Molecular cloning and characterization of the UL10 gene from Duck enteritis virus

2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010

Volumn , Issue , 2010, Pages

  Zhou, Tao ^a   Cheng, Anchun ^a   Wang, Mingshu ^a   Zhu, Dekang ^a,b   Chen, Xiaoyue ^a,b   Cheng, An Chun ^b   Wang, Ming Shu ^b   Jia, Renyong ^b   Luo, Qihui ^b   Cui, Hengmin ^b   Zhou, Yi ^b   Wang, Yin ^b   Xu, Zhiwen ^b   Chen, Zhengli ^b   Wang, Xiaoyu ^b  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

^b Key Laboratory of Animal Disease and Human Health of Sichuan Province   (China)

Author keywords

Characterization; Codon usage bias; Duck enteritis virus (DEV); Expression; UL10 gene

Indexed keywords

CODON BIAS; CODON USAGE BIAS; CORRELATION ANALYSIS; DUCK ENTERITIS VIRUS (DEV); EVOLUTIONARY RELATIONSHIPS; EXPRESSION; FUSION PROTEINS; GENBANK; MOLECULAR CLONING; MULTIPLE SEQUENCE ALIGNMENTS; NUCLEOTIDE SEQUENCES; PHYLOGENETIC ANALYSIS; PROKARYOTIC EXPRESSION; UL10 GENE;

AMINO ACIDS; BIOINFORMATICS; CLONING; ENCODING (SYMBOLS); ESCHERICHIA COLI; GENE ENCODING; NUCLEOTIDES; ORGANIC ACIDS; VIRUSES;

GENE EXPRESSION;

EID: 77956146123     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2010.5515899     Document Type: Conference Paper

References (51)

1. T.S. Sandhu, S.A. Shawky, "Duck virus enteritis", Diseases of poultry, Wiley, New York, pp 354-363, 2003.
2. S. Davison, K. A .Converse, A.N. Hamir, R.J. Eckroade, "Duck viral enteritis in domestic muscovy ducks in Pennsylvania", Avian Dis, American Association Of Avian Pathologists, United States, vol.37,pp. 1142-1146, January 1993.
3. R.J. Montali, M. Bush, G.A. Greenwell, "An epornitic of duck viral enteritis in a zoological park", J Am Vet Med Assoc, American Veterinary Medical Association, United States, vol.169, pp.954-958, November 1976.
4. S.J. Proctor, "Pathogenesis of duck plague in the bursa of Fabricius", thymus, and spleen, Am J Vet Res, American Veterinary Medical Association, United States, vol. 37 ,pp.427-431, April 1976.
5. R. Gardner, J. Wilkerson, J.C. Johnson, "Molecular characterization of the DNA of Anatid herpesvirus 1", Intervirology, Karger, Switzerland, vol.36, pp. 99-112, June 1993.
6. E.F. Kaleta, "Herpesviruses of birds - a review", Avian Pathol, Taylor and Francis, England, vol.19, pp. 193-211.April 1990.
7. S. Shawky, K.A. Schat, "Latency sites and reactivation of duck enteritis virus", Avian Dis, American Association Of Avian Pathologists, United States, vol.46, pp.308-313, June 2001.
8. C. Fauquet.M. Mayo, J. Maniloff, "Virus taxonomy: Eighth report of the international committee on taxonomy of viruses", elsevier academic press, London, 2005.
9. P.G. Spear, R. Longnecker, "Herpesvirus entry: an update", J Virol, American Society For Microbiology, United States, vol. 77, pp.10179-10185. October 2003.
10. T.C. Mettenleiter, "Budding events in herpesvirus morphogenesis", Virus Res, Elsevier Science, Netherlands, vol.106, pp. 167-180, October 004.
11. T.C. Mettenleiter, "Herpesvirus assembly and egress", J Virol, American Society For Microbiology , United States, vol.76, pp.1537-1547, February 2002.
12. D.J. McGeoch, M.A. Dalrymple, A.J. Davison, A. Dolan, M.C. Frame, D. McNab, L.J. Perry, J.E. Scott, P. Taylor, "The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1", J Gen Virol, Society For General Microbiology, England, vol.69 ,pp.1531-1574, April 1988.
13. J.D. Baines, B. Roizman, "The UL10 gene of herpes simplex virus 1 encodes a novel viral glycoprotein, gM, which is present in the virion and in the plasma membrane of infected cells", J Virol, American Society For Microbiology, United States, vol.67, pp.1441-1452, March 1993.
14. CA. MacLean, L.M. Robertson, F.E. Jamieson, "Characterization of the UL10 gene product of herpes simplex virus type 1 and investigation of its role in vivo", J Gen Virol, Society For General Microbiology, England, vol.74, pp.975-983, January 1993.
15. J.D. Baines, B. Roizman, "The open reading frames UL3, UL4, UL10, and UL16 are dispensable for the replication of herpes simplex virus 1 in cell culture", J Virol, American Society For Microbiology, United States, vol.65, pp.938-944, February 1991.
16. J.M. Dijkstra, N. Visser, T.C. Mettenleiter, B.G. Klupp, "Identification and characterization of Pseudorabies virus glycoprotein gM as a nonessential virion component", J Virol, American Society For Microbiology, United States, vol.70, pp.5684-5688, August 1996.
17. N. Osterrieder, A. Neubauer, C. Brandmüller, O.R. Kaaden, D. J. O'caliaghan, "The equine herpesvirus 1 IR6 protein influences virus growth at elevated temperature and is a major determinant of virulence", Virology, Academic Press, United States,vol.226, pp.243-251, December 1996.
18. C. Ziegler, F.T. Just, A. Lischewski, K. Elbers, A. Neubauer, "A glycoprotein M-deleted equid herpesvirus 4 is severely impaired in virus egress and cell-to-cell spread", J Gen Virol, vol.86, pp. 11-21, 2005.
19. R. Lehner, H. Meyer, M. Mach, "Identification and characterization of a human cytomegalovirus gene coding for a membrane protein that is conserved among human herpesviruses", J Virol, American Society For Microbiology, United States, vol.63, pp.3792-3800, September 1989.
20. A. Pilling, A.J. Davison, A.R. Elizabeth, Telford, D.M. Meredith, "The equine herpesvirus type 1 glycoprotein homologous to herpes simplex virus type 1 glycoprotein M is a major constituent of the virus particle", J Gen Virol, Society For General Microbiology, England, vol.75, pp.439-442, October 1993.
21. S.X. Wu, X.P. Zhu, G.J. Letchworth, "Bovine herpesvirus 1 glycoprotein M forms a disulfide-linked heterodimer with the U(L)49.5 protein", J Virol, American Society For Microbiology, United States,vol.72, pp.3029-3036, April 1998.
22. C.M. Lake, LM. Hutt-Fletcher, "Epstein-Barr virus that lacks glycoprotein gN is impaired in assembly and infection", J Virol, American Society For Microbiology, United States, vol.74, pp. 11162-11172, December 2000.
23. A. Jons, J.M. Dijkstra, T.C. Mettenleiter, "Glycoproteins M and N of Pseudorabies virus form a disulfide-linked complex", J Virol, American Society For Microbiology, United States, vol.72, pp.550-557, January 1998.
24. X. Liang, B. Chow, C. Raggo, L. Babiuk, "Bovine herpesvirus 1 UL49.5 homolog gene encodes a novel viral envelope protein that forms a disulfide-linked complex with a second virion structural protein", J Virol, American Society For Microbiology, United States, vol.70, pp.1448-1454, March 1996.
25. M. Mach, B. Kropff, M. Kryzaniak, W. Britt, "Complex formation by glycoproteins M and N of human cytomegalovirus: structural and functional aspects", J Virol, American Society For Microbiology, United States, vol.79, pp.2160-2170, February 2005.
26. A.C. Cheng, M.S. Wang, M. Wen, W.G. Zhou, Y.F. Guo, R.Y. Jia, C. Xu, G.P. Yuan, Y.C. Liu, "Construction of duck enteritis virus gene libraries and discovery, cloning and identification of viral nucleocapsid protein gene",High Technol.Lett,ISTIC,Beijing,vol.16, pp.948-953, 2006.
27. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, D.J. Lipman, "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res, Oxford University Press, England, vol.25, pp.3389-3402, June 1997.
28. J.D. Bendtsen, H. Nielse, G. von Heijne, S. Brunak, "Improved prediction of signal peptides: SignalP 3.0", J MoI Biol, Academic Press, England , vol.340, pp. 783-795, July 2004
29. D.G. Higgins, A.J. Bleasby, R. Fuchs, "CLUSTAL V: improved software for multiple sequence alignment", Comput Appl Biosci, Oxford University Press, England, vol.8, PP.189-191, August 1991.
30. D.G. Higgins, "CLUSTAL V: multiple alignment of DNA and protein sequences", Methods Mol Biol, Humana Press , United States vol.25, pp.307-318, 1994.
31. R.D. Page, "TreeView: an application to display phylogenetic trees on personal computers", Comput Appl Biosci, Oxford University Press, England, vol.12, pp.357-358, 1996.
32. H. Sakai, T. Washio, R. Saito, A. Shinagawa, M. Itoh, K. Shibata, et al. "Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes", Gene, Elsevier Science, Amsterdam, vol. 276, pp. 101-105, October 2001.
33. F. Wright, "The 'effective number of codons' used in a gene", Gene, Elsevier/North-Holland, Netherlands, vol.87, pp.23-29, March 1990.
34. P.M. Sharp, W.H. Li, "The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications", Nucleic Acids Res, Oxford University Press, England, vol. 15, pp. 1281-1295, December 1986.
35. H. Lu, W. M. Zhao, Y. Zheng, H. Wang, M. Qi and X. P. Yu, "Analysis of synonymous codon usage bias in Chlamydia", Acta Biochim Biophys Sin, Oxford University Press, Oxford, vol. 37, pp. 1-10, January; 2005
36. W. J. Blake, M. Kaern, C. R. Cantor, and J. J. Collins, "Noise in eukaryotic gene expression." Nature, MacMillan.Ltd, London, vol. 422, pp. 633-637, April 2003.
37. J. M. Comeron, and M. Aguade, "An evaluation of measures of synonymous codon usage bias", J Mol Evol, Springer, Berlin , vol. 47, pp. 268-274, September; 1998.
38. J. A. Novembre, "Accounting for background nucleotide composition when measuring codon usage bias", Mol Biol Evol, Oxford University Press, Oxford, vol. 19, pp. 1390-1394, July; 2002.
39. J. N. Weinstein, T. G. Myers, P. M. O'Connor, S. H. Friend, A. J. Fornace, K. W. Kohn, et al. "An information-intensive approach to the molecular pharmacology of cancer", Science, Highwire, Stanford, vol. 275, pp. 343-349, January 1997.
40. P.Y. Chou, G.D. Fasman, "Prediction of the secondary structure of proteins from their amino acid sequence", Adv Enzymol Relat Areas Mol Biol, Wiley Interscience, United States, vol.47, pp. 45-148, 1978.
41. J. Kyte, R.F. Doolittle, "A simple method for displaying the hydropathic character of a protein", J Mol Biol, Academic Press, England, vol.157, pp. 105-132, May 1982.
42. R. Kornfeld, S. Kornfeld, "Assembly of asparagine-linked oligosaccharides", Annu Rev Biochem, Annual Reviews, United States, vol.54, pp.631-664, July 1985.
43. D.J. McGeoch, "On the predictive recognition of signal peptide sequences", Virus Res, Elsevier Science, Netherlands, vol.3, pp.271-286, October 1985.
44. N. Sueoka, "Directional mutation pressure, selective constraints, and genetic equilibria", J.Mol.Evol , Springer, Berlin, vol. 34, pp. 95-114, November 1992.
45. X.F. Wan, D. Xu, A. Kleinhofs, J. Zhou, "Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes", BMC Evol Biol, BioMed Central, England, vol.4, pp. 19, June 2004.
46. H.Li, L.F.Luo,"The relation between codon usage, base correlation and gene expression level in Escherichia coli and yeast", J.Theor. Biol, Elsevier, Amsterdam ,vol. 181,pp.111-124, July 1996.
47. J.T. Herbeck, D.P. Wall, J.J. Wernegreen, "Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia", Microbiology, Kluwer Academic/Plenum Publishers, United States, vol.149, pp. 2585-2596, 2003.
48. I.Henry, P.M. Sharp,"Predicting Gene Expression Level from Codon Usage Bias", Mol. Biol. Evol.Society for Molecular Biology and Evolution, Oxford University Press, Oxford, vol.24, pp. 10-12, October 2007.
49. D.J. McGeoch, S. Cook, "Molecular phylogeny of the alphaherpesvirinae subfamily and a proposed evolutionary timescale", J Mol Biol, Academic Press , England ,vol.238, pp. 9-22, 1994.
50. CM. Crump, B. Bruun, S. Bell, E. L. Pomeranz, T. Minson, H.M. Browne, "Alphaherpesvirus glycoprotein M causes the relocalization of plasma membrane proteins", J Gen Virol, Society For General Microbiology, England, vol.85, pp.3517-3527, August 2004.
51. Y. Yamagishi, T. Sadaoka, H. Yoshii, P. Somboonthum, T. Imazawa, K. Nagaike, K. Ozono, K. Yamanishi, Y. Mori, "Varicella-zoster virus glycoprotein M homolog is glycosylated, is expressed on the viral envelope, and functions in virus cell-to-cell spread", J Virol, American Society For Microbiology, United States, vol.82, pp.795-804, January 2008.