The CYP1D subfamily of genes in mammals and other vertebrates

Mammalian Genome

Volumn 21, Issue 5-6, 2010, Pages 320-329

  Kawai, Yusuke K ^a   Ikenaka, Yoshinori ^a   Fujita, Shoichi ^a   Ishizuka, Mayumi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC HYDROCARBON RECEPTOR; CYTOCHROME P450; CYTOCHROME P450 1A; CYTOCHROME P450 1B; CYTOCHROME P450 1C; CYTOCHROME P450 1D; UNCLASSIFIED DRUG; XENOBIOTIC AGENT;

ARTICLE; COMPUTER MODEL; COW; DNA RESPONSIVE ELEMENT; GENE LOCATION; GENETIC ANALYSIS; GENETIC CONSERVATION; MACACA; MAMMAL; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPOSSUM; PHYLOGENY; PLATYPUS; PROMOTER REGION; PSEUDOGENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SYNTENY; VERTEBRATE; ANIMAL; BOVINAE; GENETICS; HUMAN;

ANIMALS; CATTLE; CYTOCHROME P-450 ENZYME SYSTEM; HUMANS; MAMMALS; MULTIGENE FAMILY; PHYLOGENY; SYNTENY; VERTEBRATES;

BOVINAE; MAMMALIA; VERTEBRATA;

EID: 77955658687     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-010-9263-9     Document Type: Article

References (21)

1. Can"estro C, Catchen JM, Rodríguez-Marí A, Yokoi H, Postlethwait JH (2009) Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. PLoS Genet 5:e1000496
2. Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214
3. Fujita Y, Ohi H, Murayama N, Saguchi KI, Higuchi S (1999) Molecular cloning and sequence analysis of cDNAs coding for 3-methylcholanthrene-inducible cytochromes P450 in Xenopus laevis liver. Arch Biochem Biophys 371(1):24-28
4. Godard CA, Goldstone JV, Said MR, Dickerson RL, Woodin BR et al (2005) The new vertebrate CYP1C family: Cloning of new subfamily members and phylogenetic analysis. Biochem Biophys Res Commun 331(4):1016-1024
5. Goldstone HM, Stegeman JJ (2006) A revised evolutionary history of the CYP1A subfamily: gene duplication, gene conversion, and positive selection. J Mol Evol 62:708-717
6. Goldstone JV, Stegeman JJ (2008) Gene structure of the novel cytochrome P4501D1 genes in stickleback (Gasterosteus aculeatus) and medaka (Oryzias latipes). Mar Environ Res 66(1): 19-20
7. Goldstone JV, Goldstone HMH, Morrison AM, Tarrant A, Kern SE et al (2007) Cytochrome P450 1 genes in early deuterostomes (tunicates and sea urchins) and vertebrates (chicken and frog): origin and diversification of the CYP1 gene family. Mol Evol 24(12):2619-2631
8. Goldstone JV, Jönsson ME, Behrendt L, Woodin BR, Jenny MJ et al (2009) Cytochrome P450 1D1: a novel CYP1A-related gene that is not transcriptionally activated by PCB126 or TCDD. Arch Biochem Biophys 482(1-2):7-16
9. Gotoh O (1992) Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences. J Biol Chem 267:83-90
10. Heinemeyer T, Wingender E, Reuter I, Hermjakob H, Kel AE et al (1998) Databases on transcriptional regulation: TRANSFAC, TRRD, and COMPEL. Nucleic Acids Res 26:364-370
11. Jönsson ME, Orrego R, Woodin BR, Goldstone JV, Stegeman JJ (2007) Basal and 3,30,4,40,5-pentachlorobiphenyl-induced expression of cytochrome P450 1A, 1B and 1C genes in zebrafish. Toxicol Appl Pharmacol 221(1):29-41
12. Jönsson ME, Franks DG, Woodin BR, Jenny MJ, Garrick RA et al (2009) The tryptophan photoproduct 6-formylindolo[3,2-b]carbazole (FICZ) binds multiple AHRs and induces multiple CYP1 genes via AHR2 in zebrafish. Chem Biol Interact 181(3): 447-454
13. Keane TM, Creevey CJ, Pentony MM, Naughton TJ, Mclnerney JO (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 6:29
14. Nebert DW, Dalton TP, Okey AB, Gonzalez FJ (2004) Role of aryl hydrocarbon receptor-mediated induction of the CYP1 enzymes in environmental toxicity and cancer. J Biol Chem 279(23): 23847-23850
15. Rice P, Longden I, Bleasby A (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 16(6):276-277
16. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12): 1572-1574
17. Sogawa K, Numayama-Tsuruta K, Takahashi T, Matsushita N, Miura C et al (2004) A novel induction mechanism of the rat CYP1A2 gene mediated by Ah receptor-Arnt heterodimer. Biochem Biophys Res Commun 318:746-755
18. Sutter TR, Tang YM, Hayes CL, Wo YY, Jabs EW et al (1994) Complete cDNA sequence of a human dioxin-inducible mRNA identifies a new gene subfamily of cytochrome P450 that maps to chromosome 2. J Biol Chem 269(18):13092-13099
19. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24(8):1596-1599
20. Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24(8):1586-1591
21. Zanette J, Jenny MJ, Goldstone JV, Woodin BR, Watka LA et al (2009) New cytochrome P450 1B1, 1C2, and 1D1 genes in killifish Fundulus heteroclitus: basal expression and response of five killifish CYP1s to the AHR agonist PCB126. Aquat Toxicol 93(4):234-243