Multiply primed rolling-circle amplification method for the amplification of circular DNA viruses

Cold Spring Harbor Protocols

Volumn 5, Issue 4, 2010, Pages

  Stevens, Hans ^a   Rector, Annabel ^a   van Ranst, Marc ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA;

ANALYTIC METHOD; ARTICLE; CLINICAL PROTOCOL; DNA TEMPLATE; DNA VIRUS; GENE AMPLIFICATION; GENOME ANALYSIS; MULTIPLY PRIMED ROLLING CIRCLE AMPLIFICATION; NONHUMAN; POLYMERASE CHAIN REACTION; PROCESS OPTIMIZATION; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS TYPING;

DNA VIRUSES;

EID: 77956271755     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.prot5415     Document Type: Article

References (6)

1. Bennett MD, Woolford L, Stevens H, Van Ranst M, Oldfield T, Slaven M, O'Hara AJ, Warren KS, Nicholls PK. 2008. Genomic characterization of a novel virus found in papillomatous lesions from a southern brown bandicoot (Isoodon obesulus) in Western Australia. Virology 376: 173-182.
2. Fire A, Xu SQ. 1995. Rolling replication of short DNA circles. Proc Natl Acad Sci 92: 4641-4645.
3. Johne R, Muller H, Rector A, van Ranst M, Stevens H. 2009. Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol 17: 205-211.
4. Liu D, Daubendiek SL, Zillman MA, Ryan K, Kool ET. 1996. Rolling circle DNA synthesis: Small circular oligonucleotides as efficient templates for DNA polymerases. J Am Chem Soc 118: 1587-1594.
5. Rector A, Tachezy R, Van Ranst M. 2004. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol 78: 4993-4998.
6. Woolford L, Rector A, Van Ranst M, Ducki A, Bennett MD, Nicholls PK, Warren KS, Swan RA, Wilcox GE, O'Hara AJ. 2007. A novel virus detected in papillomas and carcinomas of the endangered western barred bandicoot (Perameles bougainville) exhibits genomic features of both the Papillomaviridae and Polyomaviridae. J Virol 81: 13280-13290.