Influence of hydrological conditions on the Escherichia coli population structure in the water of a creek on a rural watershed

BMC Microbiology

Volumn 10, Issue , 2010, Pages

  Ratajczak, Mehdy ^a   Laroche, Emilie ^a   Berthe, Thierry ^a   Clermont, Olivier ^b   Pawlak, Barbara ^a   Denamur, Erick ^b   Petit, Fabienne ^a  

^a Laboratoire Morphodynamique Continentale et Cotiere   (France)

^b UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL COUNT; BACTERIAL GENE; BACTERIUM CONTAMINATION; BACTERIUM ISOLATE; ESCHERICHIA COLI; HLY GENE; HYDROLOGY; NONHUMAN; POPULATION STRUCTURE; WATERSHED; ANTIBIOTIC RESISTANCE; CLASSIFICATION; CLIMATE CHANGE; DRUG EFFECT; ECOSYSTEM; FRANCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; SEASON;

ANIMALIA; BACTERIA (MICROORGANISMS); BOS; ESCHERICHIA COLI; PHYLO; VERTEBRATA;

ANTIINFECTIVE AGENT; ESCHERICHIA COLI PROTEIN; HEMOLYSIN;

ANTI-BACTERIAL AGENTS; CLIMATE CHANGE; DRUG RESISTANCE, BACTERIAL; ECOSYSTEM; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FRANCE; HEMOLYSIN PROTEINS; PHYLOGENY; SEASONS; WATER MICROBIOLOGY;

EID: 77955694041     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-10-222     Document Type: Article

References (44)

1. Review of epidemiological studies on health effects from exposure to recreational water. A Prüss, I J Epidemiol 1998 27 1 9 10.1093/ije/27.1.1
2. Using geographic information systems and regression analysis to evaluate relationships between land use and fecal coliform bacterial pollution. H Kelsey DE Porter G Scott M Neet D White, J Exp Mar Biol Ecol 2004 298 197 209 10.1016/S0022-0981(03)00359-9
3. Numbers and transported state of Escherichia coli in runoff direct from fresh cowpats under simulated rainfall. RW Muirhead RP Collins PJ Bremer, Lett Appl Microbiol 2006 42 83 87 10.1111/j.1472-765X.2005.01823.x 16441369
4. Rainfall timing and frequency influence on leaching of Escherichia coli RS2G through soil following manure application. R Saini LJ Halverson JC Lorimor, J Environ Qual 2003 32 1865 1872 10.2134/jeq2003.1865 14535331
5. Predicting likelihood of gastroenteritis from sea bathing: results from randomised exposure. D Kay JM Fleisher RL Salmon F Jones MD Wyer AF Godfree Z Zelenauch-Jacquotte R Shore, Lancet 1994 344 905 909 10.1016/S0140-6736(94) 92267-5 7934344
6. Risk of gastroenteritis among triathletes in relation to faecal pollution of fresh waters. IA Van-Asperen G Medema MW Borgdorff MJW Sprenger AH Havelaar, I J Epidemiol 1998 27 309 315 10.1093/ije/27.2.309
7. Epidemiological determination of disease risks from bathing. A Wiedenmann K Dietz P Krüger, Eberhard karls Universität Tübingen 2004 Final report
8. The indigenous gastrointestinal microflora. RD Berg, Trends Microbiol 1996 4 430 435 10.1016/0966-842X(96)10057-3 8950812
9. The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects. DM Gordon A Cowling, Microbiology 2003 149 3575 3586 10.1099/mic.0.26486-0 14663089
10. Inability of Escherichia coli to resuscitate from the viable but nonculturable state. I Arana M Orruno D Perez-Pascual C Seco A Muela I Barcina, FEMS Microbiol Ecol 2007 62 1 11 10.1111/j.1574-6941.2007.00362.x 17908096
11. Environmental controls on the fate of Escherichia coli in soil. M Habteselassie M Bischoff E Blume B Applegate B Reuhs S Brouder RF Turco, Wat Air Soil Pollut 2008 190 143 155 10.1007/s11270-007-9587-6
12. Survival of enteric bacteria in seawater. Y Rozen S Belkin, FEMS Microbiol Rev 2001 25 513 529 10.1111/j.1574-6976.2001.tb00589.x 11742689
13. Survival of Escherichia coli O157:H7 in private drinking water wells: influences of protozoan grazing and elevated copper concentrations. RRE Artz K Killham, FEMS Microbiol Lett 2002 216 117 122 10.1111/j.1574-6968.2002.tb11424.x 12423762
14. Population structure, persistence, and seasonality of autochthonous Escherichia coli in temperate, coastal forest soil from a Great Lakes watershed. MN Byappanahalli RL Whitman DA Shively MJ Sadowsky S Ishii, Environ Microbiol 2006 8 504 513 10.1111/j.1462-2920.2005.00916.x 16478456
15. Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. ST Walk EW Alm LM Calhoun JM Mladonicky TS Whittam, Environ Microbiol 2007 9 2274 2288 10.1111/j.1462-2920.2007.01341.x 17686024
16. Role of nonhost environments in the lifestyles of Salmonella and Escherichia coli. MD Winfield EA Groisman, Appl Environ Microbiol 2003 69 3687 3694 10.1128/AEM.69.7.3687-3694.2003 12839733
17. Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior watersheds. S Ishii WB Ksoll RE Hicks MJ Sadowsky, Appl Environ Microbiol 2006 72 612 621 10.1128/AEM.72.1.612-621.2006 16391098
18. Phenotypic and genotypic characterization of encapsulated Escherichia coli isolated from blooms in two Australian lakes. ML Power J Littlefield-Wyer DM Gordon DA Veal MB Slade, Environ Microbiol 2005 7 631 640 10.1111/j.1462-2920.2005.00729.x 15819845
19. Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the -D-glucuronidase gene. AH Farnleitner N Kreuzinger GG Kavka S Grillenberger J Rath RL Mach, Appl Environ Microbiol 2000 66 1340 1346 10.1128/AEM.66.4.1340-1346.2000 10742209
20. Sequence-based source tracking of Escherichia coli based on genetic diversity of -D-glucuronidase. JL Ram RP Ritchie J Fang FS Gonzales JP Selegean, J Environ Qual 2004 33 1024 1032 10.2134/jeq2004.1024 15224940
21. Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. PE Dombek LAK Johnson ST Zimmerley MJ Sadowsky, Appl Environ Microbiol 2000 66 2572 2577 10.1128/AEM.66.6.2572- 2577.2000 10831440
22. Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution. LAK Johnson MB Brown EA Carruthers JA Ferguson PE Dombek MJ Sadowsky, Appl Environ Microbiol 2004 70 4478 4485 10.1128/AEM.70.8.4478-4485.2004 15294775
23. Identification of fecal Escherichia coli from humans and animals by ribotyping. CA Carson BL Shear MR Ellersieck A Asfaw, Appl Environ Microbiol 2001 67 1503 1507 10.1128/AEM.67.4.1503-1507.2001 11282597
24. Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: use in predicting the source of fecal contamination in subtropical waters. VJ Harwood J Whitlock V Withington, Appl Environ Microbiol 2000 66 3698 3704 10.1128/AEM.66.9.3698-3704.2000 10966379
25. Differentiation of faecal Escherichia coli from humans and animals by multiple antibiotic resistance analysis. A Vantarakis D Venieri G Komninou M Papapetropoulou, Lett Appl Microbiol 2006 42 71 77 10.1111/j.1472-765X.2005. 01803.x 16411923
26. Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method. DM Gordon O Clermont H Tolley E Denamur, Environ Microbiol 2008 10 2484 2496 10.1111/j.1462-2920.2008.01669.x 18518895
27. Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. PJ Herzer S Inouye M Inouye TS Whittam, J Bacteriol 1990 172 6175 6181 1699928
28. Sex and virulence in Escherichia coli: an evolutionary perspective. T Wirth D Falush R Lan F Colles P Mensa LH Wieler H Karch PR Reeves MCJ Maiden H Ochman M Achtman, Mol Microbiol 2006 60 1136 1151 10.1111/j.1365-2958.2006. 05172.x 16689791
29. The population genetics of commensal Escherichia coli. O Tenaillon D Skurnik B Picard E Denamur, Nature Rev Microbiol 2010 8 207 217 10.1038/nrmicro2298
30. The link between phylogeny and virulence in Escherichia coli extraintestinal infection. B Picard JS Garcia S Gouriou P Duriez N Brahimi E Bingen J Elion E Denamur, Infect Immun 1999 67 546 553 9916057
31. Commensal Escherichia coli isolates are phylogenetically distributed among geographically distinct human populations. P Duriez O Clermont S Bonacorsi E Bingen A Chaventre J Elion B Picard E Denamur, Microbiology 2001 147 1671 1676 11390698
32. Large-scale population structure of human commensal Escherichia coli isolates. P Escobar-Paramo K Grenet A Le Menac'h L Rode E Salgado C Amorin S Gouriou B Picard MC Rahimy A Andremont E Denamur R Ruimy, Appl Environ Microbiol 2004 70 5698 5700 10.1128/AEM.70.9.5698-5700.2004 15345464
33. Characteristics of human intestinal Escherichia coli with changing environments. D Skurnik D Bonnet C Bernede-Bauduin R Michel C Guette JM Becker C Balaire F Chau J Mohler V Jarlier JP Boutin B Moreau D Guillemot E Denamur A Andremont R Ruimy, Environ Microbiol 2008 10 2132 2137 10.1111/j.1462-2920.2008. 01636.x 18459976
34. Evidence for a human-specific Escherichia coli clone. O Clermont M Lescat CL O'Brien DM Gordon O Tenaillon E Denamur, Environ Microbiol 2008 10 1000 1006 10.1111/j.1462-2920.2007.01520.x 18177373
35. Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates. P Escobar-Paramo L Menac'h T Le Gall C Amorin S Gouriou B Picard D Skurnik E Denamur, Environ Microbiol 2006 8 1975 1984 10.1111/j.1462-2920.2006.01077.x 17014496
36. Influence of antibiotic selection on genetic composition of Escherichia coli populations from conventional and organic dairy farms. ST Walk JM Mladonicky JA Middleton AJ Heidt JR Cunningham P Bartlett K Sato TS Whittam, Appl Environ Microbiol 2007 73 5982 5989 10.1128/AEM.00709-07 17704272
37. Usages vétérinaires des antibiotiques, résistance bactérienne et conséquences pour la santé humaine. Agence Française de Sécurité Sanitaire des Aliments (AFSSA), Annual report 2006 France
38. Transfer of bacteria contaminated particles in a karst aquifer: evolution of contaminated materials from a sinkhole to a spring. L Dussart-Baptista N Massei J-P Dupont T Jouenne, J Hydrol 2003 284 285 295 10.1016/j.jhydrol.2003. 08.007
39. Effect of human vicinity on antimicrobial resistance and integrons in animal faecal Escherichia coli. D Skurnik R Ruimy A Andremont C Amorin P Rouquet B Picard E Denamur, J Antimicrob Chemother 2006 57 1215 1219 10.1093/jac/dkl122 16581916
40. Cryptic lineages of the genus Escherichia. ST Walk EW Alm DM Gordon JL Ram GA Toranzos JM Tiedje TS Whittam, Appl Environ Microbiol 2009 75 6534 6544 10.1128/AEM.01262-09 19700542
41. Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics. GH Reischer JM Haider R Sommer H Stadler KM Keiblinger R Hornek W Zerobin RL Mach AH Farnleitner, Environ Microbiol 2008 10 2598 2608 10.1111/j.1462-2920.2008.01682.x 18564182
42. Rapid and simple determination of the Escherichia coli phylogenetic group. O Clermont S Bonacorsi E Bingen, Appl Environ Microbiol 2000 66 4555 4558 10.1128/AEM.66.10.4555-4558.2000 11010916
43. Determination of Escherichia coli O types by allele-specific polymerase chain reaction: application to the O types involved in human septicemia. O Clermont JR Johnson M Menard E Denamur, Diagn Microbiol Infect Dis 2007 57 129 136 10.1016/j.diagmicrobio.2006.08.007 17020797
44. Communiqué du comité de l'antibiogramme de la société française de microbiologie. Comité de l'Antibiogramme de la Société Française de Microbiologie, Bulletin de la Société Française de Microbiologie 2001 2 13