Tateyamaria pelophila sp. nov., a facultatively anaerobic alphaproteobacterium isolated from tidal-flat sediment, and emended descriptions of the genus Tateyamaria and of Tateyamaria omphalii

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 8, 2010, Pages 1770-1777

  Sass, Henrik ^a,b   Köpke, Beate ^a   Rütters, Heike ^a   Feuerlein, Theresa ^a   Dröge, Stefan ^a   Cypionka, Heribert ^a   Engelen, Bert ^a  

^a UNIVERSITY OF OLDENBURG   (Germany)

^b CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLOROPHYLL A; CATALASE; FATTY ACID; OXIDOREDUCTASE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; GERMANY; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; ROSEOBACTER; SEASHORE; SEDIMENT; TATEYAMARIA OMPHALII; TATEYAMARIA PELOPHILA;

BACTERIA, ANAEROBIC; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER;

ALPHAPROTEOBACTERIA; NEGIBACTERIA; PELOPHILA; ROSEOBACTER;

EID: 77955623460     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.013524-0     Document Type: Article

References (33)

1. Buchan, A., Gonzalez, J. M. & Moran, M. A. (2005). Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71, 5665-5677.
2. Cohen-Bazire, G., Sistrom, W. R. & Stanier, R. Y. (1957). Kinetic studies of pigment synthesis by nonsulfur purple bacteria. J Cell Comp Physiol 49, 25-68.
3. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
4. Gonzalez, J. M. & Moran, M. A. (1997). Numerical dominance of a group of marine bacteria in the a-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol 63, 4237-4242.
5. Gonzalez, J. M., Kiene, R. P. & Moran, M. A. (1999). Transformation of sulfur compounds by an abundant lineage of marine bacteria in the alpha-subclass of the class Proteobacteria. Appl Environ Microbiol 65, 3810-3819. (Pubitemid 129519830)
6. Hugenholtz, P., Goebel, B. M. & Pace, N. R. (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180, 4765-4774. (Pubitemid 28429361)
7. Isaksen, M. F. & Jørgensen, B. B. (1996). Adaptation of psychrophilic and psychrotrophic sulfate-reducing bacteria to permanently cold marine environments. Appl Environ Microbiol 62, 408-414. (Pubitemid 26047405)
8. Ivanova, E. P., Gorshkova, N. M., Sawabe, T., Zhukova, N. V., Hayashi, K., Kurilenko, V. V., Alexeeva, Y., Buljan, V., Nicolau, D. V. & other authors (2004). Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea grass (Zostera marina). Int J Syst Evol Microbiol 54, 475-480.
9. Johnson, J. E. & Hill, R. T. (2003). Sediment microbes of deep-sea bioherms on the Northwest Shelf of Australia. Microb Ecol 46, 55-61.
10. Köpke, B., Wilms, R., Engelen, B., Cypionka, H. & Sass, H. (2005). Microbial diversity in coastal subsurface sediments: a cultivation approach using various electron acceptors and substrate gradients. Appl Environ Microbiol 71, 7819-7830. (Pubitemid 41803901)
11. Kurahashi, M. & Yokota, A. (2007). Tateyamaria omphalii gen. nov., sp. nov., an a-Proteobacterium isolated from a top shell Omphalius pfeifferi pfeifferi. Syst Appl Microbiol 30, 371-375. (Pubitemid 46962942)
12. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G. & Hirsch, P. (1998). Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int J Syst Bacteriol 48, 1363-1372. (Pubitemid 28523350)
13. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49, 137-147. (Pubitemid 29225871)
14. Labrenz, M., Tindall, B. J., Lawson, P. A., Collins, M. D., Schumann, P. & Hirsch, P. (2000). Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., α-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake. Int J Syst Evol Microbiol 50, 303-313. (Pubitemid 30084085)
15. Martens-Habbena, W. & Sass, H. (2006). Sensitive determination of microbial growth by nucleic acid staining in aqueous suspension. Appl Environ Microbiol 72, 87-95.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Mullins, T. D., Britschgi, T. B., Krest, R. L. & Giovannoni, S. J. (1995). Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40, 148-158.
18. Murray, P. R., Baron, E. J., Pfaller, M. A., Tenover, F. C. & Yolken, R. H. (1995). Manual of Clinical Microbiology, 6th edn. Washington, DC: American Society for Microbiology.
19. Pukall, R., Buntefuß, D., Frühling, A., Rohde, M., Kroppenstedt, R. M., Burghardt, J., Lebaron, P., Bernard, L. & Stackebrandt, E. (1999). Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the a-Proteobacteria. Int J Syst Bacteriol 49, 513-519.
20. Rappé, M. S. & Giovannoni, S. J. (2003). The uncultured microbial majority. Annu Rev Microbiol 57, 369-394.
21. Reeves, D. S., Holt, A., Bywater, M. J., Wise, R., Logan, M. N., Andrews, J. M. & Broughall, J. M. (1980). Comparison of sensititre dried microtitration trays with a standard agar method for determination of minimum inhibitory concentrations of antimicrobial agents. Antimicrob Agents Chemother 18, 844-852.
22. Rütters, H., Sass, H., Cypionka, H. & Rullkötter, J. (2001). Monoalkylether phospholipids in the sulfate-reducing bacteria Desulfosarcina variabilis and Desulforhabdus amnigenus. Arch Microbiol 176, 435-442.
23. Rütters, H., Sass, H., Cypionka, H. & Rullkötter, J. (2002). Phospholipid analysis as a tool to study microbial communities J Microbiol Methods 48, 149-160.
24. Sass, A., Rütters, H., Cypionka, H. & Sass, H. (2002). Desulfobulbus mediterraneus sp. nov., a sulfate-reducing bacterium growing on mono- and disaccharides. Arch Microbiol 177, 468-474.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
26. Selje, N., Simon, M. & Brinkhoff, T. (2004). A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427, 445-448.
27. Shiba, T. (1991). Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst Appl Microbiol 14, 140-145.
28. Sorokin, D. Y. (1995). Sulfitobacter pontiacus gen. nov., sp. nov. - a new heterotrophic bacterium from the Black Sea, specialized on sulfite oxidation. Microbiology (English translation of Mikrobiologiia) 64, 295-305.
29. Süß, J., Engelen, B., Cypionka, H. & Sass, H. (2004). Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods. FEMS Microbiol Ecol 51, 109-121.
30. Süß, J., Herrmann, K., Seidel, M., Cypionka, H., Engelen, B. & Sass, H. (2008). Two distinct Photobacterium populations thrive in ancient Mediterranean sapropels. Microb Ecol 55, 371-383.
31. Wagner-Döbler, I., Rheims, H., Felske, A., El-Ghezal, A., Flade-Schröder, D., Laatsch, H., Lang, S., Pukall, R. & Tindall, B. J. (2004). Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites. Int J Syst Evol Microbiol 54, 1177-1184.
32. Webster, G., Blazejak, A., Cragg, B. A., Schippers, A., Sass, H., Rinna, J., Tang, X., Mathes, F., Ferdelman, T. & other authors (2009). Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307). Environ Microbiol 11, 239-257.
33. Yoon, J.-H., Kang, S.-J., Lee, M.-H. & Oh, T.-K. (2007). Description of Sulfitobacter donghicola sp. nov., isolated from seawater of the East Sea in Korea, transfer of Staleya guttiformis Labrenz et al. 2000 to the genus Sulfitobacter as Sulfitobacter guttiformis comb. nov. and emended description of the genus Sulfitobacter. Int J Syst Evol Microbiol 57, 1788-1792.