Pusillimonas ginsengisoli sp. nov., isolated from soil of a ginseng field

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 8, 2010, Pages 1783-1787

  Srinivasan, Sathiyaraj ^a   Kim, Myung Kyum ^a,b   Sathiyaraj, Gayathri ^a   Kim, Yeon Ju ^a   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

^b Seoul Women University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; FATTY ACID; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; UBIQUINONE;

ACHROMOBACTER DENITRIFICANS; ACHROMOBACTER INSOLITUS; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BETAPROTEOBACTERIA; BORDETELLA; BORDETELLA TREMATUM; CHEMOTAXONOMY; FATTY ACID ANALYSIS; GENE SEQUENCE; GENOTYPE; GINSENG; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PIGMENTIPHAGA KULLAE; PRIORITY JOURNAL; PUSILLIMONAS GINSENGISOLI; PUSILLIMONAS NOERTEMANNII; SEQUENCE HOMOLOGY; SOIL MICROFLORA; SOUTH KOREA; TAXONOMY;

ALCALIGENACEAE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PANAX; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ACHROMOBACTER DENITRIFICANS; ACHROMOBACTER INSOLITUS; BETAPROTEOBACTERIA; BORDETELLA TREMATUM; NEGIBACTERIA; PANAX GINSENG; PIGMENTIPHAGA KULLAE; PUSILLIMONAS; PUSILLIMONAS NOERTEMANNII;

EID: 77955614330     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.018358-0     Document Type: Article

References (22)

1. Blümel, S., Mark, B., Busse, H.-J., Kämpfer, P. & Stolz, A. (2001). Pigmentiphaga kullae gen. nov., sp. nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically. Int J Syst Evol Microbiol 51, 1867-1871.
2. Buck, J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: a Laboratory Manual, 6th edn. Menlo Park, CA: Benjamin/Cummings.
4. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
5. De Ley, J., Segers, P., Kersters, K., Mannheim, W. & Lievens, A. (1986). Intra- and intergeneric similarities of the Bordetella ribosomal ribonucleic acid cistrons: proposal for a new family, Alcaligenaceae. Int J Syst Bacteriol 36, 405-414. (Pubitemid 16057131)
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
9. Kim, M. K., Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a beta-glucosidase-producing bacterium in the family Sphingomonadaceae in alpha-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
10. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
11. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
16. T. J Microbiol Biotechnol 6, 68-69.
17. Stolz, A., Bürger, S., Kuhm, A., Kämpfer, P. & Busse, H.-J. (2005). Pusillimonas noertemannii gen. nov., sp. nov., a new member of the family Alcaligenaceae that degrades substituted salicylates. Int J Syst Evol Microbiol 55, 1077-1081.
18. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. von Wintzingerode, F., Schattke, A., Siddiqui, R. A., Rösick, U., Göbel, U. B. & Gross, R. (2001). Bordetella petrii sp. nov., isolated from an anaerobic bioreactor, and emended description of the genus Bordetella. Int J Syst Evol Microbiol 51, 1257-1265.
21. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
22. Yabuuchi, E. & Yano, I. (1981). Achromobacter gen. nov. and Achromobacter xylosoxidans (ex Yabuuchi and Ohyama 1971) nom. rev. Int J Syst Bacteriol 31, 477-478.