-
1
-
-
53449086190
-
Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use
-
Acosta-Martínez V., Dowd S., Sun Y., Allen V. Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use. Soil Biology and Biochemistry 2008, 40:2762-2770.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2762-2770
-
-
Acosta-Martínez, V.1
Dowd, S.2
Sun, Y.3
Allen, V.4
-
2
-
-
49449087111
-
Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity
-
Birkhofer K., Bezemer T.M., Bloem J., Bonkowski M., Christensen S., Dubois D., Ekelund F., Fliessbach A., Gunst L., Hedlund K., Mader P., Mikola J., Robin C., Setala H., Tatin-Froux F., Van der Putten W.H., Scheu S. Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity. Soil Biology and Biochemistry 2008, 40:2297-2308.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2297-2308
-
-
Birkhofer, K.1
Bezemer, T.M.2
Bloem, J.3
Bonkowski, M.4
Christensen, S.5
Dubois, D.6
Ekelund, F.7
Fliessbach, A.8
Gunst, L.9
Hedlund, K.10
Mader, P.11
Mikola, J.12
Robin, C.13
Setala, H.14
Tatin-Froux, F.15
Van der Putten, W.H.16
Scheu, S.17
-
3
-
-
33745357685
-
Root controls on soil microbial community structure in forest soils
-
Brant J.B., Myrold D.D., Sulzman E.W. Root controls on soil microbial community structure in forest soils. Oecologia 2006, 148:650-659.
-
(2006)
Oecologia
, vol.148
, pp. 650-659
-
-
Brant, J.B.1
Myrold, D.D.2
Sulzman, E.W.3
-
5
-
-
0031733317
-
Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
-
Buckley D.H., Graber J.R., Schmidt T.M. Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Applied and Environmental Microbiology 1998, 64:4333-4339.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 4333-4339
-
-
Buckley, D.H.1
Graber, J.R.2
Schmidt, T.M.3
-
6
-
-
67549086723
-
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland
-
Cruz-Martínez K., Suttle K.B., Brodie E.L., Power M.E., Andersen G.L., Banfield J.F. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME Journal 2009, 3:738-744.
-
(2009)
ISME Journal
, vol.3
, pp. 738-744
-
-
Cruz-Martínez, K.1
Suttle, K.B.2
Brodie, E.L.3
Power, M.E.4
Andersen, G.L.5
Banfield, J.F.6
-
7
-
-
33750936639
-
Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil
-
Enwall K., Nyberg K., Bertilsson S., Cederlund H., Stenstrom J., Hallin S. Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil. Soil Biology and Biochemistry 2007, 39:106-115.
-
(2007)
Soil Biology and Biochemistry
, vol.39
, pp. 106-115
-
-
Enwall, K.1
Nyberg, K.2
Bertilsson, S.3
Cederlund, H.4
Stenstrom, J.5
Hallin, S.6
-
8
-
-
34250004874
-
Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations
-
Esperschuetz J., Gattinger A., Mader P., Schloter M., Fliessbach A. Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiology Ecology 2007, 61:26-37.
-
(2007)
FEMS Microbiology Ecology
, vol.61
, pp. 26-37
-
-
Esperschuetz, J.1
Gattinger, A.2
Mader, P.3
Schloter, M.4
Fliessbach, A.5
-
10
-
-
33947236971
-
Toward an ecological classification of soil bacteria
-
Fierer N., Bradford M.A., Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
-
(2007)
Ecology
, vol.88
, pp. 1354-1364
-
-
Fierer, N.1
Bradford, M.A.2
Jackson, R.B.3
-
11
-
-
22144470189
-
Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
-
Fierer N., Jackson J.A., Vilgalys R., Jackson R.B. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Applied and Environmental Microbiology 2005, 71:4117-4120.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 4117-4120
-
-
Fierer, N.1
Jackson, J.A.2
Vilgalys, R.3
Jackson, R.B.4
-
12
-
-
67349287510
-
Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
-
Hallin S., Jones C.M., Schloter M., Philippot L. Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME Journal 2009, 3:597-605.
-
(2009)
ISME Journal
, vol.3
, pp. 597-605
-
-
Hallin, S.1
Jones, C.M.2
Schloter, M.3
Philippot, L.4
-
13
-
-
52149108703
-
Soil organic matter and microbial community structure in set-aside and intensively managed arable soils in NE-Saxony, Germany
-
Hamer U., MakesChin F., Stadler J., Klotz S. Soil organic matter and microbial community structure in set-aside and intensively managed arable soils in NE-Saxony, Germany. Applied Soil Ecology 2008, 40:465-475.
-
(2008)
Applied Soil Ecology
, vol.40
, pp. 465-475
-
-
Hamer, U.1
MakesChin, F.2
Stadler, J.3
Klotz, S.4
-
14
-
-
40549127742
-
Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile
-
Hansel C.M., Fendorf S., Jardine P.M., Francis C.A. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Applied and Environmental Microbiology 2008, 74:1620-1633.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 1620-1633
-
-
Hansel, C.M.1
Fendorf, S.2
Jardine, P.M.3
Francis, C.A.4
-
15
-
-
56649085249
-
Environmental and anthropogenic controls over bacterial communities in wetland soils
-
Hartman W.H., Richardson C.J., Vilgalys R., Bruland G.L. Environmental and anthropogenic controls over bacterial communities in wetland soils. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:17842-17847.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 17842-17847
-
-
Hartman, W.H.1
Richardson, C.J.2
Vilgalys, R.3
Bruland, G.L.4
-
16
-
-
33746869300
-
Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities
-
Hartmann M., Fliessbach A., Oberholzer H.R., Widmer F. Ranking the magnitude of crop and farming system effects on soil microbial biomass and genetic structure of bacterial communities. FEMS Microbiology Ecology 2006, 57:378-388.
-
(2006)
FEMS Microbiology Ecology
, vol.57
, pp. 378-388
-
-
Hartmann, M.1
Fliessbach, A.2
Oberholzer, H.R.3
Widmer, F.4
-
17
-
-
33747335398
-
Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
-
Henry S., Bru D., Stres B., Hallet S., Philippot L. Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Applied and Environmental Microbiology 2006, 72:5181-5189.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5181-5189
-
-
Henry, S.1
Bru, D.2
Stres, B.3
Hallet, S.4
Philippot, L.5
-
18
-
-
33644952722
-
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
-
Janssen P.H. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Applied and Environmental Microbiology 2006, 72:1719-1728.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 1719-1728
-
-
Janssen, P.H.1
-
19
-
-
63349105158
-
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
-
Jones R.T., Robeson M.S., Lauber C.L., Hamady M., Knight R., Fierer N. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME Journal 2009, 3:442-453.
-
(2009)
ISME Journal
, vol.3
, pp. 442-453
-
-
Jones, R.T.1
Robeson, M.S.2
Lauber, C.L.3
Hamady, M.4
Knight, R.5
Fierer, N.6
-
20
-
-
0032982983
-
Response of soil microbial biomass, urease and xylanase within particle size fractions to long-term soil management
-
Kandeler E., Stemmer M., Klimanek E.M. Response of soil microbial biomass, urease and xylanase within particle size fractions to long-term soil management. Soil Biology and Biochemistry 1999, 31:261-273.
-
(1999)
Soil Biology and Biochemistry
, vol.31
, pp. 261-273
-
-
Kandeler, E.1
Stemmer, M.2
Klimanek, E.M.3
-
21
-
-
34249106390
-
High abundance of Crenarchaeota in a temperate acidic forest soil
-
Kemnitz D., Kolb S., Conrad R. High abundance of Crenarchaeota in a temperate acidic forest soil. FEMS Microbiology Ecology 2007, 60:442-448.
-
(2007)
FEMS Microbiology Ecology
, vol.60
, pp. 442-448
-
-
Kemnitz, D.1
Kolb, S.2
Conrad, R.3
-
22
-
-
0003574752
-
The Ultuna long-term soil organic matter experiment
-
Uppsala, Sweden, 1956-1991
-
Kirchmann, H., Persson, J., Carlgren, K., 1994. The Ultuna long-term soil organic matter experiment, 1956-1991. Reports and dissertations 17. Swedish University of Agricultural Sciences, Uppsala, Sweden.
-
(1994)
Reports and dissertations 17. Swedish University of Agricultural Sciences
-
-
Kirchmann, H.1
Persson, J.2
Carlgren, K.3
-
23
-
-
0035173421
-
Rrndb: the ribosomal RNA operon copy number database
-
Klappenbach J.A., Saxman P.R., Cole J.R., Scmidt T.M. rrndb: the ribosomal RNA operon copy number database. Nucleic Acids Research 2001, 29:181-184.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 181-184
-
-
Klappenbach, J.A.1
Saxman, P.R.2
Cole, J.R.3
Scmidt, T.M.4
-
24
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
25
-
-
2442709377
-
Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains
-
Lipson D.A., Schmidt S.K. Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains. Applied and Environmental Microbiology 2004, 70:2867-2879.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 2867-2879
-
-
Lipson, D.A.1
Schmidt, S.K.2
-
26
-
-
2342501363
-
Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR
-
López-Gutiérrez J.C., Henry S., Hallet S., Martin-Laurent F., Catroux G., Philippot L. Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR. Journal of Microbiological Methods 2004, 57:399-407.
-
(2004)
Journal of Microbiological Methods
, vol.57
, pp. 399-407
-
-
López-Gutiérrez, J.C.1
Henry, S.2
Hallet, S.3
Martin-Laurent, F.4
Catroux, G.5
Philippot, L.6
-
27
-
-
0037341253
-
Structure and function of the soil microbial community in a long-term fertilizer experiment
-
Marschner P., Kandeler E., Marschner B. Structure and function of the soil microbial community in a long-term fertilizer experiment. Soil Biology and Biochemistry 2003, 35:453-461.
-
(2003)
Soil Biology and Biochemistry
, vol.35
, pp. 453-461
-
-
Marschner, P.1
Kandeler, E.2
Marschner, B.3
-
28
-
-
52949144888
-
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
-
Nemergut D.R., Townsend A.R., Sattin S.R., Freeman K.R., Fierer N., Neff J.C., Bowman W.D., Schadt C.W., Weintraub M.N., Schmidt S.K. The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environmental Microbiology 2008, 10:3093-3105.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 3093-3105
-
-
Nemergut, D.R.1
Townsend, A.R.2
Sattin, S.R.3
Freeman, K.R.4
Fierer, N.5
Neff, J.C.6
Bowman, W.D.7
Schadt, C.W.8
Weintraub, M.N.9
Schmidt, S.K.10
-
29
-
-
0042853314
-
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
-
Ochsenreiter T., Selezi D., Quaiser A., Bonch-Osmolovskaya L., Schleper C. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environmental Microbiology 2003, 5:787-797.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 787-797
-
-
Ochsenreiter, T.1
Selezi, D.2
Quaiser, A.3
Bonch-Osmolovskaya, L.4
Schleper, C.5
-
30
-
-
0034965971
-
Soil microbial community responses to dairy manure or ammonium nitrate applications
-
Peacock A.D., Mullen M.D., Ringelberg D.B., Tyler D.D., Hedrick D.B., Gale P.M., White D.C. Soil microbial community responses to dairy manure or ammonium nitrate applications. Soil Biology and Biochemistry 2001, 33:1011-1019.
-
(2001)
Soil Biology and Biochemistry
, vol.33
, pp. 1011-1019
-
-
Peacock, A.D.1
Mullen, M.D.2
Ringelberg, D.B.3
Tyler, D.D.4
Hedrick, D.B.5
Gale, P.M.6
White, D.C.7
-
31
-
-
71249135203
-
Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree
-
Philippot L., Bru D., Saby N.P.A., Cuhel J., Arrouays D., Simek M., Hallin S. Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree. Environmental Microbiology 2009, 11:3096-3104.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 3096-3104
-
-
Philippot, L.1
Bru, D.2
Saby, N.P.A.3
Cuhel, J.4
Arrouays, D.5
Simek, M.6
Hallin, S.7
-
32
-
-
77953619002
-
The ecological coherence of high bacterial taxonomixal ranks
-
Philippot L., Andersson S.G.E., Battin T.J., Prosser J.I., Schimel J.P., Whitman W.B., Hallin S. The ecological coherence of high bacterial taxonomixal ranks. Nature Reviews Microbiology 2010, 8:523-529.
-
(2010)
Nature Reviews Microbiology
, vol.8
, pp. 523-529
-
-
Philippot, L.1
Andersson, S.G.E.2
Battin, T.J.3
Prosser, J.I.4
Schimel, J.P.5
Whitman, W.B.6
Hallin, S.7
-
33
-
-
52149091902
-
Microbial community response to transition from conventional to conservation tillage in cotton fields
-
Simmons B.L., Coleman D.C. Microbial community response to transition from conventional to conservation tillage in cotton fields. Applied Soil Ecology 2008, 40:518-528.
-
(2008)
Applied Soil Ecology
, vol.40
, pp. 518-528
-
-
Simmons, B.L.1
Coleman, D.C.2
-
34
-
-
77950560411
-
Vegetation affects the relative abundance of dominant soil bacterial taxa and soil respiration rates in an upland grassland soil
-
Thomson B.C., Ostle N., McNamara N., Bailey M.J., Whiteley A.S., Griffiths R.I. Vegetation affects the relative abundance of dominant soil bacterial taxa and soil respiration rates in an upland grassland soil. Plant Microbe Interactions 2010, 59:335-343.
-
(2010)
Plant Microbe Interactions
, vol.59
, pp. 335-343
-
-
Thomson, B.C.1
Ostle, N.2
McNamara, N.3
Bailey, M.J.4
Whiteley, A.S.5
Griffiths, R.I.6
-
35
-
-
37549024239
-
Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils
-
Wakelin S.A., Macdonald L.M., Rogers S.L., Gregg A.L., Bolger T.P., Baldock J.A. Habitat selective factors influencing the structural composition and functional capacity of microbial communities in agricultural soils. Soil Biology and Biochemistry 2008, 40:803-813.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 803-813
-
-
Wakelin, S.A.1
Macdonald, L.M.2
Rogers, S.L.3
Gregg, A.L.4
Bolger, T.P.5
Baldock, J.A.6
-
36
-
-
33846230461
-
Bacterial and fungal community structure in Arctic tundra tussock and shrub soils
-
Wallenstein M.D., McMahon S., Schimel J. Bacterial and fungal community structure in Arctic tundra tussock and shrub soils. FEMS Microbiology Ecology 2007, 59:428-435.
-
(2007)
FEMS Microbiology Ecology
, vol.59
, pp. 428-435
-
-
Wallenstein, M.D.1
McMahon, S.2
Schimel, J.3
-
37
-
-
27944442453
-
Effects of organic versus conventional management on chemical and biological parameters in agricultural soils
-
van Diepeningen A.D., de Vos O.J., Korthals G.W., van Bruggen A.H.C. Effects of organic versus conventional management on chemical and biological parameters in agricultural soils. Applied Soil Ecology 2006, 31:120-135.
-
(2006)
Applied Soil Ecology
, vol.31
, pp. 120-135
-
-
van Diepeningen, A.D.1
de Vos, O.J.2
Korthals, G.W.3
van Bruggen, A.H.C.4
-
38
-
-
63849207489
-
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
-
Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M., DeBoy Robert T., Detter J.C., Dodson R.J., Durkin S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C., Zafar N., Zhou L., Kuske C.R. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology 2009, 75:2046-2056.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 2046-2056
-
-
Ward, N.L.1
Challacombe, J.F.2
Janssen, P.H.3
Henrissat, B.4
Coutinho, P.M.5
Wu, M.6
Xie, G.7
Haft, D.H.8
Sait, M.9
Badger, J.10
Barabote, R.D.11
Bradley, B.12
Brettin, T.S.13
Brinkac, L.M.14
Bruce, D.15
Creasy, T.16
Daugherty, S.C.17
Davidsen, T.M.18
DeBoy, R.T.19
Detter, J.C.20
Dodson, R.J.21
Durkin, S.22
Ganapathy, A.23
Gwinn-Giglio, M.24
Han, C.S.25
Khouri, H.26
Kiss, H.27
Kothari, S.P.28
Madupu, R.29
Nelson, K.E.30
Nelson, W.C.31
Paulsen, I.32
Penn, K.33
Ren, Q.34
Rosovitz, M.J.35
Selengut, J.D.36
Shrivastava, S.37
Sullivan, S.A.38
Tapia, R.39
Thompson, L.S.40
Watkins, K.L.41
Yang, Q.42
Yu, C.43
Zafar, N.44
Zhou, L.45
Kuske, C.R.46
more..
-
39
-
-
0032740691
-
Relative abundance and evenness patterns along diversity and biomass gradients
-
Weiher E., Keddy P.A. Relative abundance and evenness patterns along diversity and biomass gradients. Oikos 1999, 87:355-361.
-
(1999)
Oikos
, vol.87
, pp. 355-361
-
-
Weiher, E.1
Keddy, P.A.2
-
40
-
-
60749084669
-
Diversity rankings among bacterial lineages in soil
-
Youssef N.H., Elshahed M.S. Diversity rankings among bacterial lineages in soil. ISME Journal 2009, 3:305-313.
-
(2009)
ISME Journal
, vol.3
, pp. 305-313
-
-
Youssef, N.H.1
Elshahed, M.S.2
|