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Volumn 181, Issue 2, 1996, Pages 111-124

The relation between codon usage, base correlation and gene expression level in Escherichia coli and yeast

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; CODON USAGE; DNA BASE COMPOSITION; ESCHERICHIA COLI; FUNGAL GENETICS; GENE EXPRESSION; NONHUMAN; PRIORITY JOURNAL; REGRESSION ANALYSIS; YEAST;

EID: 0030596612     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1996.0119     Document Type: Article
Times cited : (15)

References (24)
  • 1
    • 0026459383 scopus 로고
    • Protein folding within the cell is influenced by controlled rates of polypeptide elongation
    • CROMBIE, T., SWAFFIELD, J. C. & BROWN, A. J. P. (1992). Protein folding within the cell is influenced by controlled rates of polypeptide elongation. J. Mol. Biol. 228, 7-12.
    • (1992) J. Mol. Biol. , vol.228 , pp. 7-12
    • Crombie, T.1    Swaffield, J.C.2    Brown, A.J.P.3
  • 2
    • 0020491327 scopus 로고
    • Codon usage in bacteria: Correlation with gene expressivity
    • GUAY, M. & GAUTIER, C. (1982). Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Res. 10, 7055-7075.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 7055-7075
    • Guay, M.1    Gautier, C.2
  • 3
    • 0022589865 scopus 로고
    • Codon usage and gene expression
    • HOLM, L. (1986). Codon usage and gene expression. Nucleic Acids Res. 14, 3075-3087.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 3075-3087
    • Holm, L.1
  • 4
    • 0000263398 scopus 로고
    • Codon pair utilization bias in bacteria, yeast and mammals
    • (Hatfield, D. L. et al., eds), Boca Raton: CRC Press
    • HATFIELD, G. W. & GUTMAN, G. A. (1992). Codon pair utilization bias in bacteria, yeast and mammals. In: tRNA in Protein Synthesis, (Hatfield, D. L. et al., eds), Boca Raton: CRC Press.
    • (1992) tRNA in Protein Synthesis
    • Hatfield, G.W.1    Gutman, G.A.2
  • 5
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • IKEMURA, T. (1981a). Correlation between the abundance of Escherichia coli transfer RNAs and the Occurrence of the respective codons in its protein genes. J. Mol. Biol. 146, 1-21.
    • (1981) J. Mol. Biol. , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 6
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for synonymous codon choice that is optimal for the E. coli translational system
    • IKEMURA, T. (1981b). Correlation between the abundance of Escherichia coli transfer RNAs and the Occurrence of the respective codons in its protein genes: A proposal for Synonymous codon choice that is optimal for the E. coli Translational System. J. Mol. Biol. 151, 389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 7
    • 0008585246 scopus 로고
    • Correlation between codon usage and tRNA content
    • Hatfield, D. L. et al., eds, Boca Raton: CRC Press
    • IKEMURA, T. (1992). Correlation between codon usage and tRNA content. In: tRNA in Protein Synthesis. Hatfield, D. L. et al., eds), Boca Raton: CRC Press.
    • (1992) tRNA in Protein Synthesis
    • Ikemura, T.1
  • 8
    • 0011847107 scopus 로고
    • The relation between codon usage and gene expression level studied for three species with information entropy method
    • LI, H. & LUO, L. F. (1995a). The relation between codon usage and gene expression level studied for three species with information entropy method. Acta Scientiarum Naturalium Universitatis Intramongolicae. 26, 280-289.
    • (1995) Acta Scientiarum Naturalium Universitatis Intramongolicae , vol.26 , pp. 280-289
    • Li, H.1    Luo, L.F.2
  • 9
    • 0011839566 scopus 로고
    • A primary study of gene expression level and its relation to synonymous codon usage
    • LI, H. & LUO, L. F. (1995b). A primary study of gene expression level and its relation to synonymous codon usage. Acta Biolphysica sinica 11, 237-244.
    • (1995) Acta Biolphysica Sinica , vol.11 , pp. 237-244
    • Li, H.1    Luo, L.F.2
  • 10
    • 0025932187 scopus 로고
    • The statistical correlation of nucleotides in protein-coding DNA sequences
    • LUO, L. F. & LI, H. (1991). The statistical correlation of nucleotides in protein-coding DNA sequences. Bulletin of Mathematical Biology. 53, 345-351.
    • (1991) Bulletin of Mathematical Biology , vol.53 , pp. 345-351
    • Luo, L.F.1    Li, H.2
  • 11
    • 0029329297 scopus 로고
    • Fuzzy classification of nucleotide sequences and bacterial evolution
    • LUO, L. F., JI, F. M. & LI, H. (1995). Fuzzy classification of nucleotide sequences and bacterial evolution. Bulletin of Mathematical Biology. 57, 527-537.
    • (1995) Bulletin of Mathematical Biology , vol.57 , pp. 527-537
    • Luo, L.F.1    Ji, F.M.2    Li, H.3
  • 13
    • 85030269828 scopus 로고
    • Intelli-Genetics Inc. California
    • GenBank Release 67.0 (1991). Intelli-Genetics Inc. California.
    • (1991) GenBank Release 67.0
  • 14
    • 0023046211 scopus 로고
    • Codon usage in regulatory genes in Escherichia coli does not reflect selection for "rare" codons
    • SHARP, P. M. & LI, W. H. (1986a). Codon usage in regulatory genes in Escherichia coli does not reflect selection for "rare" codons. Nucleic Acids Res. 14, 7737-7749.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 7737-7749
    • Sharp, P.M.1    Li, W.H.2
  • 15
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluser analysis clearly differentiates highly and lowly expressed genes
    • SHARP, P. M., TUOHY, T. M. & MOSURSKI, K. R. (1986b). Codon usage in yeast: Cluser analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14, 5125-5143.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 16
    • 0022856787 scopus 로고
    • An evolutionary perspective on synonymous codon usage in unicellular organisms
    • SHARP, P. M. & LI, W. H. (1986c). An evolutionary perspective on synonymous codon usage in Unicellular organisms. J. Mol. Evol. 24, 28-38.
    • (1986) J. Mol. Evol. , vol.24 , pp. 28-38
    • Sharp, P.M.1    Li, W.H.2
  • 17
    • 0023762645 scopus 로고
    • Codon usage pattern in E. coli, Bacillus subtilis, Saccharomyces cerevisae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity
    • SHARP, P. M., COWE, E., HIGGINS, D. G. ET AL. (1988). Codon usage pattern in E. coli, Bacillus subtilis, Saccharomyces cerevisae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res. 16, 8207-8211.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 8207-8211
    • Sharp, P.M.1    Cowe, E.2    Higgins, D.G.3
  • 18
    • 0023650543 scopus 로고
    • The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
    • SHARP, P. M. & LI, W. H. (1987). The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 19
    • 0028359705 scopus 로고
    • Codon usage in Caenorhabditis elegans: Delineation of translational selection and mutational bias
    • STENICO, M., ANDREW, T., LLOYD AND SHARP, P. M. (1994). Codon usage in Caenorhabditis elegans: Delineation of translational selection and mutational bias. Nucleic Acids Res. 22, 2437-2446.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2437-2446
    • Stenico, M.1    Andrew, T.2    Lloyd3    Sharp, P.M.4
  • 20
    • 0026691099 scopus 로고
    • The usage of synonymous codons reflects GC and directional mutation pressure
    • SUEOKA, N. (1992). The usage of synonymous codons reflects GC and directional mutation pressure. J. Mol. Evol. 34, 95-114.
    • (1992) J. Mol. Evol. , vol.34 , pp. 95-114
    • Sueoka, N.1
  • 21
    • 0022536971 scopus 로고
    • Effect of distribution of unfavorable codons on the maximum rate of gene expression by an heterologous organism
    • VARENNE, S. & LAZDUNSKI, C. (1986). Effect of distribution of unfavorable codons on the maximum rate of gene expression by an heterologous organism. J. Theor. Biol. 120, 99-100.
    • (1986) J. Theor. Biol. , vol.120 , pp. 99-100
    • Varenne, S.1    Lazdunski, C.2
  • 22
    • 0024844637 scopus 로고
    • The maximum rate of gene expression is dependent on the down stream context of unfavorable codons
    • VARENNE, S., BATY, D., VERHEIJ, H. ET AL. (1989). The maximum rate of gene expression is dependent on the down stream context of unfavorable codons. Biochimie. 71, 1221-1229.
    • (1989) Biochimie. , vol.71 , pp. 1221-1229
    • Varenne, S.1    Baty, D.2    Verheij, H.3
  • 23
    • 0025796711 scopus 로고
    • Codon usage tabulated from the GenBank genetic sequence data
    • WADA, K., WADA, Y., DOI, D. ET AL. (1991). Codon usage tabulated from the GenBank genetic sequence data. Nucleic Acids Res. 19, Suppl., 1981-2004.
    • (1991) Nucleic Acids Res. , vol.19 , Issue.SUPPL. , pp. 1981-2004
    • Wada, K.1    Wada, Y.2    Doi, D.3
  • 24
    • 0004122938 scopus 로고
    • Reprinted with Correction. New York: Addision-Wesley Publishing Company
    • ZUBAY, G. (1984). In: Biochemistry. Reprinted with Correction. New York: Addision-Wesley Publishing Company.
    • (1984) Biochemistry
    • Zubay, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.