QTL analysis of root traits as related to phosphorus efficiency in soybean

Annals of Botany

Volumn 106, Issue 1, 2010, Pages 223-234

  Liang, Quan ^a   Cheng, Xiaohui ^b,c   Mei, Mantong ^b   Yan, Xiaolong ^a   Liao, Hong ^a  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b Yuannan Agricultural University   (China)

^c INSTITUTE OF ANIMAL SCIENCE   (China)

Author keywords

Glycine max; Phosphorus efficiency; Quantitative trait loci (QTLs); Root traits; Soybean

Indexed keywords

PHOSPHORUS;

ACID SOIL; BIOMASS; CLIMATIC REGION; CLUSTER ANALYSIS; CROP YIELD; GENETIC MARKER; GENOTYPE; GROWTH RATE; IDENTIFICATION METHOD; INBREEDING; NUTRIENT AVAILABILITY; PHOSPHORUS; PRIMARY PRODUCTION; QUANTITATIVE ANALYSIS; RECOMBINATION; ROOT ARCHITECTURE; ROOT SYSTEM; SOYBEAN;

ARTICLE; BIOMASS; GENETIC LINKAGE; GENETICS; METABOLISM; QUANTITATIVE TRAIT LOCUS; SOYBEAN;

BIOMASS; LINKAGE (GENETICS); PHOSPHORUS; QUANTITATIVE TRAIT LOCI; SOYBEANS; GENETIC LINKAGE;

GLYCINE MAX;

EID: 77956362464     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcq097     Document Type: Article

References (52)

1. Abbas M, Monib M, Rammah A, Fayez M, Hegazi N. 2001. Intercropping of sesbania (Sesbania sesban) and leucaena (Leucaena leucocephala) with five annual grasses under semi-arid conditions as affected by inoculation with specific rhizobia and associative diazotrophs. Agronomy 21:517-525.
2. Beaver JS, Osorno JM. 2009. Achievements and limitations of contemporary common bean breeding using conventional and molecular approaches. Euphytica 168:145-175.
3. Beebe SE, Rojas-Pierce M, Yan XL, et al. 2006. Quantitative trait loci for root architecture traits correlated with phosphorus acquisition in common bean. Crop Science 46:413-423.
4. Blair MW, Sandoval TA, Caldas GV, Beebe SE, Paez MI. 2009. Quantitative trait locus analysis of seed phosphorus and seed phytate content in a recombinant inbred line population of common bean. Crop Science 49:237-246.
5. Boddey RM, Sa JCD, Alves BJR, Urquiaga S. 1997. The contribution of biological nitrogen fixation for sustainable agricultural systems in the tropics. Soil Biology and Biochemistry 29:787-799.
6. Bryla D, Koide RT. 1998. Mycorrhizal response of two tomato genotypes relates to their ability to acquire and utilize phosphorus. Annals of Botany 82:849-857.
7. Chen JY, Xu L, Cai YL, Xu J. 2009. Identification of QTLs for phosphorus utilization efficiency in maize (Zea mays L.) across P levels. Euphytica 167:245-252.
8. Cichy KA, Blair MW, Mendoza CHG, Snapp SS, Kelly JD. 2009. QTL analysis of root architecture traits and low phosphorus tolerance in an Andean bean population. Crop Science 49:59-68.
9. Champoux MC, Wang G, Sarkarung S, et al. 1995. Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theoretical and Applied Genetics 90:969-981.
10. Cregan PB, Jarvik T, Bush AL, et al. 1999. An integrated genetic linkage map of the soybean genome. Crop Science 39:1464-1490.
11. Dakora FD, Phillips DA. 2002. Root exudates as mediators of mineral acquisition in low-nutrient environments. Plant and Soil 245:35-47.
12. de Dorlodot S, Forster B, Pages L, Price A, Tuberosa R, Draye X. 2007. Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science 12:474-481.
13. Epstein E. 2004. Plant biologists need to get back to their roots. Nature 430:804-805.
14. Hinsinger P. 2001. Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review. Plant and Soil 237:173-195.
15. Jansen RC. 1993. Interval mapping of multiple quantitative trait loci. Genetics 135:205-211.
16. Jansen RC. 1994. Controlling the Type I and Type II errors in mapping quantitative trait loci. Genetics 138:871-881.
17. Lander ES, Botstein D. 1989. Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185-199.
18. Li JZ, Xie Y, Dai AY, Liu LF, Li ZC. 2009. Root and shoot traits responses to phosphorus deficiency and QTL analysis at seedling stage using introgression lines of rice. Journal of Genetics and Genomics 36:173-183.
19. Li YD, Wang YJ, Tong YP, Gao JG, Zhang JS, Chen SY. 2005. QTL mapping of phosphorus deficiency tolerance in soybean (Glycine max L. Merr.). Euphytica 142:137-142.
20. Li ZX, Ni ZF, Peng HR, et al. 2007. Molecular mapping of QTLs for root response to phosphorus deficiency at seedling stage in wheat (Triticum aestivum L.). Proceedings of the National Academy of Sciences 17:1177-1184.
21. Liao H, Yan XL, Rubio G, Beebe SE, Blair MW, Lynch JP. 2004. Genetic mapping of basal root gravitropism and phosphorus acquisition efficiency in common bean. Functional Plant Biology 31:959-970.
22. Liu F, Zhuang BC, Zhang JS, Chen SY. 2000. Construction and analysis of soybean genetic map. Acta Genetica Sinica 27:1018-1026.
23. Lynch JP. 1995. Root architecture and plant productivity. Plant Physiology 109:7-13.
24. Lynch JP, Brown KM. 2001. Topsoil foraging - an architectural adaptation of plants to low phosphorus availability. Plant and Soil 237:225-237.
25. Murphy J, Riley JP. 1962. A modified single solution method for the determination of phosphorus in natural waters. Analytica Chimica Acta 27:31-36.
26. Price AH. 2006. Believe it or not, QTLs are accurate! Trends in Plant Science 11:213-216.
27. Price AH, Tomos AD. 1997. Genetic dissection of root growth in rice (Oryza sativa L.). Mapping quantitative trait loci using molecular markers. Theoretical and Applied Genetics 95:143-152.
28. Raghothama KG. 1999. Phosphate acquisition. Annual Review of Plant Physiology and Plant Molecular Biology 50:665-693.
29. Raghothama KG. 2000. Phosphorus acquisition: plant in the driver's seat! Trends in Plant Science 5:412-413.
30. Reiter RS, Coor JG, Sussman MR, Gabelman WH. 1991. Genetic analysis of tolerance to low-phosphorus stress in maize using restriction fragment length polymorphisms. Theoretical and Applied Genetics 82:561-568.
31. Sabouri H. 2009. QTL detection of rice grain quality traits by microsatellite markers using an indica rice (Oryza sativa L.) combination. Journal of Genetics 88:81-85.
32. Sample EC, Soper RJ, Racz GJ. 1980. Reaction of phosphate fertilizers in soils. In: Khasawneh FE, Sample EC, Kamprath EJ. eds. The role of phosphorus in agriculture. Madison, WI: American Society of Agronomy, 263-310.
33. Shimizu A, Kato K, Komatsu A, Motomura K, Ikehashi H. 2008. Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits. Theoretical and Applied Genetics 117:987-996.
34. Song QJ, Marek LF, Shoemaker RC, et al. 2004. A new integrated genetic linkage map of the soybean. Theoretical and Applied Genetics 109:122-128.
35. Stam P. 1993. Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. The Plant Journal 3:739-744.
36. Steele KA, Price AH, Shashidhar HE, Witcombe JR. 2006. Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety. Theoretical and Applied Genetics 112:208-221.
37. Stevenson FJ. 1986. Cycles of soil: carbon, nitrogen, phosphorus, sulfur, micronutrients. New York: John Wiley & Sons Inc.
38. Su CC, Cheng XN, Zhai HQ, Wan JM. 2002. Detection and analysis of QTL for resistanceto the brown planthopper, Nilaparvata lugens (Stal), in rice (Oryza sativa L.), using backcross inbred lines. Acta Genetica Sinica 29:332-338.
39. Swarbrick PJ, Scholes JD, Press MC, Slate J. 2009. A major QTL for resistance of rice to the parasitic plant Striga hermonthica is not dependent on genetic background. Pest Management Science 65:528-532.
40. Van Ooijen JW. 2004. MapQTL 4.0, software for the mapping of quantitative trait loci in experimental populations. Wageningen, The Netherlands: Kyazma BV.
41. Van Ooijen JW, Voorrips RE. 2001. JoinMap3.0, software for the calculation of genetic maps. Wageningen, The Netherlands: Kyazma BV.
42. Vance CP, Uhde-Stone C, Allan DL. 2003. Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. New Phytologist 157:423-447.
43. Wang J, Fang XJ. 2003. Isolation of plant DNA. Molecular Plant Breeding 1:281-288.
44. Yadav R, Courtois B, Huang N, McLaren G. 1997. Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice. Theoretical and Applied Genetics 94:619-632.
45. Yan XL, Wu P, Ling HQ, Xu GH, Xu FS, Zhang QF. 2006. Plant nutriomics in China: an overview. Annals of Botany 98:473-482.
46. Zhang D, Cheng H, Geng LY, et al. 2009. Detection of quantitative trait loci for phosphorus deficiency tolerance at soybean seedling stage. Euphytica 167:313-322.
47. Zhao J, Fu JB, Liao H, et al. 2004. Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm. Chinese Science Bulletin 49:1611-1620.
48. Zhu J (ed.) 2002. Genetics, 3rd edn. Beijing: Chinese Agricultural Press.
49. Zhu JM, Kaeppler SM, Lynch JP. 2005a. Mapping of QTL controlling root hair length in maize (Zea mays L.) under phosphorus deficiency. Plant and Soil 270:299-310.
50. Zhu JM, Kaeppler SM, Lynch JP. 2005b. Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply. Theoretical and Applied Genetics 111:688-695.
51. Zhu JM, Mickelson SM, Kaeppler SM, Lynch JP. 2006. Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels. Theoretical and Applied Genetics 113:1-10.
52. Zuo SM, Yin YJ, Zhang L, Zhang YF, Chen ZX, Pan XB. 2007. Breeding value and further mapping of a QTL qSB-11 conferring the rice sheath blight resistance. Zhongguo Shuidao Kexue 21:136-142.