-
1
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert I., et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 2007, 446:572-576.
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
-
2
-
-
77953305748
-
A structural perspective of the where, how, what and why of nucleosome positioning
-
Arya G., Maitra A., Grigoryev S.A. A structural perspective of the where, how, what and why of nucleosome positioning. Journal of Biomolecular Structure and Dynamics; Current Perspectives on Nucleosome Positioning 2010, 27(6):803-820.
-
(2010)
Journal of Biomolecular Structure and Dynamics; Current Perspectives on Nucleosome Positioning
, vol.27
, Issue.6
, pp. 803-820
-
-
Arya, G.1
Maitra, A.2
Grigoryev, S.A.3
-
3
-
-
47649094814
-
Inferring natural selection on fine-scale chromatin organization in yeast
-
Babbitt G.A., Kim Y. Inferring natural selection on fine-scale chromatin organization in yeast. Mol. Biol. Evol. 2008, 25(8):1714-1727.
-
(2008)
Mol. Biol. Evol.
, vol.25
, Issue.8
, pp. 1714-1727
-
-
Babbitt, G.A.1
Kim, Y.2
-
5
-
-
33745737494
-
Myc-binding recognition in the human genome is determined by chromatin context
-
Guccione E., et al. Myc-binding recognition in the human genome is determined by chromatin context. Nat. Cell Biol. 2006, 8(7):764-770.
-
(2006)
Nat. Cell Biol.
, vol.8
, Issue.7
, pp. 764-770
-
-
Guccione, E.1
-
6
-
-
0038586484
-
The effects of selection against spurious transcription factor binding sites
-
Hahn M.W., Stajich J.E., Wray G.A. The effects of selection against spurious transcription factor binding sites. Mol. Biol. Evol. 2003, 20(6):901-906.
-
(2003)
Mol. Biol. Evol.
, vol.20
, Issue.6
, pp. 901-906
-
-
Hahn, M.W.1
Stajich, J.E.2
Wray, G.A.3
-
7
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
He H.H., et al. Nucleosome dynamics define transcriptional enhancers. Nat. Genet. 2010, 42(4):343-347.
-
(2010)
Nat. Genet.
, vol.42
, Issue.4
, pp. 343-347
-
-
He, H.H.1
-
8
-
-
0033057479
-
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure
-
Ioshikhes I., Trifonov E.N., Zhang M.Q. Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure. Proc. Natl Acad. Sci. USA 1999, 96(6):2891-2895.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, Issue.6
, pp. 2891-2895
-
-
Ioshikhes, I.1
Trifonov, E.N.2
Zhang, M.Q.3
-
9
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
Ioshikhes I.P., Albert I., Zanton S.J., Pugh B.F. Nucleosome positions predicted through comparative genomics. Nat. Genet. 2006, 38:1210-1215.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1210-1215
-
-
Ioshikhes, I.P.1
Albert, I.2
Zanton, S.J.3
Pugh, B.F.4
-
10
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N., et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 2009, 458:362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
-
11
-
-
0026600016
-
Statistical analyses of counts and distributions of restriction sites in DNA sequences
-
Karlin S., Burge C., Cambell A.M. Statistical analyses of counts and distributions of restriction sites in DNA sequences. Nucleic Acids Res. 1992, 20(6):1363-1370.
-
(1992)
Nucleic Acids Res.
, vol.20
, Issue.6
, pp. 1363-1370
-
-
Karlin, S.1
Burge, C.2
Cambell, A.M.3
-
12
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis M., Patterson N., Endrizzi M., Birren B., Lander E.S. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 2003, 423:241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
13
-
-
43449096915
-
Chromatin decouples promoter threshold from dynamic range
-
Lam F.H., Steger D.J., O'Shea E.K. Chromatin decouples promoter threshold from dynamic range. Nature 2008, 453:246-251.
-
(2008)
Nature
, vol.453
, pp. 246-251
-
-
Lam, F.H.1
Steger, D.J.2
O'Shea, E.K.3
-
14
-
-
38349144394
-
Understanding the molecular machinery of genetics through #D structures
-
Laskowski R.A., Thornton J.M. Understanding the molecular machinery of genetics through #D structures. Nat. Rev. Genet. 2008, 9:141-151.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 141-151
-
-
Laskowski, R.A.1
Thornton, J.M.2
-
15
-
-
34748826166
-
A high resolution atlas of nucleosome occupancy in yeast
-
Lee W., et al. A high resolution atlas of nucleosome occupancy in yeast. Nat. Genet. 2007, 39(10):1235-1244.
-
(2007)
Nat. Genet.
, vol.39
, Issue.10
, pp. 1235-1244
-
-
Lee, W.1
-
16
-
-
33947309924
-
Probasin promoter assembles into a strongly positioned nucleosome that permits androgen receptor binding
-
Maffey A.H., et al. Probasin promoter assembles into a strongly positioned nucleosome that permits androgen receptor binding. Mol. Cell. Endocrinol. 2007, 268:10-19.
-
(2007)
Mol. Cell. Endocrinol.
, vol.268
, pp. 10-19
-
-
Maffey, A.H.1
-
17
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
Mavrich T.N., et al. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res. 2008, 18:1073-1083.
-
(2008)
Genome Res.
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
-
18
-
-
36949023082
-
A nucleosome-guided map of transcriptionfactor binding sites in yeast
-
e215
-
Narlikar L., Gordan R., Hartemink A.J. A nucleosome-guided map of transcriptionfactor binding sites in yeast. PLoS Comput. Biol. 2007, 3(11):2199-2208. e215.
-
(2007)
PLoS Comput. Biol.
, vol.3
, Issue.11
, pp. 2199-2208
-
-
Narlikar, L.1
Gordan, R.2
Hartemink, A.J.3
-
19
-
-
50049127216
-
Chromatin context dominates estrogen regulation of pS2 gene expression
-
Oduro A.K., Fritsch M.K., Murdoch F.E. Chromatin context dominates estrogen regulation of pS2 gene expression. Exp. Cell Res. 2008, 314:2796-2810.
-
(2008)
Exp. Cell Res.
, vol.314
, pp. 2796-2810
-
-
Oduro, A.K.1
Fritsch, M.K.2
Murdoch, F.E.3
-
20
-
-
0242362735
-
Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster
-
Ringrose L., Rehmsmeier M., Dura J.M., Paro R. Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster. Dev. Cell 2003, 5:759-771.
-
(2003)
Dev. Cell
, vol.5
, pp. 759-771
-
-
Ringrose, L.1
Rehmsmeier, M.2
Dura, J.M.3
Paro, R.4
-
21
-
-
70350686719
-
The role of DNA shape in protein-DNA interaction
-
Rohs R., West S.M., Sosinsky A., Liu P., Mann R.S., Honig B. The role of DNA shape in protein-DNA interaction. Nature 2009, 461:1248-1254.
-
(2009)
Nature
, vol.461
, pp. 1248-1254
-
-
Rohs, R.1
West, S.M.2
Sosinsky, A.3
Liu, P.4
Mann, R.S.5
Honig, B.6
-
22
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E., et al. A genomic code for nucleosome positioning. Nature 2006, 442:772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
-
23
-
-
0035477896
-
Core promoters: active contributors to combinatorial gene regulation
-
Smale S.T. Core promoters: active contributors to combinatorial gene regulation. Genes Dev. 2001, 15:2503-2508.
-
(2001)
Genes Dev.
, vol.15
, pp. 2503-2508
-
-
Smale, S.T.1
-
24
-
-
33644873683
-
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
-
D447-database issue
-
Teixeira M.C., et al. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 2006, 34. D447-database issue.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Teixeira, M.C.1
-
25
-
-
38349018723
-
On the relation between promoter divergence and gene expression evolution
-
Tirosh I., Weinberger A., Bezalel D., Kaganovich M., Barkai N. On the relation between promoter divergence and gene expression evolution. Mol. Syst. Biol. 2008, 4:159.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 159
-
-
Tirosh, I.1
Weinberger, A.2
Bezalel, D.3
Kaganovich, M.4
Barkai, N.5
-
26
-
-
34447644439
-
A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning
-
Tolstorukov M.Y., Colasanti A.V., McCandlish D.M., Olson W.K., Zhurkin V.B. A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning. J. Mol. Biol. 2007, 371:725-738.
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 725-738
-
-
Tolstorukov, M.Y.1
Colasanti, A.V.2
McCandlish, D.M.3
Olson, W.K.4
Zhurkin, V.B.5
-
27
-
-
45449093785
-
NuScore: a web-interface for nucleosome positioning predictions
-
Tolstorukov M.Y., Choudhary V., Olson W.K., Zhurkin V.B., Park P.J. nuScore: a web-interface for nucleosome positioning predictions. Bioinformatics 2008, 24(12):1456-1458.
-
(2008)
Bioinformatics
, vol.24
, Issue.12
, pp. 1456-1458
-
-
Tolstorukov, M.Y.1
Choudhary, V.2
Olson, W.K.3
Zhurkin, V.B.4
Park, P.J.5
-
28
-
-
0042697343
-
The evolution of transcriptional regulation in eukaryotes
-
Wray G.A., et al. The evolution of transcriptional regulation in eukaryotes. Mol. Biol. Evol. 2003, 20:1377-1419.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1377-1419
-
-
Wray, G.A.1
|