Genetic assessment of apple germplasm in Bosnia and Herzegovina using microsatellite and morphologic markers

Scientia Horticulturae

Volumn 126, Issue 2, 2010, Pages 164-171

  Gasi, Fuad ^a   Simon, Silvio ^b   Pojskic, Naris ^c   Kurtovic, Mirsad ^a   Pejic, Ivan ^b  

^a UNIVERSITY OF SARAJEVO   (Bosnia and Herzegovina)

^b UNIVERSITY OF ZAGREB   (Croatia)

^c Institute for Genetic Engineering and Biotechnology   (Bosnia and Herzegovina)

Author keywords

Genetic differentiation; Malus domestica Borkh.; Morphology; Simple sequence repeats (SSRs); Traditional cultivars

Indexed keywords

AGRONOMY; CLUSTER ANALYSIS; CULTIVAR; DATA SET; DECIDUOUS TREE; FRUIT; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC MARKER; GERMPLASM; MORPHOLOGY; POLYMORPHISM; VARIANCE ANALYSIS;

BOSNIA AND HERZEGOVINA;

MALUS; MALUS X DOMESTICA;

EID: 77955924091     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2010.07.002     Document Type: Article

References (35)

1. Anderson M.J. A new method for non-parametric multivariate analysis of variance. Austral Ecology 2001, 26:32-46.
2. Belkhir, K., Borsa, P., Chikhi, L., Raufast, N., Bonhomme, F., 2001. GENETIX 4.02, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier, France.
3. Bruford M.W., Ciofi C., Funk S.M. Characteristics of microsatellites. Molecular Tools for Screening Biodiversity 1998, 202-205. Chapman & Hall, London. A. Karp, P.G. Isaac, D.S. Ingram (Eds.).
4. Bruvo R., Michiels K.N., D'Souza T.G., Schulenburg H. A simple method for the calculation of microsatellite genotype distances of ploidy level. Molecular Ecology 2004, 13:2101-2106.
5. Bubić Š. Specijalno voćarstvo 1952, Veselin Masleša, Sarajevo.
6. Clarke K.R. Non-parametric multivariate analysis of changes in community structure. Australian Journal of Ecology 1993, 18:117-143.
7. Coart E., Vekemans X., Smulders M.J.M., Wagner I., Huylenbroeck J., Bockstaele E., Roldan-Ruiz I. Genetic variation in the endangered wild apple (Malus sylvestris (L.) Mill.) in Belgium as revealed by amplified fragment length polymorphism and microsatellite markers. Molecular Ecology 2003, 12:845-857.
8. Currie A.J., Ganeshanandam S., Noiton D.A., Garrick D., Shelbourne C.J.A., Oraguzie N. Quantitative evaluation of apple (Malus × domestica Borkh.) fruit shape by principal component analyses of Fourier descriptors. Euphytica 2000, 111:219-227.
9. Di Rienzo A., Peterson A.C., Garza J.C., Valdes A.M., Slatkin M., Freimer N.B. Mutational processes of simple-sequence repeat loci in human populations. Proceedings of National Academy of Sciences of the United States of America 1994, 91:3166-3170.
10. Exoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
11. Garkava-Gustavsson L., Kolodinska-Brantestam K., Šehić J., Nybom H. Molecular characterization of indigenous Swedish apple cultivars based on SSR and S-allele analysis. Hereditas 2008, 145:99-112.
12. Gharghani A., Zamani Z., Talaie A., Oraguzie C.N., Fatahi R., Hajnajari H., Wiedow C., Gardiner S.E. Genetic identity and relationships of Iranian apple (Malus × domestica Borkh.) cultivars and landraces, wild Malus species and representative old apple cultivars based on simple sequence repeat (SSR) markers analysis. Genetic Resources and Crop Evolution 2009, 56:829-842.
13. Gianfranceschi L., Seglia N., Tarchini R., Komjanc M., Gessler C. Simple sequence repeats for the genetic analyses of apple. Theoretical and Applied Genetics 1998, 96:1069-1079.
14. Goulao L., Oliveira C.M. Molecular characterisation of cultivars of apple (Malus × domestica Borkh.) using microsatellite (SSR and ISSR) markers. Euphytica 2001, 122:81-89.
15. Guarino C., Santoro S., De Simone L., Lain O., Cipriani G., Testolin R. Genetic diversity in a collection of ancient cultivars of apple (Malus × domestica Borkh.) as revealed by SSR-based fingerprinting. Journal of Horticultural Science and Biotechnology 2006, 81:39-44.
16. Guilford P., Prakash S., Zhu J.M., Rikkerink E., Gardiner S., Bassett H., Forster R. Microsatellites in Malus × domestica (apple): abundance, polymorphism and cultivar identification. Theoretical and Applied Genetics 1997, 94:249-254.
17. Hammer O., Harper D.A.T., Ryan P.D. Past: Paleontological Statistics Software Package for education and data analysis. Palaeontologia Electronica 2001, 4(1). art. 4: 9pp.
18. Hardy O.J., Vekemans X. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2002, 2:618-620.
19. Hokanson S.C., Lamboy W.F., Szewc-McFadden A.K., McFerson J.R. Microsatellite (SSR) variation in a collection of Malus (apple) species and hybrids. Euphytica 2001, 118:281-294.
20. IBGRI Descriptor List for Apple (Malus) 1982, Intl. Board Plant Genet. Resources, Rome.
21. International Union for the Protection of New Varieties of Plants Draft guidelines for the conduct of test for distinctness, homogeneity and stability (APPLE) 1974, Intl. Union Protection New Varieties Plants.
22. Kumar S., Nei M., Dudley J., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics 2008, 4:299-306.
23. Kurtović M., Drkenda P., Kapur L., Gaši F., Hadžiabulić S. Identification and conservation of the autochthonic gene-found in Bosnia and Herzegovina. Proceeding of the 40th Croatian Symposium on Agriculture, vol. 11 2005, 715-716. V. Kovačević, S. Jovanovac (Eds.).
24. Larsen A.S., Asmussen C.B., Coart E., Olrik D.C., KjaeD;r E.D. Hybridization and genetic variation in Danish populations of European crab apple (Malus sylvestris). Tree Genetics and Genomes 2006, 2:86-97.
25. Liebhard R., Gianfranceschi L., Koller B., Ryder C.D., Tarchini R., Van De Weg E., Gessler C. Development and characterization of 140 new microsatellite in apple (Malus × domestica Borkh.). Molecular Breeding 2002, 10:217-241.
26. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Research 1967, 27:209-220.
27. Meirmans P., Van Tienderen P. Genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes 2004, 4(4):792-794.
28. Mišić, P.D., 1994. Jabuka. Nolit, Beogard.
29. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
30. Ohta T., Kimura M. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genetical Research 1973, 22(2):201-204.
31. Pereira-Lorenzo S., Ramos-Cabrer A.M., Ascasibar-Errasti J., Pineiro-Andion J. Analysis of apple germplasm in Northwestern Spain. Journal of the American Society for Horticultural Science 2003, 128:67-84.
32. Pereira-Lorenzo S., Ramos-Cabrer A.M., Diaz-Hernandez M.B. Evaluation of genetic identity and variation of local apple cultivars (Malus × domestica Borkh.) from Spain using microsatelite markers. Genetic Resources and Crop Evolution 2007, 54:405-429.
33. Pereira-Lorenzo S., Ramos-Cabrer A.M., Gonzalez-Diaz A.J., Diaz-Hernandez M.B. Genetic assessment of local apple cultivars from La Palma Spain, using simple sequence repeats (SSRs). Scientia Horticulturae 2008, 117:160-166.
34. Statistical bulletin, Plant production in Federation Bosnia and Herzegovina in 2008, 2009 Bosnia and Herzegovina, Federation of Bosnia and Herzegovina 2009, Federal Office of Statistics, Sarajevo.
35. Weir B.S., Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38:1358-1370.