메뉴 건너뛰기




Volumn 9, Issue 3, 2010, Pages 603-624

Structure versus function: A topological perspective on immune networks

Author keywords

Artificial immune systems; Complex networks; Tolerance; Topology

Indexed keywords

ALGORITHM; ARTIFICIAL IMMUNE SYSTEM; ARTIFICIAL INTELLIGENCE; CELL INTERACTION; CONTROLLED STUDY; IMMUNE SYSTEM; IMMUNOCOMPETENT CELL; IMMUNOLOGICAL TOLERANCE; IMMUNOLOGY; METHODOLOGY; REVIEW; STRUCTURE ACTIVITY RELATION; THEORY;

EID: 77955923245     PISSN: 15677818     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11047-009-9138-8     Document Type: Review
Times cited : (7)

References (51)
  • 1
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • 10.1103/RevModPhys.74.47
    • R Albert AL Barabási 2002 Statistical mechanics of complex networks Rev Mod Phys 74 47 97 10.1103/RevModPhys.74.47
    • (2002) Rev Mod Phys , vol.74 , pp. 47-97
    • Albert, R.1    Barabási, A.L.2
  • 3
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • 10.1126/science.286.5439.509 2091634
    • AL Barabási R Albert 1999 Emergence of scaling in random networks Science 286 5439 509 512 10.1126/science.286.5439.509 2091634
    • (1999) Science , vol.286 , Issue.5439 , pp. 509-512
    • Barabási, A.L.1    Albert, R.2
  • 4
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • 10.1038/nrg1272
    • L Barabási Z Oltvai 2004 Network biology: understanding the cell's functional organization Nat Rev Genet 5 101 113 10.1038/nrg1272
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabási, L.1    Oltvai, Z.2
  • 5
    • 33947205035 scopus 로고    scopus 로고
    • Idiotypic networks: Towards a renaissance?
    • U Behn 2007 Idiotypic networks: towards a renaissance? Immunological Reviews 216 142 152
    • (2007) Immunological Reviews , vol.216 , pp. 142-152
    • Behn, U.1
  • 6
    • 21244459951 scopus 로고    scopus 로고
    • Self-assertion vs self-recogntion: A tribute to francisco varela
    • Bersini H (2002) Self-assertion vs self-recogntion: a tribute to francisco varela. In: Proceedings of ICARIS 2002, pp 107-112
    • (2002) Proceedings of ICARIS 2002 , pp. 107-112
    • Bersini, H.1
  • 7
    • 77955923662 scopus 로고    scopus 로고
    • Revisiting immune networks
    • Bersini H (2003) Revisiting immune networks. In: Proceedings of ECAL 2003, pp 191-198
    • (2003) Proceedings of ECAL 2003 , pp. 191-198
    • Bersini, H.1
  • 8
    • 33745954243 scopus 로고    scopus 로고
    • Growing biological networks: Beyond the gene-duplication model
    • 10.1016/j.jtbi.2005.12.012 2254582
    • H Bersini T Lenaerts FC Santos 2006 Growing biological networks: beyond the gene-duplication model J Theor Biol 241 3 488 505 10.1016/j.jtbi.2005.12.012 2254582
    • (2006) J Theor Biol , vol.241 , Issue.3 , pp. 488-505
    • Bersini, H.1    Lenaerts, T.2    Santos, F.C.3
  • 9
    • 0029586931 scopus 로고
    • Natural tolerance in a simple immune network
    • 10.1006/jtbi.1995.0239
    • V Calenbuhr H Bersini J Stewart F Varela 1995 Natural tolerance in a simple immune network J Theor Biol 177 199 213 10.1006/jtbi.1995.0239
    • (1995) J Theor Biol , vol.177 , pp. 199-213
    • Calenbuhr, V.1    Bersini, H.2    Stewart, J.3    Varela, F.4
  • 10
    • 0028168537 scopus 로고
    • Rethinking "Shape Space": Evidence from simulated docking suggests that steric shape complementarity is not limiting for antibody-antigen recognition and idiotypic interactions
    • 10.1006/jtbi.1994.1161
    • J Carneiro J Stewart 1994 Rethinking "Shape Space": evidence from simulated docking suggests that steric shape complementarity is not limiting for antibody-antigen recognition and idiotypic interactions J Theor Biol 169 390 402 10.1006/jtbi.1994.1161
    • (1994) J Theor Biol , vol.169 , pp. 390-402
    • Carneiro, J.1    Stewart, J.2
  • 11
    • 0030597105 scopus 로고    scopus 로고
    • A model of the immune network with B-T cell co-operation. II-the simulation of ontogenesis
    • 10.1006/jtbi.1996.0193
    • J Carneiro A Coutinho J Stewart 1996 A model of the immune network with B-T cell co-operation. II-the simulation of ontogenesis J Theor Biol 182 531 554 10.1006/jtbi.1996.0193
    • (1996) J Theor Biol , vol.182 , pp. 531-554
    • Carneiro, J.1    Coutinho, A.2    Stewart, J.3
  • 12
    • 34250890735 scopus 로고    scopus 로고
    • Real and artificial immune systems: Computing the state of the body
    • Cohen IR (2007) Real and artificial immune systems: computing the state of the body. Immunol Rev 7:569-574
    • (2007) Immunol Rev , vol.7 , pp. 569-574
    • Cohen, I.R.1
  • 13
    • 15244363969 scopus 로고    scopus 로고
    • T-regs in T-cell vaccination: Exploring the regulation of regulation
    • IR Cohen FJ Quintana A Mimran 2004 T-regs in T-cell vaccination: exploring the regulation of regulation J Clin Invest 114 1227 1232
    • (2004) J Clin Invest , vol.114 , pp. 1227-1232
    • Cohen, I.R.1    Quintana, F.J.2    Mimran, A.3
  • 14
    • 0036865633 scopus 로고    scopus 로고
    • Immunology at the crossroads
    • Coutinho A (2002) Immunology at the crossroads. EMBO Rep 3(11):1008-1011
    • (2002) EMBO Rep , vol.3 , Issue.11 , pp. 1008-1011
    • Coutinho, A.1
  • 15
    • 0037301790 scopus 로고    scopus 로고
    • Will the idiotypic network help to solve natural tolerance?
    • Coutinho A (2003) Will the idiotypic network help to solve natural tolerance? Trends Immunol 24(2):53-54
    • (2003) Trends Immunol , vol.24 , Issue.2 , pp. 53-54
    • Coutinho, A.1
  • 20
    • 34248206078 scopus 로고    scopus 로고
    • The immune-body cytokine network defines a social architecture of cell interactions
    • Frankenstein Z, Alon U, Cohen IR (2006) The immune-body cytokine network defines a social architecture of cell interactions. Biol Direct 1(32):1-15
    • (2006) Biol Direct , vol.1 , Issue.32 , pp. 1-15
    • Frankenstein, Z.1    Alon, U.2    Cohen, I.R.3
  • 21
    • 14644396645 scopus 로고    scopus 로고
    • Functional cartography of complex metabolic networks
    • Guimerá R, Amaral LAN (2005) Functional cartography of complex metabolic networks. Nature 433:895-900
    • (2005) Nature , vol.433 , pp. 895-900
    • Guimerá, R.1    Amaral, L.A.N.2
  • 22
    • 24944442468 scopus 로고    scopus 로고
    • Effect of sampling on topology predictions of protein-protein interaction networks
    • Han J-DJ, Dupuy D, Bertin N, Cusick M, Vidal M (2005) Effect of sampling on topology predictions of protein-protein interaction networks. Nat Biotechnol 23(7):839-844
    • (2005) Nat Biotechnol , vol.23 , Issue.7 , pp. 839-844
    • Han, J.-D.J.1    Dupuy, D.2    Bertin, N.3    Cusick, M.4    Vidal, M.5
  • 23
    • 33750273897 scopus 로고    scopus 로고
    • Not all balls are round: An investigation of alternative recognition-region shapes
    • Jacob C, Pilat ML, Bentley PJ, Timmis JI (eds) Artificial immune systems. Springer, Heidelberg
    • Hart E (2005) Not all balls are round: an investigation of alternative recognition-region shapes. In: Jacob C, Pilat ML, Bentley PJ, Timmis JI (eds) Artificial immune systems, Proceedings of ICARIS 2005, vol 3627. Springer, Heidelberg, pp 9-42
    • (2005) Proceedings of ICARIS 2005 , vol.3627 , pp. 9-42
    • Hart, E.1
  • 24
    • 33750994034 scopus 로고    scopus 로고
    • Analysis of a growth model for idiotypic networks
    • ICARIS 2006. Springer, Berlin
    • Hart E (2006) Analysis of a growth model for idiotypic networks. In: ICARIS 2006, Lecture notes in computer science, vol 4163. Springer, Berlin, pp 66-80
    • (2006) Lecture Notes in Computer Science , vol.4163 , pp. 66-80
    • Hart, E.1
  • 25
    • 34548484455 scopus 로고    scopus 로고
    • The impact of the shape of antibody recognition regions on the emergence of idiotypic networks
    • Hart E, Ross P (2005) The impact of the shape of antibody recognition regions on the emergence of idiotypic networks. Int J Unconventional Comput 1(3):281-313
    • (2005) Int J Unconventional Comput , vol.1 , Issue.3 , pp. 281-313
    • Hart, E.1    Ross, P.2
  • 26
    • 33751007268 scopus 로고    scopus 로고
    • Tolerance vs intolerance: How affinity defines topology in an idiotypic network
    • Jacob C, Pilat ML, Bentley PJ, Timmis JI (eds) ICARIS 2006. Springer, Heidelberg
    • Hart E, Bersini H, Santos FC (2006) Tolerance vs intolerance: how affinity defines topology in an idiotypic network. In: Jacob C, Pilat ML, Bentley PJ, Timmis JI (eds) ICARIS 2006, Lecture notes in computer science, vol 4163. Springer, Heidelberg, pp 109-121
    • (2006) Lecture Notes in Computer Science , vol.4163 , pp. 109-121
    • Hart, E.1    Bersini, H.2    Santos, F.C.3
  • 27
    • 38349023426 scopus 로고    scopus 로고
    • Topological constraints in the evolution of idiotypic networks
    • ICARIS 2007. Springer, Heidelberg
    • Hart E, Bersini H, Santos FC (2007a) Topological constraints in the evolution of idiotypic networks. In: ICARIS 2007, Lecture notes in computer science, vol 4628. Springer, Heidelberg, pp 252-263
    • (2007) Lecture Notes in Computer Science , vol.4628 , pp. 252-263
    • Hart, E.1    Bersini, H.2    Santos, F.C.3
  • 28
    • 35848937774 scopus 로고    scopus 로고
    • How affinity influences tolerance in an idiotypic network
    • 10.1016/j.jtbi.2007.07.019
    • E Hart H Bersini FC Santos 2007 How affinity influences tolerance in an idiotypic network J Theor Biol 249 3 422 436 10.1016/j.jtbi.2007.07.019
    • (2007) J Theor Biol , vol.249 , Issue.3 , pp. 422-436
    • Hart, E.1    Bersini, H.2    Santos, F.C.3
  • 29
    • 1642411921 scopus 로고    scopus 로고
    • A reinforcement learning method for dynamic behavior arbitration of autonomous mobile robots based on the immunological information processing mechanisms
    • A Ishiguro T Kondo Y Watanabe Y Uchikawa 1997 A reinforcement learning method for dynamic behavior arbitration of autonomous mobile robots based on the immunological information processing mechanisms Trans IEE Japan 117-C 1 42 49
    • (1997) Trans IEE Japan , vol.117 C , Issue.1 , pp. 42-49
    • Ishiguro, A.1    Kondo, T.2    Watanabe, Y.3    Uchikawa, Y.4
  • 30
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • 10.1038/35075138
    • H Jeong SP Mason A Barabsi ZN Oltvai 2001 Lethality and centrality in protein networks Nature 411 41 42 10.1038/35075138
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabsi, A.3    Oltvai, Z.N.4
  • 31
    • 0021837440 scopus 로고
    • The generative grammar of the immune system
    • Jerne N (1985) The generative grammar of the immune system. Science 4(4):439-451
    • (1985) Science , vol.4 , Issue.4 , pp. 439-451
    • Jerne, N.1
  • 32
    • 33644560274 scopus 로고    scopus 로고
    • Recombinant idiotypic tcrβ chain immunization in mice generates antigen specific T-cell response
    • 10.1016/j.molimm.2005.10.002
    • G Lal MS Shaila R Nayak 2006 Recombinant idiotypic tcrβ chain immunization in mice generates antigen specific T-cell response Mol Immunol 43 1549 1556 10.1016/j.molimm.2005.10.002
    • (2006) Mol Immunol , vol.43 , pp. 1549-1556
    • Lal, G.1    Shaila, M.S.2    Nayak, R.3
  • 33
    • 0035689341 scopus 로고    scopus 로고
    • Infection dynamics on scale-free networks
    • May RM, Lloyd AL (2001) Infection dynamics on scale-free networks. Phys Rev E 64(6 Pt 2):66112
    • (2001) Phys Rev E , vol.64 , Issue.6 PART 2 , pp. 66112
    • May, R.M.1    Lloyd, A.L.2
  • 35
    • 20644444104 scopus 로고    scopus 로고
    • Role of complementary proteins in autoimmunity: A old idea re-emerges with new twists
    • 10.1016/j.it.2005.05.001
    • KL McGuire DS Holmes 2005 Role of complementary proteins in autoimmunity: a old idea re-emerges with new twists Trends Immunol 26 367 372 10.1016/j.it.2005.05.001
    • (2005) Trends Immunol , vol.26 , pp. 367-372
    • McGuire, K.L.1    Holmes, D.S.2
  • 36
    • 0038718854 scopus 로고    scopus 로고
    • Structure and function of complex networks
    • 1029.68010 10.1137/S003614450342480 2010377
    • MEJ Newman 2003 Structure and function of complex networks SIAM Rev 45 167 256 1029.68010 10.1137/S003614450342480 2010377
    • (2003) SIAM Rev , vol.45 , pp. 167-256
    • Newman, M.E.J.1
  • 37
  • 38
    • 0024472594 scopus 로고
    • Immune network theory
    • 10.1111/j.1600-065X.1989.tb00025.x
    • A Perelson 1989 Immune network theory Immunol Rev 10 5 36 10.1111/j.1600-065X.1989.tb00025.x
    • (1989) Immunol Rev , vol.10 , pp. 5-36
    • Perelson, A.1
  • 39
    • 0000432228 scopus 로고
    • Networks of scientific papers
    • 10.1126/science.149.3683.510
    • DJ Price 1965 Networks of scientific papers Science 149 510 515 10.1126/science.149.3683.510
    • (1965) Science , vol.149 , pp. 510-515
    • Price, D.J.1
  • 40
    • 33644751686 scopus 로고    scopus 로고
    • Evolutionary dynamics of social dilemmas in structured heterogeneous populations
    • 10.1073/pnas.0508201103
    • FC Santos JM Pacheco T Lenaerts 2006 Evolutionary dynamics of social dilemmas in structured heterogeneous populations Proc Natl Acad Sci USA 103 9 3490 3494 10.1073/pnas.0508201103
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.9 , pp. 3490-3494
    • Santos, F.C.1    Pacheco, J.M.2    Lenaerts, T.3
  • 41
    • 1842507998 scopus 로고    scopus 로고
    • The idiotypic network in autoimmnunity
    • 10.1038/nm0104-17
    • Y Shoenfeld 2004 The idiotypic network in autoimmnunity Nat Med 10 17 18 10.1038/nm0104-17
    • (2004) Nat Med , vol.10 , pp. 17-18
    • Shoenfeld, Y.1
  • 42
    • 3142738718 scopus 로고    scopus 로고
    • The affirmation of self: A new perspective on the immune system
    • 10.1162/1064546041255593
    • J Stewart 2004 The affirmation of self: a new perspective on the immune system Artif Life (2004) 10 3 261 276 10.1162/1064546041255593
    • (2004) Artif Life (2004) , vol.10 , Issue.3 , pp. 261-276
    • Stewart, J.1
  • 44
    • 33751016361 scopus 로고    scopus 로고
    • On the use of hyperspheres in artificial immune systems as antibody recognition regions
    • Lecture notes in computer science. Springer, Berlin
    • Stibor T, Timmis J, Eckert C (2006) On the use of hyperspheres in artificial immune systems as antibody recognition regions. In: Proceedings of ICARIS 2006, Lecture notes in computer science. Springer, Berlin, pp 215-228
    • (2006) Proceedings of ICARIS 2006 , pp. 215-228
    • Stibor, T.1    Timmis, J.2    Eckert, C.3
  • 45
    • 15444372528 scopus 로고    scopus 로고
    • Subnets of scale-free networks are not scale-free: Sampling properties of networks
    • 10.1073/pnas.0501179102
    • MPH Stumpf C Wiuf RM May 2005 Subnets of scale-free networks are not scale-free: sampling properties of networks Proc Natl Acad Sci USA 102 4221 4224 10.1073/pnas.0501179102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4221-4224
    • Stumpf, M.P.H.1    Wiuf, C.2    May, R.M.3
  • 46
    • 24944565272 scopus 로고    scopus 로고
    • Some protein interaction data do not exhibit power-law statistics
    • 10.1016/j.febslet.2005.08.024
    • R Tanaka TM Yi J Doyle 2005 Some protein interaction data do not exhibit power-law statistics FEBS Lett 579 5140 5144 10.1016/j.febslet.2005.08.024
    • (2005) FEBS Lett , vol.579 , pp. 5140-5144
    • Tanaka, R.1    Yi, T.M.2    Doyle, J.3
  • 47
    • 0035370412 scopus 로고    scopus 로고
    • A resource limited artificial immune system for data analysis
    • 10.1016/S0950-7051(01)00088-0
    • J Timmis M Neal 2001 A resource limited artificial immune system for data analysis Knowl Based Syst 14 121 130 10.1016/S0950-7051(01)00088-0
    • (2001) Knowl Based Syst , vol.14 , pp. 121-130
    • Timmis, J.1    Neal, M.2
  • 48
    • 74549139894 scopus 로고    scopus 로고
    • An interdisciplinary perspective on artificial immune systems
    • Timmis J, Andrews P, Owen N (2008) An interdisciplinary perspective on artificial immune systems. Evol Intell 1:5-26
    • (2008) Evol Intell , vol.1 , pp. 5-26
    • Timmis, J.1    Andrews, P.2    Owen, N.3
  • 50
    • 0022652369 scopus 로고
    • Direct interactions between b and t lymphocytes bearing complementary Receptors
    • 10.1084/jem.163.1.189
    • JP Tite 1986 Direct interactions between b and t lymphocytes bearing complementary Receptors J Exp Med 163 189 202 10.1084/jem.163.1.189
    • (1986) J Exp Med , vol.163 , pp. 189-202
    • Tite, J.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.