Analysis of the 7.6-kb cryptic plasmid pNC500 from Rhodococcus rhodochrous B-276 and construction of Rhodococcus-E. coli shuttle vector

Applied Microbiology and Biotechnology

Volumn 74, Issue 1, 2007, Pages 169-175

  Matsui, Toru ^a   Saeki, Hisashi ^b   Shinzato, Naoya ^a   Matsuda, Hitoshi ^b  

^a UNIVERSITY OF THE RYUKYUS   (Japan)

^b Bioresearch Center   (Japan)

Author keywords

Nocardioform; Plasmid; Replication; Rhodococcus; Shuttle vector

Indexed keywords

AMINO ACIDS; CELLS; CYTOLOGY; DNA SEQUENCES; ENZYME KINETICS; ENZYMES;

CRYPTIC PLASMIDS; NOCARDIOFORM; REPLICATION; SHUTTLE VECTORS;

BACTERIA;

DNA METHYLTRANSFERASE; HELICASE;

AMINO ACID; BACTERIUM; DNA; ENZYME; HOMOLOGY; PLASMID; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DNA BINDING; ESCHERICHIA COLI; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PLASMID PNC 500; RHODOCOCCUS; RHODOCOCCUS RHODOCHROUS; SEQUENCE ANALYSIS; SHUTTLE VECTOR;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BIOTECHNOLOGY; DNA REPLICATION; ESCHERICHIA COLI; GENETIC VECTORS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; RHODOCOCCUS; SEQUENCE ANALYSIS, DNA; TRANSFORMATION, BACTERIAL;

BACTERIA (MICROORGANISMS); GORDONIA RUBRIPERTINCTA; RHODOCOCCUS; RHODOCOCCUS OPACUS; RHODOCOCCUS RHODOCHROUS;

EID: 33846563851     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-006-0660-7     Document Type: Article

References (22)

1. Curragh H, Flynn O, Larkin MJ, Stafford TM, Hamilton JT, Harper DB (1994) Haloalkane degradation and assimilation by Rhodococcus rhodochrous NCIMB 13064. Microbiology 140:1433-1442
2. De Mot R, Nagy I, De Schrijver A, Pattanapipitpaisal P, Vanderleyden J (1997) Structural analysis of the 6 kb cryptic plasmid pFAJ2600 from Rhodococcus erythropolis NI86/21 and construction of Escherichia coli-Rhodococcus shuttle vectors. Microbiology 143:3137-3147
3. Denis-Larose C, Labbe D, Bergeron H, Jones AM, Greer CW, Al-Hawari J, Grossman MJ, Sankey BM, Lau PCK (1997) Conservation of plasmid-encoded dibenzothiophene desulfurization genes in several Rhodococci. Appl Environ Microbiol 63:2915-2919
4. Dodd IB, Egan JB (1990) Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res 18:5019-5026
5. Furuhashi K (1992) Biological routes to optically active epoxides. In: Collins AN, Sheldrake GN, Crosby J (eds) Chirality in industry. Wiley, Chichester, pp 167-186
6. Gavigan J-A, Ainsa JA, Perez E, Otal I, Martin C (1997) Isolation by genetic labeling of a new Mycobacterial plasmid, pJAZ38, from Mycobacterium fortuitum. J Bacteriol 179:4115-4122
7. Gomez P, Ribas-Aparicio RM, Pelaez AI, Gomez A, Rodicio MR (1997) Isolation and nucleotide sequence of the gene encoding the XamI DNA methyltransferase of Xanthomonas campestris pv. amaranthicola. Biochim Biophys Acta 1351:261-266
8. Hashimoto Y, Nishiyama M, Yu F, Watanabe I, Horinouchi S, Beppu T (1992) Development of a host-vector system in a Rhodococcus strain and its use for expression of the cloned nitrile hydratase gene cluster. J Gen Microbiol 138:1003-1010
9. Hirasawa K, Ishii Y, Kobayashi M, Koizumi K, Maruhashi K (2001) Improvement of desulfurization activity in Rhodococcus erythropolis KA2-5-1 by genetic engineering. Biosci Biotechnol Biochem 65:239-246
10. Katz E, Thompson CJ, Hopwood DA (1983) Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J Gen Microbiol 129:2703-2714
11. Matsui T, Onaka T, Tanaka Y, Tezuka T, Suzuki M, Kurane R (2000) Alkylated benzothiophene desulfurization by Rhodococcus sp. Strain T09. Biosci Biotechnol Biochem 64:596-599
12. Matsui T, Hirasawa K, Konishi J, Tanaka Y, Maruhashi K, Kurane R (2001) Microbial desulfurization of alkylated dibenzothiophene and alkylated benzothiophene by recombinant Rhodococcus sp. strain T09. Appl Microbiol Biotechnol 56:196-200
13. Matsui T, Saeki H, Shinzato N, Matsuda H (2006) Characterization of a Rhodococcus-E. coli shuttle vector, pNC9501 constructed from the cryptic plasmid of a propene-degradinge bacterium. Curr Microbiol 52:445-448
14. Monticello DJ (2000) Biodesulfurization and the upgrading of petroleum distillates. Curr Opin Biotechnol 11:540-546
15. Pansegrau W, Lanka E (1991) Common sequence motifs in DNA relaxases and nick regions from a variety of DNA transfer systems. Nucleic Acids Res 19:3455
16. Picadeau M, Dantec CL, Vincent V (2000) Analysis of the internal replication region of a mycobacterial linear plasmid. Microbiology 146:305-313
17. Saeki H (1998) Molecular and functional analysis of genes involved in propene degraddation of Nocardia corallina B-276. Ph.D thesis, Georg-August-Universitaet zu Goettingen, Germany
18. Saeki H, Miura A, Furuhashi K, Averhoff B, Gottschalk G (1999) Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Nocardia corallina) B-276. Microbiology 145:1721-1730
19. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
20. Singer ME, Finnerty WR (1988) Construction of an Escherichia coli-Rhocococcus shuttle vector and plasmid transformation in Rhodococcus spp. J Bacteriol 170:638-645
21. Stolt P, Stoker NG (1996) Protein-DNA interactions on the ori region of thee Mycobacterium fortuitum plasmid pAL5000. J Bacteriol 178:6693-6700
22. Yebra MJ, Novella IS, Barbes C, Aparicio JF, Martin CG, Hardisson C, Sanches J (1991) Characterization of Rrh42731, a restriction-modification system of Rhodococcus rhodochrous ATCC 4273 (Nocardia corallina) which recognizes the same sequence as the Streptomyces albus G SalI restriction-modification system. J Gen Microbiol 137:1279-1284