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Volumn 87, Issue 4, 2010, Pages 1455-1461

Genomic structure and promoter analysis of the dsz operon for dibenzothiophene biodesulfurization from Gordonia alkanivorans RIPI90A

Author keywords

Biodesulfurization; dsz operon; Gordonia alkanivorans; PCR walking; Promoter analysis; Reporter gene

Indexed keywords

BIODESULFURIZATION; DELETION ANALYSIS; DIBENZOTHIOPHENES; DSZ GENE; GENOMIC STRUCTURE; GORDONIA; PROMOTER ANALYSIS; PROMOTER SEQUENCES; REPORTER GENE; RHODOCOCCUS ERYTHROPOLIS; WALKING STRATEGY;

EID: 77955558021     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2605-4     Document Type: Article
Times cited : (33)

References (33)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 2
    • 33947583840 scopus 로고    scopus 로고
    • Sequencing, cloning and expression of the dsz genes required for dibenzothiophene sulfone desulfurization from Gordonia alkanivorans strain 1B
    • DOI 10.1016/j.enzmictec.2006.11.008, PII S0141022906005667
    • L Alves M Melo D Mendonca F Simoes J Matos R Tenreiro FM Girio 2007 Sequencing, cloning and expression of the dsz genes required for dibenzothiophene sulfone desulfurization from Gordonia alkanivorans strain 1B Enzyme Microb Technol 40 1598 1603 10.1016/j.enzmictec.2006.11.008 1:CAS:528:DC%2BD2sXjsleiurw%3D (Pubitemid 46482648)
    • (2007) Enzyme and Microbial Technology , vol.40 , Issue.6 , pp. 1598-1603
    • Alves, L.1    Melo, M.2    Mendonca, D.3    Simoes, F.4    Matos, J.5    Tenreiro, R.6    Girio, F.M.7
  • 3
    • 0041527241 scopus 로고    scopus 로고
    • Identification and application of plasmids suitable for transfer of foreign DNA to members of the genus Gordonia
    • DOI 10.1128/AEM.69.8.4971-4974.2003
    • M Arenskötter D Baumeister R Kalscheuer A Steinbüchel 2003 Identification and application of plasmids suitable for transfer of foreign DNA to members of the genus Gordonia Appl Environ Microbiol 69 4971 4974 10.1128/AEM.69.8.4971-4974.2003 (Pubitemid 36992963)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.8 , pp. 4971-4974
    • Arenskotter, M.1    Baumeister, D.2    Kalscheuer, R.3    Steinbuchel, A.4
  • 4
    • 34247869701 scopus 로고    scopus 로고
    • Dibenzothiophene biodesulfurization in resting cell conditions by aerobic bacteria
    • DOI 10.1016/j.bej.2007.01.013, PII S1369703X07000198
    • A Caro K Boltes LP Calvo 2007 Dibenzothiophene biodesulfurization in resting cell conditions by aerobic bacteria Biochem Eng J 35 191 197 10.1016/j.bej.2007.01.013 1:CAS:528:DC%2BD2sXlt1Sitb8%3D (Pubitemid 46702780)
    • (2007) Biochemical Engineering Journal , vol.35 , Issue.2 , pp. 191-197
    • Caro, A.1    Boltes, K.2    Leton, P.3    Garcia-Calvo, E.4
  • 5
    • 44449149696 scopus 로고    scopus 로고
    • Elucidation of 2-hydroxybiphenyl effect on dibenzothiophene desulfurization by Microbacterium sp. strain ZD-M2
    • 10.1016/j.biortech.2008.01.033 1:CAS:528:DC%2BD1cXms1ygu7s%3D
    • H Chen W Zhang Y Cai Y Zhang W Li 2008 Elucidation of 2-hydroxybiphenyl effect on dibenzothiophene desulfurization by Microbacterium sp. strain ZD-M2 Bioresour Technol 99 6928 6933 10.1016/j.biortech.2008.01.033 1:CAS:528:DC%2BD1cXms1ygu7s%3D
    • (2008) Bioresour Technol , vol.99 , pp. 6928-6933
    • Chen, H.1    Zhang, W.2    Cai, Y.3    Zhang, Y.4    Li, W.5
  • 6
    • 0031761990 scopus 로고    scopus 로고
    • Characterization of the basic replicon of Rhodococcus plasmid pSOX and development of a Rhodococcus-Escherichia coli shuttle vector
    • 1:CAS:528:DyaK1cXnt1Wqtb4%3D
    • C Denis-Larose H Bergeron D Labbe CW Greer J Hawari MJ Grossman BM Sankey PCK Lau 1998 Characterization of the basic replicon of Rhodococcus plasmid pSOX and development of a Rhodococcus-Escherichia coli shuttle vector Appl Environ Microbiol 64 4363 4367 1:CAS:528:DyaK1cXnt1Wqtb4%3D
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4363-4367
    • Denis-Larose, C.1    Bergeron, H.2    Labbe, D.3    Greer, C.W.4    Hawari, J.5    Grossman, M.J.6    Sankey, B.M.7    Lau, P.C.K.8
  • 7
    • 0027996697 scopus 로고
    • Characterization of the desulfurization genes from Rhodococcus sp. strain IGTS8
    • 1:CAS:528:DyaK2MXhvV2nt78%3D
    • SA Denome C Oldfield LJ Nash KD Young 1994 Characterization of the desulfurization genes from Rhodococcus sp. strain IGTS8 J Bacteriol 176 6707 6716 1:CAS:528:DyaK2MXhvV2nt78%3D
    • (1994) J Bacteriol , vol.176 , pp. 6707-6716
    • Denome, S.A.1    Oldfield, C.2    Nash, L.J.3    Young, K.D.4
  • 8
    • 33750820436 scopus 로고    scopus 로고
    • CDNA cloning, expression and homology modeling of luciferase from the firefly Lampyroidea maculata
    • 1:CAS:528:DC%2BD28XhtFWqsbrP
    • A Emamzadeh S Hosseinkhani M Sadeghizadeh M Nikkhah MJ Chaichi M Mortazavi 2006 cDNA cloning, expression and homology modeling of luciferase from the firefly Lampyroidea maculata J Biochem Mol Biolo 39 578 585 1:CAS:528:DC%2BD28XhtFWqsbrP
    • (2006) J Biochem Mol Biolo , vol.39 , pp. 578-585
    • Emamzadeh, A.1    Hosseinkhani, S.2    Sadeghizadeh, M.3    Nikkhah, M.4    Chaichi, M.J.5    Mortazavi, M.6
  • 9
    • 0030728972 scopus 로고    scopus 로고
    • Designing recombinant Pseudomonas strains to enhance biodesulfurization
    • 1:CAS:528:DyaK2sXntlKku74%3D
    • ME Gallardo A Ferrandez VD Lorenzo JL Garcia E Diaz 1997 Designing recombinant Pseudomonas strains to enhance biodesulfurization J Bacteriol 179 7156 7160 1:CAS:528:DyaK2sXntlKku74%3D
    • (1997) J Bacteriol , vol.179 , pp. 7156-7160
    • Gallardo, M.E.1    Ferrandez, A.2    Lorenzo, V.D.3    Garcia, J.L.4    Diaz, E.5
  • 10
    • 0037589955 scopus 로고    scopus 로고
    • Biodesulfurization of fossil fuels
    • DOI 10.1016/S1369-5274(03)00065-1
    • KA Gray GT Mrachko CH Squires 2003 Biodesulfurization of fossil fuels Curr Opin Microbiol 6 229 235 10.1016/S1369-5274(03)00065-1 1:CAS:528: DC%2BD3sXkvVKgurs%3D (Pubitemid 36841665)
    • (2003) Current Opinion in Microbiology , vol.6 , Issue.3 , pp. 229-235
    • Gray, K.A.1    Mrachkott, G.T.2    Squires, C.H.3
  • 11
    • 12144251399 scopus 로고    scopus 로고
    • Biotechnology of desulfurization of diesel: Prospects and challenges
    • DOI 10.1007/s00253-004-1755-7
    • N Gupta PK Roychoudhury JK Deb 2005 Biotechnology of desulfurization of diesel: prospects and challenges Appl Microbiol Biotechnol 66 356 366 10.1007/s00253-004-1755-7 1:CAS:528:DC%2BD2cXhtVKrurzK (Pubitemid 40110139)
    • (2005) Applied Microbiology and Biotechnology , vol.66 , Issue.4 , pp. 356-366
    • Gupta, N.1    Roychoudhury, P.K.2    Deb, J.K.3
  • 12
    • 0035258448 scopus 로고    scopus 로고
    • Improvement of desulfurization activity in Rhodococcus erythropolis KA2-5-1 by genetic engineering
    • DOI 10.1271/bbb.65.239
    • K Hirasawa Y Ishii M Kobayashi K Koizumi 2001 Improvement of desulfurizing activity in Rhodococcus erythropolis KA2-5-1 by genetic engineering Biosci Biotechnol Biochem 65 239 246 10.1271/bbb.65.239 1:CAS:528:DC%2BD3MXhslKgt78%3D (Pubitemid 33626232)
    • (2001) Bioscience, Biotechnology and Biochemistry , vol.65 , Issue.2 , pp. 239-246
    • Hirasawa, K.1    Ishii, Y.2    Kobayashi, M.3    Koizumi, K.4    Maruhashi, K.5
  • 13
    • 0002437293 scopus 로고    scopus 로고
    • Operon structure and functional analysis of the genes encoding thermophilic desulfurizing enzymes of Paenibacillus sp. A11-2
    • DOI 10.1006/bbrc.2000.2370
    • Y Ishii J Konishi H Okada K Hirasawa T Onaka M Suzuki 2000 Operon structure and functional analysis of the genes encoding thermophilic desulfurizing enzymes of Paenibacillus sp. A11-2 Biochem Biophys Res Commun 270 81 88 10.1006/bbrc.2000.2370 1:CAS:528:DC%2BD3cXhvFCmtLg%3D (Pubitemid 30440396)
    • (2000) Biochemical and Biophysical Research Communications , vol.270 , Issue.1 , pp. 81-88
    • Ishii, Y.1    Konishi, J.2    Okada, H.3    Hirasawa, K.4    Onaka, T.5    Suzuki, M.6
  • 14
    • 33744923431 scopus 로고    scopus 로고
    • Microbial biocatalyst developments to upgrade fossil fuels
    • DOI 10.1016/j.copbio.2006.04.005, PII S0958166906000577, Environmental Biotechnology/Energy Biotechnology
    • JJ Kilbane 2006 Microbial biocatalyst development to upgrade fossil fuels Curr Opin Biotechnol 17 305 314 10.1016/j.copbio.2006.04.005 1:CAS:528:DC%2BD28Xls1akt7c%3D (Pubitemid 43850256)
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.3 , pp. 305-314
    • Kilbane II, J.J.1
  • 15
    • 34547403662 scopus 로고    scopus 로고
    • Characterization of the dszABC genes of Gordonia amicalis F.5.25.8 and identification of conserved protein and DNA sequences
    • DOI 10.1007/s00253-007-0895-y
    • JJ Kilbane J Robbins 2007 Characterization of the dszABC genes of Gordonia amicalis F.5.25.8 and identification of conserved protein and DNA sequences Appl Microbiol Biotechnol 75 843 851 10.1007/s00253-007-0895-y 1:CAS:528:DC%2BD2sXlslClu7k%3D (Pubitemid 47164911)
    • (2007) Applied Microbiology and Biotechnology , vol.75 , Issue.4 , pp. 843-851
    • Kilbane II, J.J.1    Robbins, J.2
  • 16
    • 34247470820 scopus 로고    scopus 로고
    • Improvement of dibenzothiophene desulfurization activity by removing the gene overlap in the dsz operon
    • DOI 10.1271/bbb.60189
    • GQ Li MA Ting SS Li H Li F Liang R Liu 2007 Improvement of dibenzothiophene biodesulfurization activity by removing the gene overlap in the dsz operon Biosci Biotechnol Biochem 71 849 854 10.1271/bbb.60189 1:CAS:528:DC%2BD2sXltFCns7g%3D (Pubitemid 46650950)
    • (2007) Bioscience, Biotechnology and Biochemistry , vol.71 , Issue.4 , pp. 849-854
    • Li, G.-Q.1    Ting, M.A.2    Li, S.-S.3    Li, H.4    Liang, F.-L.5    Liu, R.-L.6
  • 17
    • 39649107143 scopus 로고    scopus 로고
    • Genetic rearrangement strategy for optimizing the dibenzothiophene biodesulfurization pathway in Rhodococcus erythropolis
    • DOI 10.1128/AEM.02319-07
    • GQ Li SS Li H Li ML Zhang J Wang L Zhu F Liang R Liu MA Ting 2008 Genetic rearrangement strategy for optimizing the dibenzothiophene biodesulfurization pathway in Rhodococcus erythropolis Appl Environ Microbiol 74 971 976 10.1128/AEM.02319-07 1:CAS:528:DC%2BD1cXit1yru7s%3D (Pubitemid 351287067)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.4 , pp. 971-976
    • Li, G.-Q.1    Li, S.-S.2    Zhang, M.-L.3    Wang, J.4    Zhu, L.5    Liang, F.-L.6    Liu, R.-L.7    Ma, T.8
  • 18
    • 0029946460 scopus 로고    scopus 로고
    • Genetic analysis of the dsz promoter and associated regulatory regions of Rhodococcus erythropolis IGTS8
    • 1:CAS:528:DyaK28Xmsl2guro%3D
    • ZM Li HS Charles DJ Monticello JD Childs 1996 Genetic analysis of the dsz promoter and associated regulatory regions of Rhodococcus erythropolis IGTS8 J Bacteriol 178 6409 6418 1:CAS:528:DyaK28Xmsl2guro%3D
    • (1996) J Bacteriol , vol.178 , pp. 6409-6418
    • Li, Z.M.1    Charles, H.S.2    Monticello, D.J.3    Childs, J.D.4
  • 19
    • 33846563851 scopus 로고    scopus 로고
    • Analysis of the 7.6-kb cryptic plasmid pNC500 from Rhodococcus rhodochrous B-276 and construction of Rhodococcus-E. coli shuttle vector
    • DOI 10.1007/s00253-006-0660-7
    • T Matsui H Saeki N Shinzato H Matsuda 2007 Analysis of the 7.6-kb cryptic plasmid pNC500 from Rhodococcus rhodochrous B-276 and construction of Rhodococcus-E. coli shuttle vector Appl Microbiol Biotechnol 74 169 175 10.1007/s00253-006-0660-7 (Pubitemid 46183482)
    • (2007) Applied Microbiology and Biotechnology , vol.74 , Issue.1 , pp. 169-175
    • Matsui, T.1    Saeki, H.2    Shinzato, N.3    Matsuda, H.4
  • 20
    • 0033151649 scopus 로고    scopus 로고
    • Biodesulfurization
    • DOI 10.1016/S1369-5274(99)80045-9
    • BL McFarland 1999 Biodesulfurization Curr Opin Microbiol 2 257 264 10.1016/S1369-5274(99)80045-9 1:CAS:528:DyaK1MXkt1Cmsrs%3D (Pubitemid 29260144)
    • (1999) Current Opinion in Microbiology , vol.2 , Issue.3 , pp. 257-264
    • McFarland, B.L.1
  • 21
    • 51149106751 scopus 로고    scopus 로고
    • Biocatalytic desulfurization (BDS) of petrodiesel fuels
    • 10.1099/mic.0.2008/017608-0 1:CAS:528:DC%2BD1cXhtVCrtLbM
    • G Mohebali AS Ball 2008 Biocatalytic desulfurization (BDS) of petrodiesel fuels Microbiology 154 2169 2183 10.1099/mic.0.2008/017608-0 1:CAS:528:DC%2BD1cXhtVCrtLbM
    • (2008) Microbiology , vol.154 , pp. 2169-2183
    • Mohebali, G.1    Ball, A.S.2
  • 22
    • 33847289637 scopus 로고    scopus 로고
    • Biodesulfurization potential of a newly isolated bacterium, Gordonia alkanivorans RIPI90A
    • DOI 10.1016/j.enzmictec.2006.05.012, PII S0141022906002833
    • G Mohebali AS Ball B Rasekh A Keytash 2007 Biodesulfurization potential of a newly isolated bacterium, Gordonia alkanivorans RIPI90A Enzyme Microb Technol 40 578 584 10.1016/j.enzmictec.2006.05.012 1:CAS:528: DC%2BD2sXit1Gksr0%3D (Pubitemid 46329049)
    • (2007) Enzyme and Microbial Technology , vol.40 , Issue.4 , pp. 578-584
    • Mohebali, G.1    Ball, A.S.2    Rasekh, B.3    Kaytash, A.4
  • 23
    • 0033635712 scopus 로고    scopus 로고
    • Biodesulfurization and the upgrading of petroleum distillates
    • 10.1016/S0958-1669(00)00154-3 1:CAS:528:DC%2BD3MXisFGr
    • DJ Monticello 2000 Biodesulfurization and the upgrading of petroleum distillates Curr Opin Biotechnol 11 540 546 10.1016/S0958-1669(00)00154-3 1:CAS:528:DC%2BD3MXisFGr
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 540-546
    • Monticello, D.J.1
  • 24
    • 0030763260 scopus 로고    scopus 로고
    • Elucidation of the metabolic pathway for dibenzothiophene desulphurization by Rhodococcus sp. strain IGTS8 (ATCC 53968)
    • 10.1099/00221287-143-9-2961 1:CAS:528:DyaK2sXmt1yksL8%3D
    • C Oldfield O Pogrebinsky J Simmonds ES Olson CF Kulpa 1997 Elucidation of the metabolic pathway for dibenzothiophene desulphurization by Rhodococcus sp. strain IGTS8 (ATCC 53968) Microbiology 143 2961 2973 10.1099/00221287-143-9-2961 1:CAS:528:DyaK2sXmt1yksL8%3D
    • (1997) Microbiology , vol.143 , pp. 2961-2973
    • Oldfield, C.1    Pogrebinsky, O.2    Simmonds, J.3    Olson, E.S.4    Kulpa, C.F.5
  • 25
    • 0042880672 scopus 로고    scopus 로고
    • Desulfurization of dibenzothiophene and diesel oil by metabolically engineered E. coli
    • 1:CAS:528:DC%2BD3sXnsleis7o%3D
    • SJ Park I Lee YK Chang SY Lee 2003 Desulfurization of dibenzothiophene and diesel oil by metabolically engineered E. coli J Microbial Biotechnol 13 578 583 1:CAS:528:DC%2BD3sXnsleis7o%3D
    • (2003) J Microbial Biotechnol , vol.13 , pp. 578-583
    • Park, S.J.1    Lee, I.2    Chang, Y.K.3    Lee, S.Y.4
  • 26
    • 0028836453 scopus 로고
    • Sequence and molecular characterization of a DNA region encoding the dibenzothiophene desulfurization operon of Rhodococcus sp. strain IGTS8
    • 1:CAS:528:DyaK2MXjsV2lsLY%3D
    • CS Piddington BR Kovacevich J Rambosek 1995 Sequence and molecular characterization of a DNA region encoding the dibenzothiophene desulfurization operon of Rhodococcus sp. strain IGTS8 Appl Environ Microbiol 61 468 475 1:CAS:528:DyaK2MXjsV2lsLY%3D
    • (1995) Appl Environ Microbiol , vol.61 , pp. 468-475
    • Piddington, C.S.1    Kovacevich, B.R.2    Rambosek, J.3
  • 27
    • 2942577563 scopus 로고    scopus 로고
    • Genome walking of large fragments: An improved method
    • DOI 10.1016/j.jbiotec.2004.03.008, PII S0168165604001634
    • AS Rishi ND Nelson A Goyal 2004 Genome walking of large fragments: an improved method J Biotech 111 9 15 10.1016/j.jbiotec.2004.03.008 1:CAS:528:DC%2BD2cXkvVCrtbo%3D (Pubitemid 38757816)
    • (2004) Journal of Biotechnology , vol.111 , Issue.1 , pp. 9-15
    • Rishi, A.S.1    Nelson, N.D.2    Goyal, A.3
  • 30
    • 51349091821 scopus 로고    scopus 로고
    • Biodesulfurization of dibenzothiophene by recombinant Gordonia alkanivorans RIPI90A
    • 10.1016/j.biortech.2008.06.011 1:CAS:528:DC%2BD1cXhtFemtbzI
    • M Shavandi M Sadeghizadeh A Zomorodipour K Khajeh 2009 Biodesulfurization of dibenzothiophene by recombinant Gordonia alkanivorans RIPI90A Bioresour Technol 100 475 479 10.1016/j.biortech.2008.06.011 1:CAS:528:DC%2BD1cXhtFemtbzI
    • (2009) Bioresour Technol , vol.100 , pp. 475-479
    • Shavandi, M.1    Sadeghizadeh, M.2    Zomorodipour, A.3    Khajeh, K.4
  • 31
    • 34648819846 scopus 로고    scopus 로고
    • Biodesulfurization of refractory organic sulfur compounds in fossil fuels
    • DOI 10.1016/j.biotechadv.2007.07.003, PII S0734975007000936
    • M Soleimani A Bassi A Margaritis 2007 Biodesulfurization of refractory organic sulfur compounds in fossil fuels Biotechnol Adv 25 570 596 10.1016/j.biotechadv.2007.07.003 1:CAS:528:DC%2BD2sXhtFSks7zE (Pubitemid 47464851)
    • (2007) Biotechnology Advances , vol.25 , Issue.6 , pp. 570-596
    • Soleimani, M.1    Bassi, A.2    Margaritis, A.3
  • 32
    • 0345286863 scopus 로고    scopus 로고
    • Analysis of the Corynebacterium glutamicum dapA promoter
    • 1:CAS:528:DyaK1MXmsVOrurw%3D
    • P Vasicova M Patek J Nesvera H Sahm B Eikmanns 1999 Analysis of the Corynebacterium glutamicum dapA promoter J Bacteriol 181 6188 6191 1:CAS:528:DyaK1MXmsVOrurw%3D
    • (1999) J Bacteriol , vol.181 , pp. 6188-6191
    • Vasicova, P.1    Patek, M.2    Nesvera, J.3    Sahm, H.4    Eikmanns, B.5
  • 33
    • 33644939941 scopus 로고    scopus 로고
    • Selective biodegradation of S and N heterocycles by a recombinant Rhodococcus erythropolis strain containing carbazole dioxygenase
    • 10.1128/AEM.72.3.2235-2238.2006 1:CAS:528:DC%2BD28XjsFCmtLk%3D
    • B Yu P Xu S Zhu X Cai Y Wang L Li F Li X Liu C Ma 2006 Selective biodegradation of S and N heterocycles by a recombinant Rhodococcus erythropolis strain containing carbazole dioxygenase Appl Environ Microbiol 72 2235 2238 10.1128/AEM.72.3.2235-2238.2006 1:CAS:528:DC%2BD28XjsFCmtLk%3D
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2235-2238
    • Yu, B.1    Xu, P.2    Zhu, S.3    Cai, X.4    Wang, Y.5    Li, L.6    Li, F.7    Liu, X.8    Ma, C.9


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