A novel virus detected in papillomas and carcinomas of the endangered western barred bandicoot (Perameles bougainville) exhibits genomic features of both the Papillomaviridae and Polyomaviridae

Journal of Virology

Volumn 81, Issue 24, 2007, Pages 13280-13290

  Woolford, Lucy ^a   Rector, Annabel ^b   Van Ranst, Marc ^b   Ducki, Andrea ^a   Bennett, Mark D ^a   Nicholls, Philip K ^a   Warren, Kristin S ^a   Swan, Ralph A ^a   Wilcox, Graham E ^a   O'Hara, Amanda J ^a  

^a MURDOCH UNIVERSITY   (Australia)

^b REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS SMALL T ANTIGEN; VIRUS T ANTIGEN;

ARTICLE; BANDICOOT PAPILLOMATOSIS CARCINOMATOSIS VIRUS TYPE 1; CARCINOMA; CARCINOMATOSIS; EVOLUTION; GENE AMPLIFICATION; GENE SEQUENCE; GENOMICS; MARSUPIAL; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PAPILLOMA; PAPILLOMA VIRUS; PAPILLOMATOSIS; POLYMERASE CHAIN REACTION; POLYOMA VIRUS; PRIORITY JOURNAL; PROTEIN STRUCTURE; REINFORCEMENT; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; TAXONOMY; UNINDEXED SEQUENCE; VIRAL GENETICS; VIRUS CLASSIFICATION; VIRUS DETECTION; VIRUS STRAIN;

ANIMALS; ANTIGENS, VIRAL, TUMOR; CARCINOMA; CONSERVATION OF NATURAL RESOURCES; DNA VIRUS INFECTIONS; DNA VIRUSES; DNA, VIRAL; EVOLUTION, MOLECULAR; GENOME, VIRAL; MARSUPIALIA; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PAPILLOMA; PAPILLOMAVIRIDAE; POLYMERASE CHAIN REACTION; POLYOMAVIRIDAE; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

PAPILLOMAVIRIDAE; PERAMELES BOUGAINVILLE; POLYOMAVIRIDAE; POLYOMAVIRUS;

EID: 37149051920     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01662-07     Document Type: Article

References (59)

1. Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Antonsson, A., and N. A. McMillan. 2002. Healthy skin of many animal species harbors papillomaviruses which are closely related to their human counterparts. J. Virol. 76:12537-12542.
3. Antonsson, A., and N. A. McMillan. 2006. Papillomavirus in healthy skin of Australian animals. J. Gen. Virol. 87:3195-3200.
4. Brandsma, J. 1994. Animal models of human-papillomavirus- associated oncogenesis. Intervirology 37:189-200.
5. Brodsky, J. L., and J. M. Pipas. 1998. Polyomavirus T antigens: molecular chaperones for multiprotein complexes. J. Virol. 72:5329-5334.
6. Cantalupo, P., A. Doering, C. S. Sullivan, A. Pal, K. W. C. Peden, A. M. Lewis, and J. M. Pipas. 2005. Complete nucleotide sequence of Polyomavirus SA12. J. Virol. 79:13094-13104.
7. Castresana, J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17:540-552.
8. Chan, S.-Y., H. Delius, A. L. Halpern, and H. Bernard. 1995. Analysis of genomic sequences of 95 papillomavirus types: uniting typing, phylogeny, and taxonomy. J. Virol. 69:3074-3083.
9. Cole, C. N., and S. D. Conzen. 2001. Polyomaviridae: The viruses and their replication, p. 2141-2174. In D. M. Knipe and P. M. Howley (ed.), Field's virology, 4th ed., vol. 2. Lippincott Williams and Wilkins, Philadelphia, PA.
10. Crandall, K. A., M. Perez-Losada, R. G. Christensen, D. A. McClellan, and R. P. Viscidi. 2005. Phylogenomics and molecular evolution of polyomaviruses. In N. Ahsan (ed.), Polyomaviruses and human diseases, vol. 577. Springer, New York, NY.
11. DeCaprio, J. A., J. W. Ludlow, and J. Figge. 1988. SV40 large tumor antigen forms a specific complex with the product of the retinoblastoma susceptibility gene. Cell 54:275-283.
12. Delius, H., M. Van Ranst, A. B. Jenson, H. zur Hausen, and J. P. Sundberg. 1994. Canine oral papillomavirus genomic sequence: a unique 1.5-kb intervening sequence between the E2 and L2 open reading frames. Virology 204:447-452.
13. de Villiers, E., C. Fauquet, T. R. Broker, H. Bernard, and H. zur Hausen. 2004. Classification of papillomaviruses. Virology 324:17-27.
14. Forslund, O., A. Antonsson, P. Nordin, B. Stenquist, and B. G. Hansson. 1999. A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin. J. Gen. Virol. 80:2437-2443.
15. Gaynor, A. M., D. M. Nissen, D. M. Whiley, I. M. Mackay, P. F. Lambert, W. Guang, D. C. Brennan, G. A. Storch, T. P. Sloots, and D. Wang. 2007. Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS Pathog. 3:1-10.
16. Gilbert, M. T. P., T. Haselkorn, M. Bunce, J. J. Sanchez, S. B. Lucas, L. D. Jewell, E. Van Marck, and M. Worobey. 2007. The isolation of nucleic acids from fixed, paraffin-embedded tissues - which methods are useful when? PLoS ONE 2:e537.
17. Graffi, A., T. Schramm, I. Graffi, D. Bierwolf, and E. Bender. 1968. Virus associated skin tumors of the Syrian hamster: preliminary note. J. Natl. Cancer Inst. 40:867-873.
18. Gravitt, P. E., C. L. Peyton, T. Q. Alessi, C. M. Wheeler, A. Coutlee, A. Hildesheim, M. H. Schiffman, D. R. Scott, and R. J. Apple. 2000. Improved amplification of genital papillomaviruses. J. Clin. Microbiol. 38:357-361.
19. Groff, D. E., and W. D. Lancaster. 1985. Molecular cloning and nucleotide sequence of deer papillomavirus. J. Virol. 56:85-91.
20. Guerin, J., J. Gelfi, L. Dubois, A. Vuillaume, C. Boucraut-Baralon, and J. Pingret. 2000. A novel polyomavirus (Goose Hemorrhagic Polyomavirus) is the agent of hemorrhagic nephritis enteritis of geese. J. Virol. 74:4523-4529.
21. Hall, K. T., M. E. B. Zajdel, and G. E. Blair. 1999. Analysis of DNA virus proteins involved in neoplastic transformation, p. 209-245. In A. J. Cann (ed.), DNA viruses: a practical approach. Oxford University Press, Oxford, United Kingdom.
22. Howley, P. M., and D. R. Lowy. 2001. Papillomaviruses and their replication, p. 2197-2230. In D. M. Knipe and P. M. Howley (ed.), Field's virology, 4th ed., vol. 2. Lippincott Williams and Wilkins, Philadelphia, PA.
23. Jenson, A. B., J. D. Rosenthal, C. Olsen, F. Pass, W. D. Lancaster, and K. Shah. 1980. Immunologic relatedness of papillomaviruses from different species. J. Natl. Cancer Inst. 64:495-500.
24. Johne, R., D. Enderlein, H. Nieper, and H. Muller. 2005. Novel polyomavirus detected in the feces of a chimpanzee by nested broad-spectrum PCR. J. Virol. 79:3883-3887.
25. Johne, R., W. Wittig, D. Fernandez-de-Luco, U. Hofle, and H. Muller. 2006. Characterization of two novel polyomaviruses of birds by using multiply primed rolling-circle amplification of their genomes. J. Virol. 80:3523-3531.
26. Kocher, T. D., W. K. Thomas, S. V. Meyer, S. V. Edwards, S. Paabo, F. X. Villablanca, and A. C. Wilson. 1989. Dynamics of mtDNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86:6196-6200.
27. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
28. Lowy, R. L., and P. M. Howley. 2001. Papillomaviruses, p. 2231-2265. In D. M. Knipe and P. M. Howley (ed.), Field's virology, 4th ed., vol. 2. Lippincott Williams and Wilkins, Philadelphia, PA.
29. Luo, D., H. Muller, X. B. Tang, and G. Hobom. 1994. Expression and DNA binding of budgerigar fledgling disease virus large T antigen. J. Gen. Virol. 75:1267-1280.
30. Major, E. O. 2001. Human polyomavirus, p. 2175-2196. In D. M. Knipe and P. M. Howley (ed.), Field's virology, 4th ed., vol. 2. Lippincott Williams and Wilkins, Philadelphia, PA.
31. Martens, A., A. De Moor, and R. Ducatelle. 2001. PCR detection of bovine papilloma virus DNA in superficial swabs and scrapings from equine sarcoids. Vet. J. 161:280-286.
32. Muller, H., and R. Nitschke. 1986. A polyoma-like virus associated with acute disease of fledgling budgerigars (Melopsittacus undulatus). Med. Microbiol. Immunol. 175:1-13.
33. Narechania, A., Z. Chen, R. DeSalle, and R. D. Burk. 2005. Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses. J. Virol. 79:15503-15510.
34. Nicholas, K. B., H. B. Nicholas, and D. W. Deerfield. 1997. GeneDoc: analysis and visualization of genetic variation. EMBnet News 4:1-4.
35. Perez-Losada, M., R. G. Christensen, D. A. McClellan, B. J. Adams, R. P. Viscidi, J. C. Demma, and K. A. Crandall. 2006. Comparing phylogenetic codivergence between polyomaviruses and their hosts. J. Virol. 80:5663-5669.
36. Perrott, M. R. F., J. Meers, G. E. Greening, S. E. Farmer, I. W. Lugton, and C. R. Wilks. 2000. A new papillomavirus of possums (Trichosurus vulpecula) associated with typical wart-like lesions. Arch. Virol. 145:1247-1255.
37. Pipas, J. M. 1992. Common and unique features of T antigens encoded by the polyomavirus group. J. Virol. 66:3979-3985.
38. Rector, A., K. Doorslaer, M. Bertelsen, I. K. Barker, R. Olberg, P. Lemey, J. P. Sundberg, and M. Van Ranst. 2005. Isolation and cloning of the raccoon (Procyon lotor) papillomavirus type 1 by using degenerate papillomavirus-specific primers. J. Gen. Virol. 86:2029-2033.
39. Rector, A., P. Lemey, R. Tachezy, S. Mostmans, S. Ghim, K. Van Doorslaer, M. Roelke, M. Bush, R. J. Montali, J. O. Joslin, R. D. Burk, A. B. Jenson, J. P. Sundberg, B. Shapiro, and M. Van Ranst. 2007. Ancient papillomavirus-host co-speciation in Felidae. Genome Biol. 8:R57.
40. Rector, A., R. Tachezy, and M. Van Ranst. 2004. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J. Virol. 78:4993-4998.
41. Richards, J. D. 2003. Report on threatened Shark Bay marsupials, western barred bandicoot Permaeles bougainville, burrowing bettong Bettongia lesueur lesueur, banded hare-wallaby Lagostrophus facsiatus fasciatus, and rufous hare-wallabies Lagostrophus bernieri and Lagorchestes hirsutus dorreae, within the Shark Bay region. CSIRO, p. 1-90.
42. Sambrook, J. 1978. The molecular biology of the papovaviruses, p. 589-672. In D. P. Nayak (ed.), The molecular biology of animal viruses, 2nd ed. Marcel Dekker, New York, NY.
43. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
44. Scherneck, S., R. Ulrich, and F. Feunteun. 2001. The hamster Polyomavirus - a brief review of recent knowledge. Viral Genes 21:93-101.
45. Seebeck, J. H., P. R. Brown, R. L. Wallis, and C. M. Kemper. 1990. Bandicoots and bilbies. Surrey, Beatty & Sons Pty. Ltd. Australia, Chipping Norton, NSW, Australia.
46. Short, J., B. Turner, C. Majors, and J. Leone. 1997. The fluctuating abundance of endangered mammals on Bernier and Dorre Islands, Western Australia - conservation implications. Aust. Mammal. 20:53-61.
47. Stanley, M. A., P. J. Masterson, and P. K. Nicholls. 1997. In vitro and animal models for antiviral therapy in papillomavirus infections. Antivir. Chem. Chemother. 8:381-400.
48. Sundberg, J. P., M. K. O'Banion, A. Shima, C. Knupp, and M. E. Reichmann. 1998. Papillomas and carcinomas associated with a papillomavirus in European harvest mice (Micromys minutus). Vet. Pathol. 25:356-361.
49. Sundberg, J. P., M. Van Ranst, R. D. Burk, and A. B. Jenson. 1997. The nonhuman (animal) papillomaviruses: host range, epitope conservation, and molecular diversity, p. 47-68. In G. Gross and G. von Krogh (ed.), Human papillomavirus infections in dermatovenereology. CRC Press, Boca Raton, FL.
50. Tachezy, R., G. Duson, A. Rector, A. B. Jenson, J. P. Sundberg, and M. Van Ranst. 2002. Cloning and genomic characterisation of Felis domesticus papillomavirus type 1. Virology 301:313-321.
51. Terai, M., and R. D. Burk. 2002. Felis domesticus papillomavirus, isolated from a skin lesion, is related to canine oral papillomavirus and contains a 1.3 kb non-coding region between the E2 and L2 open reading frames. J. Gen. Virol. 83:2303-2307.
52. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
53. Tjian, R. 1978. The binding site on SV40 DNA for a T antigen related protein. Cell 13:165-179.
54. Van Ranst, M., J. B. Kaplan, J. P. Sundberg, and R. D. Burk. 1995. Molecular evolution of papillomaviruses •. In A. Gibbs, C. H. Calister, and F. Garcia-Arenal (ed.), Molecular basis of virus evolution. Cambridge University Press, Cambridge, United Kingdom.
55. Varsani, A., E. van der Walt, L. Heath, E. P. Rybicki, A. L. Williamson, and D. P. Martin. 2006. Evidence of ancient papillomavirus recombination. J. Gen. Virol. 87:2527-2531.
56. Walker, J. E., M. Saraste, M. J. Runswick, and N. J. Gay. 1982. Distantly related sequences in the α- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1:945-951.
57. Woolford, L., A. J. O'Hara, M. D. Bennett, M. Slaven, R. Swan, J. A. Friend, A. Duckl, C. Sims, S. Hill, P. K. Nicholls, and K. S. Warren. Cutaneous papillomatosis and carcinomatosis in the western barred bandicoot (Perameles bougainville). Vet. Pathol., in press.
58. Xia, X., and X. Xie. 2001. DAMBE: software package for data analysis in molecular biology. J. Hered. 92:371-373.
59. zur Hausen, H. 1996. Papillomavirus infections - a major cause of human cancers. Biochim. Biophys. Acta 1288:55-78.