Laceyella tengchongensis sp. nov., a thermophile isolated from soil of a volcano

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 9, 2010, Pages 2226-2230

  Zhang, Jing ^a,b   Tang, Shu Kun ^a,b   Zhang, Yu Qin ^c   Yu, Li Yan ^c   Klenk, Hans Peter ^d   Li, Wen Jun ^a,b  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b YUNNAN UNIVERSITY   (China)

^c INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; RIBOSOME RNA; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; RNA 16S;

ARCHAEBACTERIUM; BACTERIAL STRAIN; CHEMOTAXONOMY; GENE SEQUENCE; LACEYELLA TENGCHONGENSIS; NONHUMAN; PRIORITY JOURNAL; REVIEW; THERMOPHILE; VOLCANO; ANALYSIS; BACTERIA; CHINA; CLASSIFICATION; GENETICS; HEAT; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY;

BACTERIA; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HOT TEMPERATURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY; VOLCANIC ERUPTIONS;

LACEYELLA; LACEYELLA PUTIDA; LACEYELLA SACCHARI;

EID: 77956237361     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.011767-0     Document Type: Review

References (29)

1. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
7. Hatayama, K., Shoun, H., Ueda, Y. & Nakamura, A. (2005). Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost. Int J Syst Evol Microbiol 55, 2101-2104.
8. Huß, V. A. R., Festl, H. & Schleifer, K.-H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
9. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
10. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
11. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
12. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
13. Lacey, J. & Cross, T. (1989). Genus Thermoactinomyces Tsilinsky 1899, 501AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2574-2585. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
14. Lacey, J. & Vince, D. A. (1971). Endospore formation and germination in a new Thermoactinomyces species. In Spore Research, pp. 181-187. Edited by A. N. Barker, G. W. Gould & J. A. Wolf. London: Academic Press.
15. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
16. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
17. Matsuo, Y., Katsuta, A., Matsuda, S., Shizuri, Y., Yokota, A. & Kasai, H. (2006). Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. Int J Syst Evol Microbiol 56, 2837-2842.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
22. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
23. Stackebrandt, E. & Woese, C. R. (1981). Towards a phylogeny of the actinomycetes and related organisms. Curr Microbiol 5, 197-202.
24. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
25. Tsilinsky, P. (1899). On the thermophilic moulds. Ann Inst Pasteur 13, 500-505 (in French).
26. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
27. Williams, S. T., Goodfellow, M. & Alderson, G. (1989). Genus Streptomyces Waksman and Henrici 1943, 339AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2463-2468. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
28. Yoon, J.-H., Shin, Y. K. & Park, Y.-H. (2000). DNA-DNA relatedness among Thermoactinomyces species: Thermoactinomyces candidus as a synonym of Thermoactinomyces vulgaris and Thermoactinomyces thalpophilus as a synonym of Thermoactinomyces sacchari. Int J Syst Evol Microbiol 50, 1905-1908.
29. Yoon, J.-H., Kim, I.-G., Shin, Y.-K. & Park, Y.-H. (2005). Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 55, 395-400.