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Volumn 161, Issue 7, 2010, Pages 583-589

Two non-consensus Clp binding sites are involved in upregulation of the gum operon involved in xanthan polysaccharide synthesis in Xanthomonas campestris pv. campestris

Author keywords

Clp; Clp binding site; CRP homologue; Transcription activation; Xanthan polysaccharide; Xanthomonas campestris

Indexed keywords

CYCLIC GMP; ENDOPEPTIDASE CLP; PALINDROMIC DNA; RECEPTOR PROTEIN; XANTHAN;

EID: 77956271682     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2010.05.012     Document Type: Article
Times cited : (11)

References (39)
  • 1
    • 0031688984 scopus 로고    scopus 로고
    • Xanthan gum biosynthesis and application: a biochemical/genetic perspective
    • Becker A., Katzen F., Puhler A., Ielpi L. Xanthan gum biosynthesis and application: a biochemical/genetic perspective. Appl. Microbiol. Biotechnol. 1998, 50:145-152.
    • (1998) Appl. Microbiol. Biotechnol. , vol.50 , pp. 145-152
    • Becker, A.1    Katzen, F.2    Puhler, A.3    Ielpi, L.4
  • 2
    • 0023894726 scopus 로고
    • Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites
    • Berg O.G., von Hippel P.H. Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites. J. Mol. Biol. 1988, 200:709-723.
    • (1988) J. Mol. Biol. , vol.200 , pp. 709-723
    • Berg, O.G.1    von Hippel, P.H.2
  • 4
    • 0032698634 scopus 로고    scopus 로고
    • Transcription activation by catabolite activator protein (CAP)
    • Busby S., Ebright R.H. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 1999, 293:199-213.
    • (1999) J. Mol. Biol. , vol.293 , pp. 199-213
    • Busby, S.1    Ebright, R.H.2
  • 6
    • 0033426873 scopus 로고    scopus 로고
    • The molecular genetics of virulence of Xanthomonas campestris
    • Chan J.W., Goodwin P.H. The molecular genetics of virulence of Xanthomonas campestris. Biotechnol. Adv. 1999, 17:489-508.
    • (1999) Biotechnol. Adv. , vol.17 , pp. 489-508
    • Chan, J.W.1    Goodwin, P.H.2
  • 7
    • 0035929168 scopus 로고    scopus 로고
    • UDP-glucose dehydrogenase gene of Xanthomonas campestris is required for virulence
    • Chang K.W., Weng S.F., Tseng Y.H. UDP-glucose dehydrogenase gene of Xanthomonas campestris is required for virulence. Biochem. Biophys. Res. Commun. 2001, 287:550-555.
    • (2001) Biochem. Biophys. Res. Commun. , vol.287 , pp. 550-555
    • Chang, K.W.1    Weng, S.F.2    Tseng, Y.H.3
  • 8
    • 15944395524 scopus 로고    scopus 로고
    • Expression of heat-shock genes groESL in Xanthomonas campestris is upregulated by CLP in an indirect manner
    • Chang W.H., Lee M.C., Yang M.T., Tseng Y.H. Expression of heat-shock genes groESL in Xanthomonas campestris is upregulated by CLP in an indirect manner. FEMS Microbiol. Lett. 2005, 243:365-372.
    • (2005) FEMS Microbiol. Lett. , vol.243 , pp. 365-372
    • Chang, W.H.1    Lee, M.C.2    Yang, M.T.3    Tseng, Y.H.4
  • 9
    • 77949325119 scopus 로고    scopus 로고
    • The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris
    • Chin K.H., Lee Y.C., Tu Z.L., Chen C.H., Tseng Y.H., Yang J.M., Ryan R.P., McCarthy Y., et al. The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris. J. Mol. Biol. 2010, 396:646-662.
    • (2010) J. Mol. Biol. , vol.396 , pp. 646-662
    • Chin, K.H.1    Lee, Y.C.2    Tu, Z.L.3    Chen, C.H.4    Tseng, Y.H.5    Yang, J.M.6    Ryan, R.P.7    McCarthy, Y.8
  • 10
    • 0031557707 scopus 로고    scopus 로고
    • The Xanthomonas campestris gumD gene required for synthesis of xanthan gum is involved in normal pigmentation and virulence in causing black rot. Biochem
    • Chou F.L., Chou H.C., Lin Y.S., Yang B.Y., Lin N.T., Weng S.F., Tseng Y.H. The Xanthomonas campestris gumD gene required for synthesis of xanthan gum is involved in normal pigmentation and virulence in causing black rot. Biochem. Biophys. Res. Commun. 1997, 233:265-269.
    • (1997) Biophys. Res. Commun. , vol.233 , pp. 265-269
    • Chou, F.L.1    Chou, H.C.2    Lin, Y.S.3    Yang, B.Y.4    Lin, N.T.5    Weng, S.F.6    Tseng, Y.H.7
  • 12
    • 0025123205 scopus 로고
    • A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity
    • de Crecy-Lagard V., Glaser P., Lejeune P., Sismeiro O., Barber C.E., Daniels M.J., Danchin A. A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity. J. Bacteriol. 1990, 172:5877-5883.
    • (1990) J. Bacteriol. , vol.172 , pp. 5877-5883
    • de Crecy-Lagard, V.1    Glaser, P.2    Lejeune, P.3    Sismeiro, O.4    Barber, C.E.5    Daniels, M.J.6    Danchin, A.7
  • 13
    • 0026705921 scopus 로고
    • DNA binding specificity and sequence of Xanthomonas campestris catabolite gene activator protein-like protein
    • Dong Q., Ebright R.H. DNA binding specificity and sequence of Xanthomonas campestris catabolite gene activator protein-like protein. J. Bacteriol. 1992, 174:5457-5461.
    • (1992) J. Bacteriol. , vol.174 , pp. 5457-5461
    • Dong, Q.1    Ebright, R.H.2
  • 14
    • 0028028120 scopus 로고
    • Pathogenicity determinants and global regulation of pathogenicity of Xanthomonas campestris pv. campestris
    • Dow J.M., Daniels M.J. Pathogenicity determinants and global regulation of pathogenicity of Xanthomonas campestris pv. campestris. Curr. Top. Microbiol. Immunol. 1994, 192:29-41.
    • (1994) Curr. Top. Microbiol. Immunol. , vol.192 , pp. 29-41
    • Dow, J.M.1    Daniels, M.J.2
  • 15
    • 0025208213 scopus 로고
    • Construction of lactose-utilizing Xanthomonas campestris and production of xanthan gum from whey
    • Fu J.F., Tseng Y.H. Construction of lactose-utilizing Xanthomonas campestris and production of xanthan gum from whey. Appl. Environ. Microbiol. 1990, 56:919-923.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 919-923
    • Fu, J.F.1    Tseng, Y.H.2
  • 16
    • 38049177673 scopus 로고    scopus 로고
    • Regulation of the type II secretion structural gene xpsE in Xanthomonas campestris Pathovar campestris by the global transcription regulator Clp
    • Ge C., He C. Regulation of the type II secretion structural gene xpsE in Xanthomonas campestris Pathovar campestris by the global transcription regulator Clp. Curr. Microbiol. 2008, 56:122-127.
    • (2008) Curr. Microbiol. , vol.56 , pp. 122-127
    • Ge, C.1    He, C.2
  • 17
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan D. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 1983, 166:557-580.
    • (1983) J. Mol. Biol. , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 18
    • 34247372720 scopus 로고    scopus 로고
    • Xanthomonas campestris cell-cell communication involves a putative nucleotide receptor protein Clp and a hierarchical signalling network
    • He Y.W., Ng A.Y., Xu M., Lin K., Wang L.H., Dong Y.H., Zhang L.H. Xanthomonas campestris cell-cell communication involves a putative nucleotide receptor protein Clp and a hierarchical signalling network. Mol. Microbiol. 2007, 64:281-292.
    • (2007) Mol. Microbiol. , vol.64 , pp. 281-292
    • He, Y.W.1    Ng, A.Y.2    Xu, M.3    Lin, K.4    Wang, L.H.5    Dong, Y.H.6    Zhang, L.H.7
  • 19
    • 67650899296 scopus 로고    scopus 로고
    • Clp and RpfF upregulate transcription of pelA1 gene encoding the major pectate lyase in Xanthomonas campestris pv. campestris
    • Hsiao Y.M., Fang M.C., Sun P.F., Tseng Y.H. Clp and RpfF upregulate transcription of pelA1 gene encoding the major pectate lyase in Xanthomonas campestris pv. campestris. J. Agric. Food Chem. 2009, 57:6207-6215.
    • (2009) J. Agric. Food Chem. , vol.57 , pp. 6207-6215
    • Hsiao, Y.M.1    Fang, M.C.2    Sun, P.F.3    Tseng, Y.H.4
  • 20
    • 21244499413 scopus 로고    scopus 로고
    • Clp upregulates transcription of engA gene encoding a virulence factor in Xanthomonas campestris by direct binding to the upstream tandem Clp sites
    • Hsiao Y.M., Liao H.Y., Lee M.C., Yang T.C., Tseng Y.H. Clp upregulates transcription of engA gene encoding a virulence factor in Xanthomonas campestris by direct binding to the upstream tandem Clp sites. FEBS Lett. 2005, 579:3525-3533.
    • (2005) FEBS Lett. , vol.579 , pp. 3525-3533
    • Hsiao, Y.M.1    Liao, H.Y.2    Lee, M.C.3    Yang, T.C.4    Tseng, Y.H.5
  • 21
    • 0036306854 scopus 로고    scopus 로고
    • Transcription of Xanthomonas campestris prt1 gene encoding protease 1 increases during stationary phase and requires global transcription factor Clp
    • Hsiao Y.M., Tseng Y.H. Transcription of Xanthomonas campestris prt1 gene encoding protease 1 increases during stationary phase and requires global transcription factor Clp. Biochem. Biophys. Res. Commun. 2002, 295:43-49.
    • (2002) Biochem. Biophys. Res. Commun. , vol.295 , pp. 43-49
    • Hsiao, Y.M.1    Tseng, Y.H.2
  • 22
    • 42949160746 scopus 로고    scopus 로고
    • Regulation of the pehA gene encoding the major polygalacturonase of Xanthomonas campestris by Clp and RpfF
    • Hsiao Y.M., Zheng M.H., Hu R.M., Yang T.C., Tseng Y.H. Regulation of the pehA gene encoding the major polygalacturonase of Xanthomonas campestris by Clp and RpfF. Microbiology 2008, 154:705-713.
    • (2008) Microbiology , vol.154 , pp. 705-713
    • Hsiao, Y.M.1    Zheng, M.H.2    Hu, R.M.3    Yang, T.C.4    Tseng, Y.H.5
  • 23
    • 33845984522 scopus 로고    scopus 로고
    • Characterization of DNA binding specificity and analysis of binding sites of the Pseudomonas aeruginosa global regulator, Vfr, a homologue of the Escherichia coli cAMP receptor protein
    • Kanack K.J., Runyen-Janecky L.J., Ferrell E.P., Suh S.J., West S.E. Characterization of DNA binding specificity and analysis of binding sites of the Pseudomonas aeruginosa global regulator, Vfr, a homologue of the Escherichia coli cAMP receptor protein. Microbiology 2006, 152:3485-3496.
    • (2006) Microbiology , vol.152 , pp. 3485-3496
    • Kanack, K.J.1    Runyen-Janecky, L.J.2    Ferrell, E.P.3    Suh, S.J.4    West, S.E.5
  • 24
    • 0029946818 scopus 로고    scopus 로고
    • Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide
    • Katzen F., Becker A., Zorreguieta A., Puhler A., Ielpi L. Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide. J. Bacteriol. 1996, 178:4313-4318.
    • (1996) J. Bacteriol. , vol.178 , pp. 4313-4318
    • Katzen, F.1    Becker, A.2    Zorreguieta, A.3    Puhler, A.4    Ielpi, L.5
  • 25
    • 0031945268 scopus 로고    scopus 로고
    • Xanthomonas campestris pv. campestris gum mutants: effects on xanthan biosynthesis and plant virulence
    • Katzen F., Ferreiro D.U., Oddo C.G., Ielmini M.V., Becker A., Puhler A., Ielpi L. Xanthomonas campestris pv. campestris gum mutants: effects on xanthan biosynthesis and plant virulence. J. Bacteriol. 1998, 180:1607-1617.
    • (1998) J. Bacteriol. , vol.180 , pp. 1607-1617
    • Katzen, F.1    Ferreiro, D.U.2    Oddo, C.G.3    Ielmini, M.V.4    Becker, A.5    Puhler, A.6    Ielpi, L.7
  • 26
    • 0026490544 scopus 로고
    • Use of gel retardation to analyze protein-nucleic acid interactions
    • Lane D., Prentki P., Chandler M. Use of gel retardation to analyze protein-nucleic acid interactions. Microbiol. Rev. 1992, 56:509-528.
    • (1992) Microbiol. Rev. , vol.56 , pp. 509-528
    • Lane, D.1    Prentki, P.2    Chandler, M.3
  • 27
    • 70350436270 scopus 로고    scopus 로고
    • Cyclic di-GMP allosterically inhibits the CRP-like protein (Clp) of Xanthomonas axonopodis pv. citri
    • Leduc J.L., Roberts G.P. Cyclic di-GMP allosterically inhibits the CRP-like protein (Clp) of Xanthomonas axonopodis pv. citri. J. Bacteriol. 2009, 191:7121-7122.
    • (2009) J. Bacteriol. , vol.191 , pp. 7121-7122
    • Leduc, J.L.1    Roberts, G.P.2
  • 28
    • 77956285738 scopus 로고    scopus 로고
    • Characterization of pilSRBA1A2CD Cluster Required for Synthesis of Xanthomonas campestris pv. campestris Type IV pilus. PhD thesis, National Chung Hsing University
    • Lee, M.C., 2003. Characterization of pilSRBA1A2CD Cluster Required for Synthesis of Xanthomonas campestris pv. campestris Type IV pilus. PhD thesis, National Chung Hsing University.
    • (2003)
    • Lee, M.C.1
  • 29
    • 0042170415 scopus 로고    scopus 로고
    • Flagellin gene fliC of Xanthomonas campestris is upregulated by transcription factor Clp
    • Lee M.C., Weng S.F., Tseng Y.H. Flagellin gene fliC of Xanthomonas campestris is upregulated by transcription factor Clp. Biochem. Biophys. Res. Commun. 2003, 307:647-652.
    • (2003) Biochem. Biophys. Res. Commun. , vol.307 , pp. 647-652
    • Lee, M.C.1    Weng, S.F.2    Tseng, Y.H.3
  • 33
    • 0027134384 scopus 로고
    • Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis
    • Schweizer H.D. Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis. Biotechniques 1993, 15:831-834.
    • (1993) Biotechniques , vol.15 , pp. 831-834
    • Schweizer, H.D.1
  • 34
    • 0025185784 scopus 로고
    • Helical phase dependent action of CRP: effect of the distance between the CRP site and the -35 region on promoter activity
    • Ushida C., Aiba H. Helical phase dependent action of CRP: effect of the distance between the CRP site and the -35 region on promoter activity. Nucleic Acids Res. 1990, 18:6325-6330.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6325-6330
    • Ushida, C.1    Aiba, H.2
  • 35
    • 0025809486 scopus 로고
    • New pUC-derived cloning vectors with different selectable markers and DNA replication origins
    • Vieira J., Messing J. New pUC-derived cloning vectors with different selectable markers and DNA replication origins. Gene 1991, 100:189-194.
    • (1991) Gene , vol.100 , pp. 189-194
    • Vieira, J.1    Messing, J.2
  • 36
    • 39649106315 scopus 로고    scopus 로고
    • The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis
    • Vorholter F.J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., et al. The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. J. Biotechnol. 2008, 134:33-45.
    • (2008) J. Biotechnol. , vol.134 , pp. 33-45
    • Vorholter, F.J.1    Schneiker, S.2    Goesmann, A.3    Krause, L.4    Bekel, T.5    Kaiser, O.6    Linke, B.7    Patschkowski, T.8
  • 37
    • 0026541469 scopus 로고
    • Electrotransformation of Xanthomonas campestris by RF DNA of filamentous phage phi Lf
    • Wang T.W., Tseng Y.H. Electrotransformation of Xanthomonas campestris by RF DNA of filamentous phage phi Lf. Lett. Appl. Microbiol. 1990, 14:65-68.
    • (1990) Lett. Appl. Microbiol. , vol.14 , pp. 65-68
    • Wang, T.W.1    Tseng, Y.H.2
  • 38
    • 0028131681 scopus 로고
    • The vfr gene product, required for Pseudomonas aeruginosa exotoxin A and protease production, belongs to the cyclic AMP receptor protein family
    • West S.E., Sample A.K., Runyen-Janecky L.J. The vfr gene product, required for Pseudomonas aeruginosa exotoxin A and protease production, belongs to the cyclic AMP receptor protein family. J. Bacteriol. 1994, 176:7532-7542.
    • (1994) J. Bacteriol. , vol.176 , pp. 7532-7542
    • West, S.E.1    Sample, A.K.2    Runyen-Janecky, L.J.3
  • 39
    • 0002511709 scopus 로고
    • Production of exopolysaccharide and levels of protease and pectinase activity in pathogenic and non-pathogenic strains of Xanthomonas campestris pv. campestris
    • Yang B.Y., Tseng Y.H. Production of exopolysaccharide and levels of protease and pectinase activity in pathogenic and non-pathogenic strains of Xanthomonas campestris pv. campestris. Bot. Bull. Acad. Sinica. 1988, 29:93-99.
    • (1988) Bot. Bull. Acad. Sinica. , vol.29 , pp. 93-99
    • Yang, B.Y.1    Tseng, Y.H.2


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