Determination of the G and P types of previously nontypeable rotavirus strains from the african rotavirus network, 1996-2004: Identification of unusual G types

Journal of Infectious Diseases

Volumn 202, Issue SUPPL. 1, 2010, Pages

  Esona, Mathew Dioh ^a,m   Steele, Duncan ^b   Kerin, Tara ^a   Armah, George ^d   Peenze, Ina ^e   Geyer, Annelise ^e   Page, Nicola ^f   Nyangao, James ^g   Agbaya, Veronique Akran ^h   Trabelsi, Abdelhalim ⁱ   Tsion, Bizuneh ^j   Aminu, Maryam ^k   Sebunya, Theresia ^l   Dewar, John ^e   Glass, Roger ^c   Gentsch, Jon ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b PATH   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

^d Noguchi Memorial Research Institute Accra Ghana   (Ghana)

^e UNIVERSITY OF LIMPOPO   (South Africa)

^f National Institute for Communicable Disease   (South Africa)

^g KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^h Institut Pasteur de Coted'Ivoire   (Kenya)

ⁱ SAHLOUL UNIVERSITY HOSPITAL   (Tunisia)

^j Ethiopian Institute of Virology   (Ethiopia)

^k AHMADU BELLO UNIVERSITY   (Nigeria)

^l UNIVERSITY OF BOTSWANA   (Botswana)

^m NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHILD; GENE FREQUENCY; GENETIC REASSORTMENT; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SEROTYPE; VIRUS IDENTIFICATION; VIRUS STRAIN; VIRUS TYPING;

AFRICA; GENE EXPRESSION REGULATION, VIRAL; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEROTYPING; VIRAL PROTEINS;

EID: 77955706498     PISSN: 00221899     EISSN: None     Source Type: Journal    
DOI: 10.1086/653552     Document Type: Article

References (47)

1. Parashar UD, Gibson CJ, Bresee JS, Glass RI. Rotavirus and severe childhood diarrhea. Emerg Infect Dis 2006; 12:304-306.
2. Estes ME, Kapikian AZ. Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, et al, eds. Fields virology. 5th ed. Vol 2. Philadelphia, PA: Lippincott Williams & Wilkins, 2007:1917-1974.
3. Beards GM, Campbell AD, Cottrell NR, et al. Enzyme-linked immunosorbent assays based on polyclonal and monoclonal-antibodies for rotavirus detection. J Clin Microbiol 1984; 19:248-254.
4. Coulson BS, Unicomb LE, Pitson GA, Bishop RF. Simple and specific enzyme-immunoassay using monoclonal-antibodies for serotyping human rotaviruses. J Clin Microbiol 1987; 25:509-515.
5. Taniguchi K, Urasawa T, Morita Y, Greenberg HB, Urasawa S. Direct serotyping of human rotavirus in stools by an enzyme-linked-immunosorbent- assay using serotype 1-specific, 2-specific, 3-specific, and 4- specific monoclonal-antibodies to VP7. J Infect Dis 1987; 155: 1159-1166.
6. Das BK, Gentsch JR, Cicirello HG, et al. Characterization of rotavirus strains from newborns in New-Delhi, India. J Clin Microbiol 1994; 32:1820-1822.
7. Gentsch JR, Glass RI,Woods P, et al. Identification of group-a rotavirus gene-4 types by polymerase chain-reaction. J Clin Microbiol 1992; 30: 1365-1373.
8. Gouvea V, Glass RI, Woods P, et al. Polymerase chain-reaction amplification and typing of rotavirus nucleic-acid from stool specimens. J Clin Microbiol 1990; 28:276-282.
9. Martella V, Ciarlet M, Banyai K, et al. Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain. Virology 2006; 346:301-311.
10. Gentsch JR, Laird AR, Bielfelt B, et al. Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J Infect Dis 2005; 192:S146-S159.
11. Desselberger U, Iturriza-Gomara M, Gray JJ. Rotavirus epidemiology and surveillance. Novartis Found Symp 2001; 238:125-152.
12. Santos N, Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Medical Virol 2005; 15:29-56.
13. Cunliffe NA, Gondwe JS, Broadhead RL, et al. Rotavirus G and P types in children with acute diarrhea in Blantyre, Malawi, from 1997 to 1998: predominance of novel P[6]G8 strains. J Med Virol 1999; 57:308-312.
14. Gouvea V, Decastro L, Timenetsky MD, Greenberg H, Santos N. Rotavirus serotype-G5 associated with diarrhea in Brazilian children. J Clin Microbiol 1994; 32:1408-1409.
15. Iturriza Gomara M, Kang G, Mammen A, et al. Characterization of G10P[11] rotaviruses causing acute gastroenteritis in neonates and infants in Vellore, India. J Clin Microbiol 2004; 42:2541-2547.
16. Banyai K, Gentsch JR, Griffin DD, Holmes JL, Glass RI, Szucs G. Genetic variability among serotype G6 human rotaviruses: identification of a novel lineage isolated in Hungary. J Med Virol 2003; 71: 124-134.
17. Coulson BS, Gentsch JR, Das BK, Bhan MK, Glass RI. Comparison of enzyme immunoassay and reverse transcriptase PCR for identification of serotype G9 rotaviruses. J Clin Microbiol 1999; 37:3187-3193.
18. Urasawa S, Urasawa T, Taniguchi K, et al. Survey of human rotavirus serotypes in different locales in Japan by enzyme-linked immunosorbent- assay with monoclonal-antibodies. J Infect Dis 1989; 160:44-51.
19. Coulson BS. Typing of human rotavirus VP4 by an enzyme-immunoassay using monoclonal-antibodies. J Clin Microbiol 1993; 31:1-8.
20. Padillanoriega L, Wernereckert R, Mackow ER, et al. Serologic analysis of human rotavirus serotypes P1A and P2 by using monoclonal-antibodies. J Clin Microbiol 1993; 31:622-628.
21. Adah MI, Rohwedder A, Olaleyle OD, Werchau H. Nigerian rotavirus serotype GS could not be typed by PCR due to nucleotide mutation at the 3-end of the primer binding site. Arch Virol 1997; 142:1881-1887.
22. Banyai K, Forgach P, Erdelyi K, et al. Identification of the novel lapine rotavirus genotype P[22] from an outbreak of enteritis in a Hungarian rabbitry. Virus Res 2005; 113:73-80.
23. Cunliffe NA, Gondwe JS, Graham SM, et al. Rotavirus strain diversity in Blantyre, Malawi, from 1997 to 1999. J Clin Microbiol 2001; 39: 836-843.
24. Iturriza-Gomara M, Green J, Brown DWG, Desselberger U, Gray JJ. Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping. J Clin Microbiol 2000; 38: 898-901.
25. Cooney MA, Gorrell RJ, Palombo EA. Characterisation and phylogenetic analysis of the VP7 proteins of serotype G6 and G8 human rotaviruses. J Med Microbiol 2001; 50:462-467.
26. Iturriza-Gomara M, Kang G, Gray J. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J Clin Virol 2004; 31:259-265.
27. Santos N, Lima RCC, Pereira CFA, Gouvea V. Detection of rotavirus types G8 and G10 among Brazilian children with diarrhea. J Clin Microbiol 1998; 36:2727-2729.
28. Rahman M, Matthijnssens J, Nahar S, et al. Characterization of a novel P[25],G11 human group A rotavirus. J Clin Microbiol 2005; 43: 3208-3212.
29. Simmonds MK, Armah G, Asmah R, et al. New oligonucleotide primers for P-typing of rotavirus strains: Strategies for typing previously untypeable strains. J Clin Virol 2008; 42:368-373.
30. Glass RI, Parashar UD, Bresee JS, et al. Rotavirus vaccines: current prospects and future challenges. Lancet 2006; 368:323-332.
31. Vesikari T, Karvonen A, Prymula R, et al. Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: randomised, double-blind controlled study. Lancet 2007; 370:1757-1763.
32. Steele AD, Ivanoff B. Rotavirus strains circulating in Africa during 1996-1999: emergence of G9 strains and P[6] strains. African Rotavirus Network. Vaccine 2003; 21:361-367.
33. Shaw RD, Stonerma DL, Estes MK, Greenberg HB. Specific enzymelinked immunoassay for rotavirus serotype-1 and serotype-3. J Clin Microbiol 1985; 22:286-291.
34. Gentsch JR, Glass RI,Woods P, et al. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 1992; 30: 1365-1373.
35. Freeman MM, Kerin T, Hull J, McCaustland K, Gentsch J. Enhancement of detection and quantification of rotavirus in stool using a modified real-time RT-PCR assay. J Med Virol 2008; 80:1489-1496.
36. Fischer TK, Steinsland H, Molbak K, et al. Genotype profiles of rotavirus strains from children in a suburban community in Guinea- Bissau, Western Africa. J Clin Microbiol 2000; 38:264-267.
37. Devereux J, Haeberli P, Smithies O. A Comprehensive set of sequenceanalysis programs for the VAX. Nucleic Acids Res 1984; 12:387-395.
38. Leite JPG, Alfieri AA, Woods PA, Glass RI, Gentsch JR. Rotavirus G and P types circulating in Brazil: characterization by RT-PCR, probe hybridization, and sequence analysis. Arch Virol 1996; 141:2365-2374.
39. Fischer TK, Page NA, Griffin DD, et al. Characterization of incompletely typed rotavirus strains from Guinea-Bissau: identification of G8 and G9 types and a high frequency of mixed infections. Virology 2003; 311:125-133.
40. Rahman M, Sultana R, Podder G, et al. Typing of human rotaviruses: nucleotide mismatches between the VP7 gene and primer are associated with genotyping failure. Virol J 2005; 2:5.
41. Kang JO, Kilgore P, Kim JS, et al. Molecular epidemiological profile of rotavirus in South Korea, July 2002 through June 2003: emergence of G4P[6] and G9P[8] strains. J Infect Dis 2005; 192:S57-S63.
42. Jain V, Das BK, Bhan MK, Glass RI, Gentsch JR. Great diversity of group A rotavirus strains and high prevalence of mixed rotavirus infections in India. J Clin Microbiol 2001; 39:3524-3529.
43. Ahmed MU, Urasawa S, Taniguchi K, et al. Analysis of human rotavirus strains prevailing in Bangladesh in relation to nationwide floods brought by the 1988 monsoon. J Clin Microbiol 1991; 29:2273-2279.
44. Doan LTP, Okitsu S, Nishio O, Pham DT, Nguyen DH, Ushijima H. Epidemiological features of rotavirus infection among hospitalized children with gastroenteritis in Ho Chi Minh City, Vietnam. J Med Virol 2003; 69:588-594.
45. Santos N, Soares CC, Volotao EM, Albuquerque MCM, Hoshino Y. Surveillance of rotavirus strains in Rio de Janeiro, Brazil, from 1997 to 1999. J Clin Microbiol 2003; 41:3399-3402.
46. Gouvea V, Santos N, Timenetsky M. Identification of bovine and porcine rotavirus-G types by PCR. J Clin Microbiol 1994; 32:1338-1340.
47. Esona MD, Armah GE, Geyer A, Steele AD. Detection of an unusual human rotavirus strain with G5P[8] specificity in a Cameroonian child with diarrhea. J Clin Microbiol 2004; 42:441-444.