-2839
    • Nardmann, J.1    Ji, J.2    Werr, W.3    Scanlon, M.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.