-
1
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz, R. K., D. Bartels, A. A. Best, M. DeJongh, T. Disz, R. A. Edwards, K. Formsma, S. Gerdes, E. M. Glass, M. Kubal, F. Meyer, G. J. Olsen, R. Olson, A. L. Osterman, R. A. Overbeek, L. K. McNeil, D. Paarmann, T. Paczian, B. Parrell, G. D. Pusch, C. Reich, R. Stevens, O. Vassieva, V. Vonstein, A. Wilke, and O. Zagnitko. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrell, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
2
-
-
45549100794
-
Molecular basis for the selectivity and specificity of ligand recognition by the family 16 carbohydrate-binding modules from Thermoanaerobacterium polysaccharolyticum ManA
-
Bae, B., S. Ohene-Adjei, S. Kocherginskaya, R. I. Mackie, M. A. Spies, I. K. O. Cann, and S. K. Nair. 2008. Molecular basis for the selectivity and specificity of ligand recognition by the family 16 carbohydrate-binding modules from Thermoanaerobacterium polysaccharolyticum ManA. J. Biol. Chem. 283:12415-12425.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 12415-12425
-
-
Bae, B.1
Ohene-Adjei, S.2
Kocherginskaya, S.3
Mackie, R.I.4
Spies, M.A.5
Cann, I.K.O.6
Nair, S.K.7
-
3
-
-
17744391774
-
Three-dimensional structure of (1,4)-β-D-mannan mannanohydrolase from tomato fruit
-
Bourgault, R., A. J. Oakley, J. D. Bewley, and M. C. J. Wilce. 2005. Three-dimensional structure of (1,4)-β-D-mannan mannanohydrolase from tomato fruit. Protein Sci. 14:1233-1241.
-
(2005)
Protein Sci.
, vol.14
, pp. 1233-1241
-
-
Bourgault, R.1
Oakley, A.J.2
Bewley, J.D.3
Wilce, M.C.J.4
-
4
-
-
0032987380
-
Molecular cloning, sequencing, and expression of a novel multidomain mannanase gene from Thermoanaerobacterium polysaccharolyticum
-
Cann, I. K. O., S. Kocherginskaya, M. R. King, B. A. White, and R. I. Mackie. 1999. Molecular cloning, sequencing, and expression of a novel multidomain mannanase gene from Thermoanaerobacterium polysaccharolyticum. J. Bacteriol. 181:1643-1651.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1643-1651
-
-
Cann, I.K.O.1
Kocherginskaya, S.2
King, M.R.3
White, B.A.4
Mackie, R.I.5
-
5
-
-
0035065199
-
Characterization of two novel saccharolytic, anaerobic thermophiles, Thermoanaerobacterium polysaccharolyticum sp. nov. and Thermoanaerobacterium zeae sp. nov., and emendation of the genus Thermoanaerobacterium
-
Cann, I. K. O., P. G. Stroot, K. R. Mackie, B. A. White, and R. I. Mackie. 2001. Characterization of two novel saccharolytic, anaerobic thermophiles, Thermoanaerobacterium polysaccharolyticum sp. nov. and Thermoanaerobacterium zeae sp. nov., and emendation of the genus Thermoanaerobacterium. Int. J. Syst. Evol. Microbiol. 51:293-302.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 293-302
-
-
Cann, I.K.O.1
Stroot, P.G.2
Mackie, K.R.3
White, B.A.4
Mackie, R.I.5
-
6
-
-
57749089774
-
The Cellvibrio japonicus mannanase CjMAN26C displays a unique exo-mode of action that is conferred by subtle changes to the distal region of the active site
-
Cartmell, A., E. Topakas, V. Ducros, M. D. L. Suits, G. J. Davies, and H. J. Gilbert. 2008. The Cellvibrio japonicus mannanase CjMAN26C displays a unique exo-mode of action that is conferred by subtle changes to the distal region of the active site. J. Biol. Chem. 283:34403-34413.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 34403-34413
-
-
Cartmell, A.1
Topakas, E.2
Ducros, V.3
Suits, M.D.L.4
Davies, G.J.5
Gilbert, H.J.6
-
7
-
-
0033610846
-
The topology of the substrate binding clefts of glycosyl hydrolase family 10 xylanases are not conserved
-
Charnock, S. J., T. D. Spurway, H. Xie, M. H. Beylot, R. Virden, R. A. J. Warren, G. P. Hazlewood, and H. J. Gilbert. 1998. The topology of the substrate binding clefts of glycosyl hydrolase family 10 xylanases are not conserved. J. Biol. Chem. 273:32187-32199.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 32187-32199
-
-
Charnock, S.J.1
Spurway, T.D.2
Xie, H.3
Beylot, M.H.4
Virden, R.5
Warren, R.A.J.6
Hazlewood, G.P.7
Gilbert, H.J.8
-
8
-
-
27944434246
-
Recent structural insights into the expanding world of carbohydrate-active enzymes
-
Davies, G. J., T. M. Gloster, and B. Henrissat. 2005. Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr. Opin. Struct. Biol. 15:637-645.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 637-645
-
-
Davies, G.J.1
Gloster, T.M.2
Henrissat, B.3
-
9
-
-
66749150169
-
Enzymatic deconstruction of xylan for biofuel production
-
Dodd, D., and I. K. O. Cann. 2009. Enzymatic deconstruction of xylan for biofuel production. Glob. Change Biol. Bioenergy 1:2-17.
-
(2009)
Glob. Change Biol. Bioenergy
, vol.1
, pp. 2-17
-
-
Dodd, D.1
Cann, I.K.O.2
-
10
-
-
65549112969
-
Biochemical analysis of a β-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23
-
Dodd, D., S. A. Kocherginskaya, M. A. Spies, K. E. Beery, C. A. Abbas, R. I. Mackie, and I. K. O. Cann. 2009. Biochemical analysis of a β-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23. J. Bacteriol. 191:3328-3338.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3328-3338
-
-
Dodd, D.1
Kocherginskaya, S.A.2
Spies, M.A.3
Beery, K.E.4
Abbas, C.A.5
Mackie, R.I.6
Cann, I.K.O.7
-
11
-
-
0029156053
-
A common protein fold and similar active site in two distinct families of β-glycanases
-
Dominguez, R., H. Souchon, S. Spinelli, Z. Dauter, K. S. Wilson, S. Chauvaux, P. Béguin, and P. M. Alzari. 1995. A common protein fold and similar active site in two distinct families of β-glycanases. Nat. Struct. Mol. Biol. 2:569-576.
-
(1995)
Nat. Struct. Mol. Biol.
, vol.2
, pp. 569-576
-
-
Dominguez, R.1
Souchon, H.2
Spinelli, S.3
Dauter, Z.4
Wilson, K.S.5
Chauvaux, S.6
Béguin, P.7
Alzari, P.M.8
-
12
-
-
77950630801
-
Cell surface xylanases of the glycoside hydrolase family 10 are essential for xylan utilization by Paenibacillus sp. W-61 as a generator of xylo-oligosaccharide inducers for the xylanase genes
-
Fukuda, M., S. Watanabe, S. Yoshida, H. Itoh, Y. Itoh, Y. Kamio, and J. Kaneko. 2010. Cell surface xylanases of the glycoside hydrolase family 10 are essential for xylan utilization by Paenibacillus sp. W-61 as a generator of xylo-oligosaccharide inducers for the xylanase genes. J. Bacteriol. 192:2210-2219.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 2210-2219
-
-
Fukuda, M.1
Watanabe, S.2
Yoshida, S.3
Itoh, H.4
Itoh, Y.5
Kamio, Y.6
Kaneko, J.7
-
13
-
-
0032533450
-
High-resolution native and complex structures of thermostable β-mannanase from Thermomonospora fusca-substrate specificity in glycosyl hydrolase family 5
-
Hilge, M., S. M. Gloor, W. Rypniewski, O. Sauer, T. D. Heightman, W. Zimmermann, K. Winterhalter, and K. Piontek. 1998. High-resolution native and complex structures of thermostable β-mannanase from Thermomonospora fusca-substrate specificity in glycosyl hydrolase family 5. Structure 6:1433-1444.
-
(1998)
Structure
, vol.6
, pp. 1433-1444
-
-
Hilge, M.1
Gloor, S.M.2
Rypniewski, W.3
Sauer, O.4
Heightman, T.D.5
Zimmermann, W.6
Winterhalter, K.7
Piontek, K.8
-
14
-
-
0037799892
-
The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation
-
Hogg, D., G. Pell, P. Dupree, F. Goubet, S. M. Martín-Orúe, S. Armand, and H. J. Gilbert. 2003. The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation. Biochem. J. 371:1027-1043.
-
(2003)
Biochem. J.
, vol.371
, pp. 1027-1043
-
-
Hogg, D.1
Pell, G.2
Dupree, P.3
Goubet, F.4
Martín-Orúe, S.M.5
Armand, S.6
Gilbert, H.J.7
-
15
-
-
0035903165
-
Crystal structure of mannanase 26A from Pseudomonas cellulosa and analysis of residues involved in substrate binding
-
Hogg, D., E. J. Woo, D. N. Bolam, V. A. McKie, H. J. Gilbert, and R. W. Pickersgill. 2001. Crystal structure of mannanase 26A from Pseudomonas cellulosa and analysis of residues involved in substrate binding. J. Biol. Chem. 276:31186-31192.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 31186-31192
-
-
Hogg, D.1
Woo, E.J.2
Bolam, D.N.3
McKie, V.A.4
Gilbert, H.J.5
Pickersgill, R.W.6
-
16
-
-
0037174462
-
Purification and characterization of a thermostable α-galactosidase from Thermoanaerobacterium polysaccharolyticum
-
King, M. R., B. A. White, H. P. Blaschek, B. M. Chassy, R. I. Mackie, and I. K. O. Cann. 2002. Purification and characterization of a thermostable α-galactosidase from Thermoanaerobacterium polysaccharolyticum. J. Agric. Food Chem. 50:5676-5682.
-
(2002)
J. Agric. Food Chem.
, vol.50
, pp. 5676-5682
-
-
King, M.R.1
White, B.A.2
Blaschek, H.P.3
Chassy, B.M.4
Mackie, R.I.5
Cann, I.K.O.6
-
17
-
-
0042063909
-
Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan
-
Kittur, F. S., S. L. Mangala, A. A. Rus'd, M. Kitaoka, H. Tsujibo, and K. Hayashi. 2003. Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan. FEBS Lett. 549:147-151.
-
(2003)
FEBS Lett.
, vol.549
, pp. 147-151
-
-
Kittur, F.S.1
Mangala, S.L.2
Rus'd, A.A.3
Kitaoka, M.4
Tsujibo, H.5
Hayashi, K.6
-
18
-
-
0036039912
-
Clostridium thermocellum cellulase CelT, a family 9 endoglucanase without an Ig-like domain or family 3c carbohydrate-binding module
-
Kurokawa, J., E. Hemjinda, T. Arai, T. Kimura, K. Sakka, and K. Ohmiya. 2002. Clostridium thermocellum cellulase CelT, a family 9 endoglucanase without an Ig-like domain or family 3c carbohydrate-binding module. Appl. Microbiol. Biotechnol. 59:455-461.
-
(2002)
Appl. Microbiol. Biotechnol.
, vol.59
, pp. 455-461
-
-
Kurokawa, J.1
Hemjinda, E.2
Arai, T.3
Kimura, T.4
Sakka, K.5
Ohmiya, K.6
-
19
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
20
-
-
0030032178
-
Carbohydrate analyses with high-performance anion-exchange chromatography
-
DOI 10.1016/0021-9673(95)00222-7
-
Lee, Y. C. 1996. Carbohydrate analyses with high-performance anion-exchange chromatography. J. Chromatogr. A 720:137-149. (Pubitemid 26037611)
-
(1996)
Journal of Chromatography a
, vol.720
, Issue.1-2
, pp. 137-149
-
-
Lee, Y.C.1
-
21
-
-
44449092228
-
Description of Caldanaerobius fijiensis gen. nov., sp. nov., an inulin-degrading, ethanol-producing, thermophilic bacterium from a Fijian hot spring sediment, and reclassification of Thermoanaerobacterium polysaccharolyticum and Thermoanaerobacterium zeae as Caldanaerobius polysaccharolyticus comb. nov. and Caldanaerobius zeae comb. nov
-
Lee, Y. J., R. I. Mackie, I. K. O. Cann, and J. Wiegel. 2008. Description of Caldanaerobius fijiensis gen. nov., sp. nov., an inulin-degrading, ethanol-producing, thermophilic bacterium from a Fijian hot spring sediment, and reclassification of Thermoanaerobacterium polysaccharolyticum and Thermoanaerobacterium zeae as Caldanaerobius polysaccharolyticus comb. nov. and Caldanaerobius zeae comb. nov. Int. J. Syst. Evol. Microbiol. 58:666-670.
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 666-670
-
-
Lee, Y.J.1
Mackie, R.I.2
Cann, I.K.O.3
Wiegel, J.4
-
22
-
-
25444475768
-
The structure and characterization of a modular endo-β-1, 4-mannanase from Cellulomonas fimi
-
Le Nours, J., L. Anderson, D. Stoll, H. Stalbrand, and L. L. Leggio. 2005. The structure and characterization of a modular endo-β-1, 4-mannanase from Cellulomonas fimi. Biochemistry 44:12700-12708.
-
(2005)
Biochemistry
, vol.44
, pp. 12700-12708
-
-
Le Nours, J.1
Anderson, L.2
Stoll, D.3
Stalbrand, H.4
Leggio, L.L.5
-
23
-
-
0015333650
-
A new reaction for colorimetric determination of carbohydrates
-
Lever, M. 1972. A new reaction for colorimetric determination of carbohydrates. Anal. Biochem. 47:273-279.
-
(1972)
Anal. Biochem.
, vol.47
, pp. 273-279
-
-
Lever, M.1
-
24
-
-
0025729215
-
Subsite structure of Saccharomycopsis α-amylase secreted from Saccharomyces cerevisiae
-
Matsui, I., K. Ishikawa, E. Matsui, S. Miyairi, S. Fukui, and K. Honda. 1991. Subsite structure of Saccharomycopsis α-amylase secreted from Saccharomyces cerevisiae. J. Biochem. 109:566-569.
-
(1991)
J. Biochem.
, vol.109
, pp. 566-569
-
-
Matsui, I.1
Ishikawa, K.2
Matsui, E.3
Miyairi, S.4
Fukui, S.5
Honda, K.6
-
25
-
-
0028321448
-
Pullulanase of Thermoanaerobacterium thermosulfurigenes EM1 (Clostridium thermosulfurogenes): Molecular analysis of the gene, composite structure of the enzyme, and a common model for its attachment to the cell surface
-
Matuschek, M., G. Burchhardt, K. Sahm, and H. Bahl. 1994. Pullulanase of Thermoanaerobacterium thermosulfurigenes EM1 (Clostridium thermosulfurogenes): molecular analysis of the gene, composite structure of the enzyme, and a common model for its attachment to the cell surface. J. Bacteriol. 176:3295-3302.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3295-3302
-
-
Matuschek, M.1
Burchhardt, G.2
Sahm, K.3
Bahl, H.4
-
26
-
-
42649129680
-
An overview of mannan structure and mannan-degrading enzyme systems
-
Moreira, L. R. S., and E. X. F. Filho. 2008. An overview of mannan structure and mannan-degrading enzyme systems. Appl. Microbiol. Biotechnol. 79:165-178.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.79
, pp. 165-178
-
-
Moreira, L.R.S.1
Filho, E.X.F.2
-
27
-
-
0027095684
-
Site-directed mutagenesis of conserved residues of Clostridium thermocellum endoglucanase CelC
-
Navas, J., and P. Béguin. 1992. Site-directed mutagenesis of conserved residues of Clostridium thermocellum endoglucanase CelC. Biochem. Biophys. Res. Commun. 189:807-812.
-
(1992)
Biochem. Biophys. Res. Commun.
, vol.189
, pp. 807-812
-
-
Navas, J.1
Béguin, P.2
-
28
-
-
33745161547
-
Carbohydrate binding modules: Biochemical properties and novel applications
-
Shoseyov, O., Z. Shani, and I. Levy. 2006. Carbohydrate binding modules: biochemical properties and novel applications. Microbiol. Mol. Biol. Rev. 70:283-295.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 283-295
-
-
Shoseyov, O.1
Shani, Z.2
Levy, I.3
-
29
-
-
67651211619
-
Understanding how diverse mannanases recognise heterogeneous substrates
-
Tailford, L. E., V. M. Ducros, J. E. Flint, S. M. Roberts, C. Morland, D. L. Zechel, N. Smith, M. E. Bjornvad, T. V. Borchert, and K. S. Wilson. 2009. Understanding how diverse mannanases recognise heterogeneous substrates. Biochemistry 48:7009-7018.
-
(2009)
Biochemistry
, vol.48
, pp. 7009-7018
-
-
Tailford, L.E.1
Ducros, V.M.2
Flint, J.E.3
Roberts, S.M.4
Morland, C.5
Zechel, D.L.6
Smith, N.7
Bjornvad, M.E.8
Borchert, T.V.9
Wilson, K.S.10
-
30
-
-
15744367514
-
Crystal structure and binding properties of the Serratia marcescens chitin-binding protein CBP 21
-
Vaaje-Kolstad, G., D. R. Houston, A. H. K. Riemen, V. G. H. Eijsink, and D. M. F. van Aalten. 2005. Crystal structure and binding properties of the Serratia marcescens chitin-binding protein CBP 21. J. Biol. Chem. 280:11313-11319.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 11313-11319
-
-
Vaaje-Kolstad, G.1
Houston, D.R.2
Riemen, A.H.K.3
Eijsink, V.G.H.4
Van Aalten, D.M.F.5
-
31
-
-
0030271979
-
Eliminating monosaccharide peak tailing in high pH anion-exchange chromatography with pulsed amperometric detection
-
Weitzhandler, M., R. Slingsby, J. Jagodzinski, C. Pohl, L. Narayanan, and N. Avdalovic. 1996. Eliminating monosaccharide peak tailing in high pH anion-exchange chromatography with pulsed amperometric detection. Anal. Biochem. 241:135-136.
-
(1996)
Anal. Biochem.
, vol.241
, pp. 135-136
-
-
Weitzhandler, M.1
Slingsby, R.2
Jagodzinski, J.3
Pohl, C.4
Narayanan, L.5
Avdalovic, N.6
-
32
-
-
77951630910
-
Thermostable enzymes as biocatalysts in the biofuel industry
-
Yeoman, C. J., Y. J. Han, D. Dodd, C. M. Schroeder, R. I. Mackie, and I. K. O. Cann. 2010. Thermostable enzymes as biocatalysts in the biofuel industry. Adv. Appl. Microbiol. 70:1-55.
-
(2010)
Adv. Appl. Microbiol.
, vol.70
, pp. 1-55
-
-
Yeoman, C.J.1
Han, Y.J.2
Dodd, D.3
Schroeder, C.M.4
Mackie, R.I.5
Cann, I.K.O.6
|