Quantitative and qualitative transitions of methanogen community structure during the batch anaerobic digestion of cheese-processing wastewater

Applied Microbiology and Biotechnology

Volumn 87, Issue 5, 2010, Pages 1963-1973

  Lee, Changsoo ^a   Kim, Jaai ^b   Shin, Seung Gu ^c   O'Flaherty, Vincent ^b   Hwang, Seokhwan ^c  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^b NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^c Pohang University of Science and Technology (POSTECH)   (South Korea)

Author keywords

Anaerobic digestion; Denaturing gradient gel electrophoresis (DGGE); Microbial community structure; Non metric multidimensional scaling (NMS); Real time PCR

Indexed keywords

16S RRNA GENE; ANAEROBIC DIGESTION PROCESS; BIOGAS PRODUCTION; COMMUNITY STRUCTURES; DATA SETS; DENATURING GRADIENT GEL ELECTROPHORESIS; DYNAMIC VARIATIONS; METHANE PRODUCTION; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURES; NON-METRIC MULTIDIMENSIONAL SCALING; PROCESS PERFORMANCE; REAL-TIME PCR; WHEY PERMEATE;

BATCH DATA PROCESSING; BIOGAS; DENATURATION; ELECTROPHORESIS; FATTY ACIDS; GELS; METHANE; METHANOGENS; ORGANIC ACIDS; QUALITY CONTROL; RNA; SOCIAL SCIENCES; WASTEWATER;

ANAEROBIC DIGESTION;

BIOGAS; CARBOXYLIC ACID; LONG CHAIN FATTY ACID; METHANE; RNA 16S; ACETIC ACID DERIVATIVE; BACTERIAL DNA; FATTY ACID; INDUSTRIAL WASTE; RIBOSOME DNA;

ACETATE; COMMUNITY STRUCTURE; DATA SET; ELECTROKINESIS; FATTY ACID; FOOD PROCESSING; GEL; METHANE; METHANOGENIC BACTERIUM; MILK; ORGANIC ACID; POLYMERASE CHAIN REACTION; REAL TIME; WASTEWATER;

ANAEROBIC DIGESTION; ARCHAEBACTERIUM; ARTICLE; BATCH PROCESS; BIOREACTOR; CHEESE; CONTROLLED STUDY; DAIRY INDUSTRY; DENATURING GRADIENT GEL ELECTROPHORESIS; METHANOGEN; METHANOGENIC BACTERIUM; METHANOMICROBIALES; METHANOSARCINA; MICROBIAL COMMUNITY; MICROBIAL POPULATION DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; WASTE WATER MANAGEMENT; WHEY; ANAEROBIC GROWTH; BACTERIA; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA DENATURATION; DNA SEQUENCE; FOOD INDUSTRY; GENETICS; GROWTH, DEVELOPMENT AND AGING; INDUSTRIAL WASTE; METABOLISM; MOLECULAR GENETICS; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PROCEDURES; WATER MANAGEMENT;

ACETATES; ANAEROBIOSIS; BACTERIA; BIODIVERSITY; CHEESE; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FATTY ACIDS; FOOD INDUSTRY; INDUSTRIAL WASTE; METHANE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID DENATURATION; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; WATER PURIFICATION;

METHANOFOLLIS; METHANOMICROBIALES; METHANOSARCINA; METHANOSARCINACEAE;

EID: 77955560665     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2685-1     Document Type: Article

References (36)

1. AT Akarsubasi O Ince B Kirdar NA Oz D Orhon TP Curtis IM Head BK Ince 2005 Effect of wastewater composition on archaeal population diversity Water Res 39 1576 1584 10.1016/j.watres.2004.12.041 1:CAS:528:DC%2BD2MXjvVCks7w%3D (Pubitemid 40631563)
2. RI Amann W Ludwig K Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169 1:CAS:528:DyaK2MXkvVGmurk%3D
3. LT Angenent S Sung L Raskin 2002 Methanogenic population dynamics during startup of a full scale anaerobic sequencing batch reactor treating swine waste Water Res 36 4648 4654 10.1016/S0043-1354(02)00199-9 1:CAS:528: DC%2BD38XmvF2ktbo%3D (Pubitemid 35286850)
4. APHA-AWWA-WEF (2005) Standard methods for the examination of water and wastewater, 21st edn. American Public Health Association, Washington, DC
5. Boone DR, Castenholz RW (2001) Bergey's manual of systematic bacteriology: the archaea and the deeply branching and phototrophic bacteria, 2nd edn. Springer, New York
6. B Calli B Mertoglu B Inanc O Yenigun 2005 Methanogenic diversity in anaerobic bioreactors under extremely high ammonia levels Enzyme Microb Technol 37 448 455 10.1016/j.enzmictec.2005.03.013 1:CAS:528:DC%2BD2MXmt1ejsrg%3D (Pubitemid 40966942)
7. S Connaughton G Collins V O'Flaherty 2006 Development of microbial community structure and activity in high-rate anaerobic bioreactor at 18°C Water Res 40 1009 1017 10.1016/j.watres.2005.12.026 1:CAS:528: DC%2BD28XhslKis70%3D (Pubitemid 43287912)
8. AS Fernandez SA Hashsham SL Dollhopf L Raskin O Glagoleva FB Dazzo RF Hickey CS Criddle JM Tiedje 2000 Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose Appl Environ Microbiol 66 4058 4067 10.1128/AEM.66.9.4058-4067.2000 1:CAS:528:DC%2BD3cXmsVajsb0%3D
9. LJ Forney X Zhou CJ Brown 2004 Molecular microbial ecology: land of the one-eyed king Curr Opin Microbiol 7 210 220 10.1016/j.mib.2004.04.015 1:CAS:528:DC%2BD2cXkvV2ns7s%3D (Pubitemid 38758061)
10. J Fry 2000 Bacterial diversity and 'unculturables' Microbiol Today 27 186 188
11. SJ Giovannoni TB Britschgi CL Moyer KG Field 1990 Genetic diversity in Sargasso Sea bacterioplankton Nature 345 60 63 10.1038/345060a0 1:CAS:528:DyaK3cXktFymu7s%3D (Pubitemid 20152450)
12. T Hori S Haruta Y Ueno M Ishii Y Igarashi 2006 Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester Appl Environ Microbiol 72 1623 1630 10.1128/AEM.72.2.1623-1630.2006 1:CAS:528:DC%2BD28Xhs1Ghu7w%3D (Pubitemid 43271278)
13. K Hwang SG Shin J Kim S Hwang 2008 Methanogenic profiles by denaturing gradient gel electrophoresis using order-specific primers in anaerobic sludge digestion Appl Microbiol Biotechnol 80 269 276 10.1007/s00253-008-1544-9 1:CAS:528:DC%2BD1cXptVeqt7o%3D
14. SH Hwang CL Hansen 1992 Performance of upflow anaerobic sludge blanket (UASB) reactor treating whey permeate Trans ASAE 35 1665 1671
15. J Kim C Lee SG Shin S Hwang 2008 Correlation of microbial mass with ATP and DNA concentrations in acidogenesis of whey permeate Biodegradation 19 187 195 10.1007/s10532-007-9125-7 1:CAS:528:DC%2BD1cXitl2jtL4%3D (Pubitemid 351311397)
16. D Klein 2002 Quantification using real-time PCR technology: applications and limitations Trend Mol Med 8 257 260 10.1016/S1471-4914(02)02355-9 1:CAS:528:DC%2BD38XksVSnsbo%3D (Pubitemid 34568376)
17. C Lee J Kim SG Shin S Hwang 2008 Monitoring bacterial and archaeal community shifts in a mesophilic anaerobic batch reactor treating a high-strength organic wastewater FEMS Microbiol Ecol 65 544 554 10.1111/j.1574-6941.2008.00530.x 1:CAS:528:DC%2BD1cXhtVGrurrI
18. C Lee J Kim K Hwang V O'Flaherty S Hwang 2009 Quantitative analysis of methanogenic community dynamics in three anaerobic batch digesters treating different wastewaters Water Res 43 157 165 10.1016/j.watres.2008.09.032 1:CAS:528:DC%2BD1cXhsFCjtrrK
19. McCune B, Grace JB (2002) Analysis of ecological communities. ed. MjM Software Design, Glenden Beach, OR, USA
20. KD McMahon D Zheng AJM Stams RI Mackie L Raskin 2004 Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge Biotechnol Bioeng 87 823 834 10.1002/bit.20192 1:CAS:528:DC%2BD2cXns1alu7k%3D (Pubitemid 39265079)
21. G Muyzer EC Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700 1:CAS:528:DyaK3sXit1Kktrk%3D
22. 1 compounds in the sediment of Lake Washington, a fresh water lake Appl Environ Microbiol 71 6885 6899 10.1128/AEM.71.11.6885-6899.2005 1:CAS:528:DC%2BD2MXht1ekurzP (Pubitemid 43194178)
23. V O'Flaherty S Colohan D Mulkerrins E Colleran 1999 Effect of sulphate addition on volatile fatty acid and ethanol degradation in an anaerobic hybrid reactor. II: microbial interactions and toxic effects Bioresour Technol 68 109 120 10.1016/S0960-8524(98)00146-1 (Pubitemid 29047976)
24. K Obata O Segawa M Yakabe Y Ishida T Kuroita K Ikeda B Kawakami Y Kawamura M Yohda T Matsunaga H Tajima 2001 Development of a novel method for operating magnetic particles, magtration technology, and its use for automating nucleic acid purification J Biosci Bioeng 91 500 503 10.1263/jbb.91.500 1:CAS:528:DC%2BD3MXlvF2nsbw%3D
25. L Raskin D Zheng ME Griffin PG Stroot P Misra 1995 Characterization of microbial communities in anaerobic bioreactors using molecular probes Antonie Leeuwenhoek 68 297 308 10.1007/BF00874140 1:CAS:528:DyaK28XhsFWmtLg%3D (Pubitemid 26024800)
26. K Roest HGHJ Heilig H Smidt WM de Vos AJM Stams ADL Akkermans 2005 Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater Syst Appl Microbiol 28 175 185 10.1016/j.syapm.2004.10.006 1:CAS:528:DC%2BD2MXltFSgsbs%3D (Pubitemid 40292797)
27. S Sawayama K Tsukahara T Yagishita 2006 Phylogenetic description of immobilized methanogenic community using real-time PCR in a fixed-bed anaerobic digester Bioresour Technol 97 69 76 10.1016/j.biortech.2005.02.011 1:CAS:528:DC%2BD2MXpvVSkurw%3D (Pubitemid 41265790)
28. SG Shin C Lee K Hwang J-H Ahn S Hwang 2008 Use of order-specific primers to investigate the methanogenic diversity in acetate enrichment system J Ind Microbiol Biotechnol 35 1345 1352 10.1007/s10295-008-0417-7 1:CAS:528: DC%2BD1cXht1eqtLnN
29. K-Y Show Y Wang S-F Foong JHJ-H Tay 2004 Accelerated start-up and enhanced granulation in upflow anaerobic sludge blanket reactors Water Res 38 2293 2304 10.1016/j.watres.2004.01.039 1:CAS:528:DC%2BD2cXjvFOjsLo%3D (Pubitemid 38622150)
30. 13C-NMR spectroscopy to the elucidation of pathways of propionate formation and degradation in methanogenic environments Biodegradation 9 463 473 10.1023/A:1008342130938 1:CAS:528:DyaK1MXltVKis7o%3D (Pubitemid 29202814)
31. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599 10.1093/molbev/msm092 1:CAS:528:DC%2BD2sXpsVGrsL8%3D (Pubitemid 47236692)
32. Y-Q Tang T Shigematsu S Morimura K Kida 2007 Effect of dilution rate on the microbial structure of a mesophilic butyrate-degrading methanogenic community during continuous cultivation Appl Microbiol Biotechnol 75 451 465 10.1007/s00253-006-0819-2 1:CAS:528:DC%2BD2sXmsV2iu7w%3D (Pubitemid 46866526)
33. S Tejayadi M Cheryan 1995 Lactic acid from cheese whey permeate. Productivity and economics of a continuous membrane bioreactor Appl Microbiol Biotechnol 43 242 248 10.1007/BF00172819 1:CAS:528:DyaK2MXmtl2qsrY%3D
34. Y Ueno S Haruta M Ishii Y Igarashi 2001 Changes in product formation an bacterial community by dilution rate on carbohydrate fermentation by methanogenic microflora in continuous flow stirred tank reactor Appl Microbiol Biotechnol 57 65 73 10.1007/s002530100760 1:CAS:528:DC%2BD3MXotVSnu74%3D (Pubitemid 32938353)
35. Y Yu C Lee J Kim S Hwang 2005 Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction Biotechnol Bioeng 89 670 679 10.1002/bit.20347 1:CAS:528: DC%2BD2MXitFyhtLs%3D (Pubitemid 40470355)
36. Y Yu J Kim S Hwang 2006 Use of real-time PCR for group-specific quantification of aceticlastic methanogens in anaerobic processes: population dynamics and community structures Biotechnol Bioeng 93 424 433 10.1002/bit.20724 1:CAS:528:DC%2BD28Xht1KrsLw%3D (Pubitemid 43232169)