Identification and biochemical characterization of a unique Mn 2+-dependent UMP kinase from Helicobacter pylori

Archives of Microbiology

Volumn 192, Issue 9, 2010, Pages 739-746

  Lee, Mon Juan ^a,b   Chien Liang, Liu ^a   Tsai, Ju Ying ^a   Sue, Wae Ting ^a   Hsia, Wan Shun ^a   Huang, Haimei ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b CHANG JUNG CHRISTIAN UNIVERSITY   (Taiwan)

Author keywords

Helicobacter pylori; Manganese preference; UMP kinase; Uridine monophosphate

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL ENZYME; GUANOSINE TRIPHOSPHATE; MAGNESIUM ION; MANGANESE; NUCLEOSIDE MONOPHOSPHATE KINASE; UNCLASSIFIED DRUG; URIDINE PHOSPHATE KINASE; URIDINE TRIPHOSPHATE; BACTERIAL PROTEIN; MAGNESIUM; URIDINE MONOPHOSPHATE KINASE;

ARTICLE; BINDING AFFINITY; CONCENTRATION (PARAMETERS); CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME BINDING; ENZYME INHIBITION; ENZYME MECHANISM; HELICOBACTER PYLORI; MICHAELIS MENTEN KINETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PRIORITY JOURNAL; REGULATORY MECHANISM; SEQUENCE HOMOLOGY; SOLUBILITY; SPECIES COMPARISON; AMINO ACID SEQUENCE; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; GUANOSINE TRIPHOSPHATE; HELICOBACTER PYLORI; MAGNESIUM; MANGANESE; MOLECULAR SEQUENCE DATA; NUCLEOSIDE-PHOSPHATE KINASE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); HELICOBACTER PYLORI;

EID: 77956227855     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-010-0600-x     Document Type: Article

References (25)

1. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 10.1016/0003-2697(76)90527-3 1:CAS:528: DyaE28XksVehtrY%3D 942051
2. PS Brignola, et al. 2002 Comparison of the biochemical and kinetic properties of the type 1 receptor tyrosine kinase intracellular domains. Demonstration of differential sensitivity to kinase inhibitors J Biol Chem 277 1576 1585 10.1074/jbc.M105907200 1:CAS:528:DC%2BD38XnvFyisQ%3D%3D 11696537
3. P Briozzo, et al. 2005 Structure of Escherichia coli UMP kinase differs from that of other nucleoside monophosphate kinases and sheds new light on enzyme regulation J Biol Chem 280 25533 25540 10.1074/jbc.M501849200 1:CAS:528:DC%2BD2MXlslylurk%3D 15857829
4. TC Chao H Huang JY Tsai CY Huang YJ Sun 2006 Kinetic and structural properties of inorganic pyrophosphatase from the pathogenic bacterium Helicobacter pylori Proteins 65 670 680 10.1002/prot.21093 1:CAS:528: DC%2BD28XhtFWqt7bK 16988955
5. C Evrin, et al. 2007 Regulatory mechanisms differ in UMP kinases from gram-negative and gram-positive bacteria J Biol Chem 282 7242 7253 10.1074/jbc.M606963200 1:CAS:528:DC%2BD2sXitlSrsbo%3D 17210578
6. F Fassy, et al. 2004 UMP kinase from Streptococcus pneumoniae: evidence for co-operative ATP binding and allosteric regulation Biochem J 384 619 627 10.1042/BJ20040440 1:CAS:528:DC%2BD2cXhtVGku7zP 15324307
7. C Gagyi, et al. 2003 UMP kinase from the Gram-positive bacterium Bacillus subtilis is strongly dependent on GTP for optimal activity Eur J Biochem 270 3196 3204 10.1046/j.1432-1033.2003.03702.x 1:CAS:528:DC%2BD3sXmt1Sktrc%3D 12869195
8. RL Gamble ML Coonfield GE Schaller 1998 Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis Proc Natl Acad Sci USA 95 7825 7829 10.1073/pnas.95.13.7825 1:CAS:528:DyaK1cXktFCgsbo%3D 9636235
9. PM Guy KL Carraway III RA Cerione 1992 Biochemical comparisons of the normal and oncogenic forms of insect cell-expressed neu tyrosine kinases J Biol Chem 267 13851 13856 1:CAS:528:DyaK38XmtVOrtbs%3D 1352772
10. JY Jeong, et al. 2000 Sequential inactivation of rdxA (HP0954) and frxA (HP0642) nitroreductase genes causes moderate and high-level metronidazole resistance in Helicobacter pylori J Bacteriol 182 5082 5090 10.1128/JB.182.18. 5082-5090.2000 1:CAS:528:DC%2BD3cXmsVOqtbk%3D 10960091
11. A Jong Y Yeh JJ Ma 1993 Characteristics, substrate analysis, and intracellular location of Saccharomyces cerevisiae UMP kinase Arch Biochem Biophys 304 197 204 10.1006/abbi.1993.1339 1:STN:280:DyaK3szht1SjsQ%3D%3D 8391780
12. G Labesse, et al. 2002 Comparative modelling and immunochemical reactivity of Escherichia coli UMP kinase Biochem Biophys Res Commun 294 173 179 10.1016/S0006-291X(02)00450-3 1:CAS:528:DC%2BD38XkvVahur0%3D 12054759
13. 2+)-ATP-oxalate complex of the rabbit muscle pyruvate kinase at 2.1 A resolution: ATP binding over a barrel Biochemistry 37 6247 6255 10.1021/bi980243s 1:CAS:528:DyaK1cXis12ltr8%3D 9572839
14. MJ Lee CY Huang YJ Sun H Huang 2005 Cloning and characterization of spermidine synthase and its implication in polyamine biosynthesis in Helicobacter pylori strain 26695 Protein Expr Purif 43 140 148 10.1016/j.pep.2005.04.017 16009566
15. MJ Lee CH Liu SY Wang CT Huang H Huang 2006 Characterization of the Soj/Spo0 J chromosome segregation proteins and identification of putative parS sequences in Helicobacter pylori Biochem Biophys Res Commun 342 744 750 10.1016/j.bbrc.2006.01.173 1:CAS:528:DC%2BD28XitVKjsbg%3D 16494844
16. P Meyer C Evrin P Briozzo N Joly O Barzu AM Gilles 2008 Structural and functional characterization of Escherichia coli UMP kinase in complex with its allosteric regulator GTP J Biol Chem 283 36011 36018 10.1074/jbc.M802614200 1:CAS:528:DC%2BD1cXhsVyls77N 18945668
17. C Pasti S Gallois-Montbrun H Munier-Lehmann M Veron AM Gilles D Deville-Bonne 2003 Reaction of human UMP-CMP kinase with natural and analog substrates Eur J Biochem 270 1784 1790 10.1046/j.1432-1033.2003.03537.x 1:CAS:528:DC%2BD3sXjtl2ju7o%3D 12694191
18. K Schinkmann J Blenis 1997 Cloning and characterization of a human STE20-like protein kinase with unusual cofactor requirements J Biol Chem 272 28695 28703 10.1074/jbc.272.45.28695 1:CAS:528:DyaK2sXntlCqtL4%3D 9353338
19. P Schuck 2000 Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling Biophys J 78 1606 1619 10.1016/S0006-3495(00)76713-0 1:CAS:528:DC%2BD3cXhsF2jtbg%3D 10692345
20. L Serina, et al. 1995 Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP Biochemistry 34 5066 5074 10.1021/bi00015a018 1:CAS:528:DyaK2MXkvFGhs7w%3D 7711027
21. L Serina, et al. 1996 Structural properties of UMP-kinase from Escherichia coli: modulation of protein solubility by pH and UTP Biochemistry 35 7003 7011 10.1021/bi960062v 1:CAS:528:DyaK28XivFSls74%3D 8679525
22. JY Su E Erikson JL Maller 1996 Cloning and characterization of a novel serine/threonine protein kinase expressed in early Xenopus embryos J Biol Chem 271 14430 14437 10.1074/jbc.271.24.14430 1:CAS:528:DyaK28Xjs1Oiu74%3D 8662877
23. K Yamanaka T Ogura H Niki S Hiraga 1992 Identification and characterization of the smbA gene, a suppressor of the mukB null mutant of Escherichia coli J Bacteriol 174 7517 7526 1:CAS:528:DyaK3sXltFShsrs%3D 1447125
24. H Zhang K Ishige A Kornberg 2002 A polyphosphate kinase (PPK2) widely conserved in bacteria Proc Natl Acad Sci USA 99 16678 16683 10.1073/pnas. 262655199 1:CAS:528:DC%2BD3sXhvV2jtQ%3D%3D 12486232
25. L Zhou R Thornburg 1998 Site-specific mutations of conserved residues in the phosphate-binding loop of the Arabidopsis UMP/CMP kinase alter ATP and UMP binding Arch Biochem Biophys 358 297 302 10.1006/abbi.1998.0874 1:CAS:528:DyaK1cXmslyks7w%3D 9784243