Performance of a foot-and-mouth disease virus reverse transcription- polymerase chain reaction with amplification controls between three real-time instruments

Journal of Veterinary Diagnostic Investigation

Volumn 19, Issue 1, 2007, Pages 9-20

  Moniwa, Mariko ^a   Clavijo, Alfonso ^a   Li, Mingyi ^a   Collignon, Brad ^a   Paul Kitching, R ^a  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

Author keywords

Amplification control; Crossing threshold; Foot and mouth disease virus; Real time RT PCR

Indexed keywords

FOOT-AND-MOUTH DISEASE VIRUS; PICORNAVIRIDAE;

ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; FOOT AND MOUTH DISEASE; FOOT AND MOUTH DISEASE VIRUS; GENETICS; INSTRUMENTATION; ISOLATION AND PURIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SHEEP; SWINE; TIME; VIROLOGY;

ANIMALS; CATTLE; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SHEEP; SWINE; TIME FACTORS;

EID: 35748979475     PISSN: 10406387     EISSN: None     Source Type: Journal    
DOI: 10.1177/104063870701900103     Document Type: Article

References (17)

1. Belak S, Thorén P: 2004, Validation and quality control of polymerase chain reaction methods for the diagnosis of infectious diseases. Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (fifth ed.), Ch. 1.1.4, 30-36 Office International des Épizooties (Paris).
2. Beld M, Minnaar R, Weel J, et al.: 2004, Highly sensitive assay for detection of enterovirus in clinical specimens by reverse transcription-PCR with an armored RNA internal control. J Clin Microbiol 42:3059-3064.
3. Callahan JD, Brown F, Osorio FA, et al.: 2002, Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J Am Vet Med Assoc 220:1636-1642.
4. Donia D, Divizia M, Pana A: 2005, Use of armored RNA as as standard to construct a calibration curve for real-time RT-PCR. J Virol Methods 126:157-163.
5. Feng Q, Yu H, Liu Y, et al.: 2004, Genome comparison of a novel foot-and-mouth disease virus with other FMDV strains. Biochem Biophys Res Commun 323:254-263.
6. Hofmann MA: 2003, Construction of an infectious chimeric classical swine fever virus containing the 5'UTR of bovine viral diarrhea virus, and its application as a universal internal positive control in real-time RT-PCR. J Virol Methods 114:77-90.
7. Hoorfar J, Malorny B, Abdulmawjood A, et al.: 2004, Practical considerations in design of internal amplification controls for diagnostic PCR assays. J Clin Microbiol 42:1863-1868.
8. Kitching RP, Barnett PV, Mackay DKJ, Donaldson AI: 2004, Foot and mouth disease. Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (fifth ed.), Ch.2.1.1, 111-128. Office International des Épizooties (Paris).
9. Kutyavin IV, Afonina IA, Mills A, et al.: 2000, 3'-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures. Nucl Acids Res 28:655-661.
10. Moonen P, Boonstra J, van der Honing RH, et al.: 2003, Validation of a LightCycler-based reverse transcription polymerase chain reaction for the detection of foot-and-mouth disease virus. J Virol Methods 113:35-41.
11. Nicholas KB, Nicholas HB Jr, Deerfield DW II: 1997, GeneDoc: analysis and visualization of genetic variation. Embnet News 4(2): 1-4.
12. Oleksiewicz MB, Donaldson AI, Alexandersen S: 2001, Development of a novel real-time RT-PCR assay for quantitation of foot-and-mouth disease virus in diverse porcine tissues. J Virol Methods 92:23-35.
13. Reid SM, Ferris NP, Hutchings GH, et al.: 2001, Diagnosis of foot-and-mouth disease by real-time fluorogenic PCR assay. Vet Rec 149:621-623.
14. Reid SM, Ferris NP, Hutchings GH, et al.: 2002, Detection of all seven serotypes of foot-and-mouth disease virus by real-time, fluorogenic reverse transcription polymerase chain reaction assay. J Virol Methods 105:67-80.
15. Rosenstraus M, Wang Z, Chang SY, et al.: 1998, An internal control for routine diagnostic PCR: design, properties, and effect on clinical performance. J Clin Microbiol 36:191-197.
16. Thompson JD, Higgins DG, Gibson TJ: 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
17. Zhang Z, Alexandersen S: 2003, Detection of carrier cattle and sheep persistently infected with foot-and-mouth disease virus by a rapid real-time RT-PCR assay. J Virol Methods 111:95-100.