Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: Evidence for interserotypic recombination

Virology Journal

Volumn 7, Issue , 2010, Pages

  Balinda, Sheila N ^a   Siegismund, Hans R ^b   Muwanika, Vincent B ^a   Sangula, Abraham K ^a,e   Masembe, Charles ^a   Ayebazibwe, Chrisostom ^d   Normann, Preben ^c   Belsham, Graham J ^c  

^a MAKERERE UNIVERSITY   (Uganda)

^b Department of Biology ^*  (Denmark)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d Ministry of Agriculture Animal Industry and Fisheries   (Uganda)

^e Wellcome Inst Res Foot and Mouth Dis   (Kenya)

Author keywords

[No Author keywords available]

Indexed keywords

POLYPROTEIN; PROTEIN P2; PROTEINASE; RNA; VIRUS PROTEIN; VIRUS RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AFRICA; ARTICLE; CELL CULTURE; COMPARATIVE STUDY; DNA SYNTHESIS; FOOT AND MOUTH DISEASE; FOOT AND MOUTH DISEASE VIRUS; KENYA; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; RNA SEQUENCE; SEQUENCE ANALYSIS; SEROTYPE; UGANDA; VIRUS CAPSID; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; CELL LINE; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; HAMSTER; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; VIRUS CULTURE;

FOOT-AND-MOUTH DISEASE VIRUS; MIRIDAE;

ANIMALS; CELL LINE; CLUSTER ANALYSIS; CRICETINAE; EVOLUTION, MOLECULAR; FOOT-AND-MOUTH DISEASE VIRUS; KENYA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; POLYPROTEINS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; UGANDA; VIRAL PROTEINS; VIRUS CULTIVATION;

EID: 77955789587     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-7-199     Document Type: Article

References (29)

1. Translation and Replication of FMDV RNA. In 'Foot and mouth disease virus'. GJ Belsham, Curr Top Microbiol Immunol 2005 288 43 70 full-text 15648174
2. Foot-and-mouth disease. JAW Coetzer GR Thomsen RC Tustin NPJ Kriek, Infectious Diseases of Livestock with Special Reference to Southern Africa Cape Town: Oxford University Press 1994
3. Foot-and-mouth disease virus populations are quasispecies. E Domingo C Escarmsa MA Martinez E Martinez-Salas MG Mateu, Curr Top Microbiol Immunol 1992 176 33 47 1318185
4. Foot-and-Mouth disease. MJ Grubman B Baxt, Clin Microbiol Rev 2004 17 465 493 10.1128/CMR.17.2.465-493.2004 15084510
5. Molecular epidemiology of foot-and-mouth disease virus. NJ Knowles AR Samuel, Virus Res 2003 91 65 80 10.1016/S0168-1702(02)00260-5 12527438
6. Comparative Genomics of Foot and Mouth Disease. C Carrillo ER Tulman G Delhon Z Lu A Carreno A Vagnozzi GF Kutish DL Rock, J Virol 2005 70 6487 6504 10.1128/JVI.79.10.6487-6504.2005 (Pubitemid 40617252)
7. Foot and mouth disease virus: Exploring pathways towards virus extinction. E Domingo N Pariente A Airaksinen C Gonzalez-Lopez S S M Herrera A Grande-Perez PR Lowenstein SC Manrubia E Lazaro C Escarm'sa, Curr Top Microbiol Immunol 2005 288 149 173 full-text 15648178
8. Mosaic structure of foot-and-mouth disease virus genomes. AL Jackson H O'Neill F Maree B Blignaut C Carillo L Rodriguez DT Haydon, J Gen Virol 2007 88 487 492 10.1099/vir.0.82555-0 17251567
9. Review of the status and control of foot and mouth disease in sub-saharan Africa. W Vosloo ADS Bastos O Sangare SK Hargreaves GR Thomson, Rev Sci Tech Off Int Epiz 2002 21 437 449
10. Molecular epidemiology of SAT3-type foot-and-mouth disease. AD Bastos EC Anderson RG Bengis DF Keet HK Winterbach T GR, Virus Genes 2003 27 283 290 10.1023/A:1026352000959 14618089
11. Genetic characterization of foot-and-mouth disease viruses, Ethiopia, 1981-2007. G Ayelet M Mahapatra E Gelaye BG Egziabher T Rufeal M Sahle NP Ferris J Wadsworth GH Hutchings NJ Knowles, Emerging Infectious Diseases 2009 15 1409 1417 10.3201/eid1509.090091 19788808
12. Molecular characterization of SAT 2 foot-and-mouth diseasevirus from post-outbreak slaughtered animals: implications for disease control in Uganda. SN Balinda GJ Belsham C Masembe AK Sangula HR Siegismund, Epidemiol Infect 2009 1 7
13. Multiple sites of recombination within the RNA genome of foot-andmouth disease virus. AM King D McCahon K Saunders JW Newman WR Slade, Virus Res 1985 3 373 384 10.1016/0168-1702(85)90437-X 3000107
14. Isolation and biochemical characterization of intertypic recombinants of foot-and-mouth disease virus. D McCahon AM King DS Roe WR Slade JW Newman AM Cleary, Virus Res 1985 3 87 100 10.1016/0168-1702(85)90044-9 2992184
15. Crossover regions in foot-and-mouth disease virus (FMDV) recombinants correspond to regions of high local secondary structure. V Wilson P Taylor U Desselberger, Arch of Virol 1988 102 131 139 10.1007/BF01315570
16. Natural transmission of foot-and-mouth disease from African buffalo(Syncerus caffer) to cattle in a wildlife area of Zimbabwe. P Dawe FO Flanagan RL Madekurozwa KJ Sorenson EC Anderson C Foggin NP Ferris NJ Knowles, Vet Rec 1994 134 230 232 8197679
17. Foot-and-mouth disease. GR Thomson, Infectious Diseases of Livestock with Special Reference to Southern Africa Cape town: Oxford University Press 1994
18. Natural transmission of foot-and-mouth disease virus between African buffalo (Syncerus caffer) and impala (Aerpyceros melampus) in Kruger National Park, South Africa. ADS Bastos CI Boshoff DF Keet RG Bengis GR Thomson, Epidemiol Infect 2000 124 591 598 10.1017/S0950268899004008 10982083
19. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucl Acids Res 2004 32 1792 1797 10.1093/nar/gkh340 15034147
20. Geneious v. 4.7. http://www.geneious.com
21. DL Swofford, PAUP* Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.0 Sunderland: Sinauer Associates 2001
22. Bayesian phylogenetic analysis of combined data. JA Nylander F Ronquist JP Huelsenbeck JL Nieves-Aldrey, Syst Biol 2004 53 47 67 10.1080/ 10635150490264699 14965900
23. MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
24. SimPlot for Windows 95, version 2.5. http://sray.med.som.jhmi.edu/ SCRoftware/simplot/
25. Genetic characterisation of the recent foot-and-mouth disease virus subtype A/IRN/2005. J Klein M Hussain P Normann M Afzal S Alexandersen, Virology Journal 2007 4 122 10.1186/1743-422X-4-122 18001482
26. Comparisons of the complete genomes of Asian, African and European isolates of a recentfoot-and-mouth disease virus type O pandemic strain (PanAsia). PW Mason JM Pacheco QZ Zhao NJ Knowles, J Gen Virol 2003 84 1583 1593 10.1099/vir.0.18669-0 12771429
27. Genetic recombination in wild-type poliovirus. G Dahourou S Guillot O Le Gall R Crainic, J Gen Virol 2002 83 3103 3110 12466487
28. Evidence for frequent recombination within species Human enterovirus B based on complete genomic sequences of all thirty-seven serotypes. MS Oberste K Maher PM A, J Virol 2004 78 855 867 10.1128/JVI.78.2.855-867.2004 14694117
29. Recombination patterns in Aphthoviruses mirror those found in other picornaviruses. L Heath E van der Walt A Varsani DP Martin, J Virol 2006 80 11827 11832 10.1128/JVI.01100-06 16971423