The NMR solution structure of subunit G (G61-101) of the eukaryotic V1VO ATPase from Saccharomyces cerevisiae

Biochimica et Biophysica Acta - Biomembranes

Volumn 1798, Issue 10, 2010, Pages 1961-1968

  Rishikesan, Sankaranarayanan ^a   Manimekalai, Malathy S S ^a   Grüber, Gerhard ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

Stalk subunit; Subunit d; Subunit E; Subunit G; V1VO ATPase; Vacuolar type ATPase; Vma10p

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ALANINE; CYSTEINE; MUTANT PROTEIN; PROTEIN SUBUNIT; PROTON PUMP; SACCHAROMYCES CEREVISIAE PROTEIN; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; SOLUTION AND SOLUBILITY; VMA10 PROTEIN, S CEREVISIAE;

ALPHA HELIX; AMINO ACID SUBSTITUTION; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DISULFIDE BOND; EUKARYOTE; HYDROPHOBICITY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; SACCHAROMYCES CEREVISIAE; STRUCTURE ANALYSIS; SURFACE CHARGE; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; CIRCULAR DICHROISM; ENZYMOLOGY; EUKARYOTIC CELL; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROCEDURES; PROTEIN MULTIMERIZATION; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY; SOLUTION AND SOLUBILITY;

AMINO ACID SEQUENCE; CIRCULAR DICHROISM; CYSTEINE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EUKARYOTIC CELLS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, SECONDARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SOLUTIONS; VACUOLAR PROTON-TRANSLOCATING ATPASES;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 77955657913     PISSN: 00052736     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamem.2010.06.012     Document Type: Article

References (47)

1. + ATPase: molecular structure and function, physiological roles and regulation. J. Exp. Biol. 2006, 209:577-589.
2. Nishi T., Forgac M. The vacuolar (H+)-ATPases-nature's most versatile proton pumps. Nature Mol. Cell Biol. 2002, 30:94-103.
3. Lolkema J.S., Chaban Y., Boekema E.J. Subunit composition, structure, and distribution of bacterial V-Type ATPase. J. Bioenerg. Biomembr. 2003, 35:323-336.
4. +-ATPase-an enzyme for all seasons. Pflugers Arch- Eur J. Physiol. 2009, 457:581-587.
5. O). Bioessays 2008, 30:1096-1099.
6. 1-ATPase. J. Struct. Biol. 2001, 135:26-37.
7. 3EG-complex by electron microscopy. J. Biol. Chem. 2003, 278:270-275.
8. Sumner J.P., Dow J.A.T., Earley F.G., Klein U., Jäger D., Wieczorek H. Regulation of plasma-membrane V-ATPase activity by dissociation of peripheral subunits. J. Biol. Chem. 1995, 270:5649-5653.
9. +-ATPase assembly and activity in blowfly salivary glands. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:3926-3931.
10. +-ATPase in Vivo. J. Biol. Chem. 1995, 270:17025-17032.
11. Svergun D.I., Konrad S., Huss M., Koch M.H.J., Wieczorek H., Altendorf K., Volkov V.V., Grüber G. Quaternary structure of V1 and F1 ATPase: significance of structural homologies and diversities. Biochemistry 1998, 37:17659-17663.
12. Wilkens S., Zhang Z., Zheng Y. A structural model of the vacuolar ATPase from transmission electron microscopy. Micron 2005, 36:109-126.
13. 1 domain by interaction with the rotary subunit F. J. Biol. Chem. 2007, 283:4512-4519.
14. +)-ATPase complex. J. Biol. Chem. 1999, 274:28909-28915.
15. Venzke D., Domgall I., Kocher T., Fethiere J., Fischer S., Böttcher B. Elucidation of the stator organization in the V-ATPase of Neurospora crassa. J. Mol. Biol. 2005, 349:659-669.
16. Armbrüster A., Svergun D.I., Coskun Ü., Juliano S., Bailer S.M., Grüber G. Structural analysis of the stalk subunit Vma5p of the Yeast V-ATPase in solution. FEBS Lett. 2004, 570:119-125.
17. Drory O., Frolow F., Nelson N. Crystal structure of yeast V-ATPase subunit C reveals its stator function. EMBO Rep. 2004, 5:1148-1152.
18. Sagermann M., Stevens T.H., Matthews B.W. Crystal structure of the regulatory subunit H of the V-type ATPase of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:7134-7139.
19. Armbrüster A., Bailer S.M., Koch M.H.J., Godovac-Zimmermann J., Grüber G. Dimer formation of subunit G of the Yeast V-ATPase. FEBS Lett. 2003, 546:395-400.
20. Lipier A., Gräf R., Azuma M., Merzendorfer H., Harvey W.R., Wieczorek H. The peripheral complex of the Tobacco hornworm V-ATPase contains a novel 13-kDa subunit G. J. Biol. Chem. 1996, 271:8502-8508.
21. +-ATPase. J. Biol. Chem. 2000, 275:37232-37239.
22. Sun-Wada G.-H., Imai-Senga Y., Yamamoto A., Murata Y., Hirata T., Wada Y., Futai M. A proton pump ATPase with testis-specific E1-subunit isoform required for acrosome acidification. J. Biol. Chem. 2002, 277:18098-18105.
23. Hayashi K., Sun-Wada G.-H., Wada Y., Nakanishi-Matsui M., Futai M. Defective assembly of a hybrid vacuolar H(+)-ATPase containing the mouse testis-specific E1 isoform and yeast subunits. Biochem. Biophys. Acta 2008, 1777:1370-1377.
24. O ATPase. Biochim. Biophys. Acta - Bioenerg. 2009, 1787:242-251.
25. Grüber G., Godovac-Zimmermann J., Link T.A., Coskun Ü., Rizzo V.F., Betz C., Bailer S. Expression, purification and characterization of subunit E, an essential subunit of the vacuolar-ATPase. Biochem. Biophys. Res. Comm. 2002, 298:383-391.
26. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
27. Kneller D.G., Goddard T.D. SPARKY 3.105 edit 1997, University of California, San Francisco, CA.
28. Berjanskii M.V., Neal S., Wishart D.S. PREDITOR: a web server for predicting protein torsion angle restraints. Nucleic Acids Res. 2006, 34:63-69.
29. Wüthrich K. NMR of Proteins and Nuclei acids 1986, Wiley, Interscience, New York.
30. Herrmann T., Güntert P., Wüthrich K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 2002, 319:209-227.
31. Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 1996, 14:51-55.
32. Gibbs S.J., Johnson C.S.J. A PFG NMR experiment for accurate diffusion and flow studies in the presence of eddy currents. J. Magn. Reson. 1969, 93:395-402.
33. Wilkins D.K., Grimshaw S.B., Receveur V., Dobson C.M., Jones J.A. Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques. Biochemistry 1999, 38:16424-16431.
34. Tovchigrechko A., Vakser I.A. GRAMM-X public web server for protein-protein docking. Nucleic Acids Res. 2006, 34:310-314.
35. Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18:2714-2723.
36. Wüthrich K., Wider G., Wagner G., Braun W. Sequential resonance assignments as a basis for determination of spatial protein structures by high resolution proton nuclear magnetic resonance. J. Mol. Biol. 1982, 155:311-319.
37. Kandasamy S.K., Lee D.K., Naga R.P.R., Xu J., Santos J.S., Larson R.G., Ramamoorthy A. Solid-state NMR and molecular dynamics simulations reveal the oligomeric ion-channels of TM2-GABAA stabilized by intermolecular hydrogen bonding. Biochem. Biophys. Acta 2009, 1778:686-695.
38. Naga R.P.R., Brender J.R., Vivekanandan S., Popovych N., Ramamoorthy A. NMR structure in a membrance environment reveals putative amyloidogenic regions of the SEVI precursor peptide. J. Am. Chem. Soc. 2009, 131:17972-17979.
39. Rishikesan S., Thaker Y.R., Priya R., Gayen S., Manimekalai M.S.S., Hunke C., Grüber G. Spectroscopic identification of residues of subunit G of the yeast V-ATPase in its connection with subunit E. Mol. Membr. Biol. 2008, 25:400-410.
40. +-ATPase. Biochemistry 2005, 44:3933-3941.
41. 1-ATPase determined by mass spectrometry. J. Biol. Chem. 2008, 283:3329-3337.
42. Lu M., Vergara S., Zhang L., Holliday L.S., Aris J., Gluck S.L. The amino-terminal domain of the E subunit of vacuolar H(+)-ATPase (V-ATPase) interacts with the H subunit and is required for V-ATPase function. J. Biol. Chem. 2002, 277:38409-38415.
43. Ohira M., Smardon A.M., Charsky C.M., Liu J., Tarsio M., Kane P.M. The E and G subunits of the yeast V-ATPase interacts tightly and are both present at more than one copy per V1 complex. J. Biol. Chem. 2006, 281:22752-22760.
44. Hunt I.E., Bowman B.J. The Intriguing evolution of the "b" and "G" Subunit in F-type and V-type ATPase: Isolation of the vma-10 gene from Neurospora crassa. J. Bioenerg. Biomembr. 1997, 29:533-540.
45. Parry D.A., Fraser R.D., Squire J.M. Fifty years of coiled-coils and α-helical bundles: a close relationship between sequence and structure. J. Struct. Biol. 2008, 163:258-269.
46. +-ATPase/synthase. Nat. Struct. Mol. Biol. 2010, 17:373-378.
47. DeLano W.L. The pyMol Molecular Graphics System San Carlos, CA: DeLano Scientific 2001.