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Volumn 185, Issue 2, 2010, Pages 685-693

The evolutionary dynamics of operon distributions in eukaryote genomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAENORHABDITIS ELEGANS; CIONA INTESTINALIS; EUKARYOTE EVOLUTION; GENE LOSS; GENETIC MODEL; GENOME ANALYSIS; OPERON; PRIORITY JOURNAL; ANIMAL; EUKARYOTE; EUKARYOTIC CELL; EVOLUTION; GENETICS; GENOME; NEMATODE;

EID: 77955499635     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.115766     Document Type: Article
Times cited : (14)

References (39)
  • 1
    • 46149114866 scopus 로고    scopus 로고
    • PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans
    • BATISTA, P. J., J. G. RUBY, J. M. CLAYCOMB, R. CHIANG, N. FAHLGREN et al., 2008 PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Mol. Cell 31: 67-78.
    • (2008) Mol. Cell , vol.31 , pp. 67-78
    • Batista, P.J.1    Ruby, J.G.2    Claycomb, J.M.3    Chiang, R.4    Fahlgren, N.5
  • 3
    • 0037306139 scopus 로고    scopus 로고
    • Caenorhabditis elegans operons: Form and function
    • BLUMENTHAL, T., and K. S. GLEASON, 2003 Caenorhabditis elegans operons: form and function. Nat. Rev. Genet. 4: 112-120.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 112-120
    • Blumenthal, T.1    Gleason, K.S.2
  • 4
    • 0037142086 scopus 로고    scopus 로고
    • A global analysis of Caenorhabditis elegans operons
    • BLUMENTHAL, T., D. EVANS, C. D. LINK, A. GUFFANTI, D. LAWSON et al., 2002 A global analysis of Caenorhabditis elegans operons. Nature 417: 851-854.
    • (2002) Nature , vol.417 , pp. 851-854
    • Blumenthal, T.1    Evans, D.2    Link, C.D.3    Guffanti, A.4    Lawson, D.5
  • 5
    • 0024836563 scopus 로고
    • The population-genetics of Drosophila transposable elements
    • CHARLESWORTH, B., and C. H. LANGLEY, 1989 The population-genetics of Drosophila transposable elements. Annu. Rev. Genet. 23: 251-287.
    • (1989) Annu. Rev. Genet. , vol.23 , pp. 251-287
    • Charlesworth, B.1    Langley, C.H.2
  • 6
    • 33750011953 scopus 로고    scopus 로고
    • The evolution of biased codon and amino acid usage in nematode genomes
    • CUTTER, A. D., J. D. WASMUTH and M. L. BLAXTER, 2006 The evolution of biased codon and amino acid usage in nematode genomes. Mol. Biol. Evol. 23: 2303-2315.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2303-2315
    • Cutter, A.D.1    Wasmuth, J.D.2    Blaxter, M.L.3
  • 7
    • 44649164281 scopus 로고    scopus 로고
    • Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing
    • CUTTER, A. D., J. D. WASMUTH and N. L. WASHINGTON, 2008 Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. Genetics 178: 2093-2104.
    • (2008) Genetics , vol.178 , pp. 2093-2104
    • Cutter, A.D.1    Wasmuth, J.D.2    Washington, N.L.3
  • 8
    • 66249146405 scopus 로고    scopus 로고
    • Evolution of the Caenorhabditis elegans genome
    • CUTTER, A. D., A. DEY and R. L. MURRAY, 2009 Evolution of the Caenorhabditis elegans genome. Mol. Biol. Evol. 26: 1199-1234.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1199-1234
    • Cutter, A.D.1    Dey, A.2    Murray, R.L.3
  • 9
    • 77749245941 scopus 로고    scopus 로고
    • Molecular population genetics and phenotypic sensitivity to ethanol for a globally diverse sample of the nematode Caenorhabditis briggsae
    • CUTTER, A. D., W. YAN, N. TSVETKOV, S. SUNIL and M. A. FELIX, 2010 Molecular population genetics and phenotypic sensitivity to ethanol for a globally diverse sample of the nematode Caenorhabditis briggsae. Mol. Ecol. 19: 798-809.
    • (2010) Mol. Ecol. , vol.19 , pp. 798-809
    • Cutter, A.D.1    Yan, W.2    Tsvetkov, N.3    Sunil, S.4    Felix, M.A.5
  • 10
    • 46149092009 scopus 로고    scopus 로고
    • Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline
    • DAS, P. P., M. P. BAGIJN, L. D. GOLDSTEIN, J. R. WOOLFORD, N. J. LEHRBACH et al., 2008 Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. Mol. Cell 31: 79-90.
    • (2008) Mol. Cell , vol.31 , pp. 79-90
    • Das, P.P.1    Bagijn, M.P.2    Goldstein, L.D.3    Woolford, J.R.4    Lehrbach, N.J.5
  • 11
    • 2242464840 scopus 로고    scopus 로고
    • The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
    • DEHAL, P., Y. SATOU, R. K. CAMPBELL, J. CHAPMAN, B. DEGNAN et al., 2002 The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298: 2157-2167.
    • (2002) Science , vol.298 , pp. 2157-2167
    • Dehal, P.1    Satou, Y.2    Campbell, R.K.3    Chapman, J.4    Degnan, B.5
  • 13
    • 0030886016 scopus 로고    scopus 로고
    • Operons and SL2 trans-splicing exist in nematodes outside the genus Caenorhabditis
    • EVANS, D., D. ZORIO, M. MACMORRIS, C. E. WINTER, K. LEA et al., 1997 Operons and SL2 trans-splicing exist in nematodes outside the genus Caenorhabditis. Proc. Natl. Acad. Sci. USA 94: 9751-9756.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9751-9756
    • Evans, D.1    Zorio, D.2    Macmorris, M.3    Winter, C.E.4    Lea, K.5
  • 14
    • 34648839863 scopus 로고    scopus 로고
    • Operon conservation and the evolution of trans-splicing in the phylum Nematoda
    • GUILIANO, D. B., and M. L. BLAXTER, 2006 Operon conservation and the evolution of trans-splicing in the phylum Nematoda. PLoS Genet. 2: e198.
    • (2006) PLoS Genet. , vol.2
    • Guiliano, D.B.1    Blaxter, M.L.2
  • 15
    • 63649147139 scopus 로고    scopus 로고
    • Caenorhabditis nematodes as a model for the adaptive evolution of germ cells
    • HAAG, E. S., 2009 Caenorhabditis nematodes as a model for the adaptive evolution of germ cells. Curr. Top. Dev. Biol. 86: 43-66.
    • (2009) Curr. Top. Dev. Biol. , vol.86 , pp. 43-66
    • Haag, E.S.1
  • 16
    • 34547137683 scopus 로고    scopus 로고
    • Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny
    • HILLIER, L. W., R. D. MILLER, S. E. BAIRD, A. CHINWALLA, L. A. FULTON et al., 2007 Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny. PLoS Biol. 5: e167.
    • (2007) PLoS Biol. , vol.5
    • Hillier, L.W.1    Miller, R.D.2    Baird, S.E.3    Chinwalla, A.4    Fulton, L.A.5
  • 17
    • 34948897640 scopus 로고    scopus 로고
    • Identification and analysis of internal promoters in Caenorhabditis elegans operons
    • HUANG, P., E. D. PLEASANCE, J. S. MAYDAN, R. HUNT-NEWBURY, N. J. O'NEIL et al., 2007 Identification and analysis of internal promoters in Caenorhabditis elegans operons. Genome Res. 17: 1478-1485.
    • (2007) Genome Res. , vol.17 , pp. 1478-1485
    • Huang, P.1    Pleasance, E.D.2    Maydan, J.S.3    Hunt-Newbury, R.4    O'Neil, N.J.5
  • 18
    • 36849045088 scopus 로고    scopus 로고
    • Controls of germline stem cells, entry into meiosis, and the sperm/oocyte decision in Caenorhabditis elegans
    • KIMBLE, J., and S. L. CRITTENDEN, 2007 Controls of germline stem cells, entry into meiosis, and the sperm/oocyte decision in Caenorhabditis elegans. Annu. Rev. Cell Dev. Biol. 23: 405-433.
    • (2007) Annu. Rev. Cell Dev. Biol. , vol.23 , pp. 405-433
    • Kimble, J.1    Crittenden, S.L.2
  • 19
    • 0346095398 scopus 로고    scopus 로고
    • Operon structure and trans-splicing in the nematode Pristionchus pacificus
    • LEE, K. Z., and R. J. SOMMER, 2003 Operon structure and trans-splicing in the nematode Pristionchus pacificus. Mol. Biol. Evol. 20: 2097-2103.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 2097-2103
    • Lee, K.Z.1    Sommer, R.J.2
  • 20
    • 0037315946 scopus 로고    scopus 로고
    • Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes
    • LERCHER, M. J., T. BLUMENTHAL and L. D. HURST, 2003 Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes. Genome Res. 13: 238-243.
    • (2003) Genome Res. , vol.13 , pp. 238-243
    • Lercher, M.J.1    Blumenthal, T.2    Hurst, L.D.3
  • 21
    • 0037197986 scopus 로고    scopus 로고
    • Intron evolution as a population-genetic process
    • LYNCH, M., 2002 Intron evolution as a population-genetic process. Proc. Natl. Acad. Sci. USA 99: 6118-6123.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6118-6123
    • Lynch, M.1
  • 23
    • 0037270015 scopus 로고    scopus 로고
    • The evolutionary demography of duplicate genes
    • LYNCH, M., and J. S. CONERY, 2003 The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics 3: 35-44.
    • (2003) J. Struct. Funct. Genomics , vol.3 , pp. 35-44
    • Lynch, M.1    Conery, J.S.2
  • 24
    • 53249143880 scopus 로고    scopus 로고
    • 3′ UTRs are the primary regulators of gene expression in the C. elegans germline
    • MERRITT, C., D. RASOLOSON, D. KO and G. SEYDOUX, 2008 3′ UTRs are the primary regulators of gene expression in the C. elegans germline. Curr. Biol. 18: 1476-1482.
    • (2008) Curr. Biol. , vol.18 , pp. 1476-1482
    • Merritt, C.1    Rasoloson, D.2    Ko, D.3    Seydoux, G.4
  • 25
    • 39149119250 scopus 로고    scopus 로고
    • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
    • MICHALAK, P., 2008 Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. Genomics 91: 243-248.
    • (2008) Genomics , vol.91 , pp. 243-248
    • Michalak, P.1
  • 26
    • 41649110311 scopus 로고    scopus 로고
    • Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
    • PETTITT, J., B. MÜLLER, I. STANSFIELD and B. CONNOLLY, 2008 Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders. RNA 14: 760-770.
    • (2008) RNA , vol.14 , pp. 760-770
    • Pettitt, J.1    Müller, B.2    Stansfield, I.3    Connolly, B.4
  • 27
    • 40449135073 scopus 로고    scopus 로고
    • Evolutionary dynamics of nematode operons: Easy come, slow go
    • QIAN, W., and J. ZHANG, 2008 Evolutionary dynamics of nematode operons: easy come, slow go. Genome Res. 18: 412-421.
    • (2008) Genome Res. , vol.18 , pp. 412-421
    • Qian, W.1    Zhang, J.2
  • 28
    • 70149113077 scopus 로고    scopus 로고
    • R DEVELOPMENT CORE TEAM, Reference Index Version 2.10.1. Foundation for Statistical Computing, Vienna
    • R DEVELOPMENT CORE TEAM, 2009 R: A Language and Environment for Statistical Computing, Reference Index Version 2.10.1. Foundation for Statistical Computing, Vienna.
    • (2009) R: A Language and Environment for Statistical Computing
  • 29
    • 67650324308 scopus 로고    scopus 로고
    • Germline expression influences operon organization in the Caenorhabditis elegans genome
    • REINKE, V., and A. D. CUTTER, 2009 Germline expression influences operon organization in the Caenorhabditis elegans genome. Genetics 181: 1219-1228.
    • (2009) Genetics , vol.181 , pp. 1219-1228
    • Reinke, V.1    Cutter, A.D.2
  • 30
    • 0842344618 scopus 로고    scopus 로고
    • Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans
    • REINKE, V., I. S. GIL, S. WARD and K. KAZMER, 2004 Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development 131: 311-323.
    • (2004) Development , vol.131 , pp. 311-323
    • Reinke, V.1    Gil, I.S.2    Ward, S.3    Kazmer, K.4
  • 31
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • RUBY, J. G., C. JAN, C. PLAYER, M. J. AXTELL, W. LEE et al., 2006 Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5
  • 32
    • 33746207803 scopus 로고    scopus 로고
    • Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis
    • SATOU, Y., M. HAMAGUCHI, K. TAKEUCHI, K. E. M. HASTINGS and N. SATOH, 2006 Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis. Nucleic Acids Res. 34: 3378-3388.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3378-3388
    • Satou, Y.1    Hamaguchi, M.2    Takeuchi, K.3    Hastings, K.E.M.4    Satoh, N.5
  • 33
    • 55349149407 scopus 로고    scopus 로고
    • Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: New insight into intron and operon populations
    • SATOU, Y., K. MINETA, M. OGASAWARA, Y. SASAKURA, E. SHOGUCHI et al., 2008 Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations. Genome Biol. 9: R152.
    • (2008) Genome Biol. , vol.9
    • Satou, Y.1    Mineta, K.2    Ogasawara, M.3    Sasakura, Y.4    Shoguchi, E.5
  • 35
    • 0027166660 scopus 로고
    • Operons in C. elegans: Polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions
    • SPIETH, J., G. BROOKE, S. KUERSTEN, K. LEA and T. BLUMENTHAL, 1993 Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions. Cell 73: 521-532.
    • (1993) Cell , vol.73 , pp. 521-532
    • Spieth, J.1    Brooke, G.2    Kuersten, S.3    Lea, K.4    Blumenthal, T.5
  • 36
    • 4243088097 scopus 로고    scopus 로고
    • The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
    • STEIN, L. D., Z. BAO, D. BLASIAR, T. BLUMENTHAL, M. R. BRENT et al., 2003 The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1: 166-192.
    • (2003) PLoS Biol. , vol.1 , pp. 166-192
    • Stein, L.D.1    Bao, Z.2    Blasiar, D.3    Blumenthal, T.4    Brent, M.R.5
  • 37
    • 23744446773 scopus 로고    scopus 로고
    • Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
    • VINSON, J. P., D. B. JAFFE, K. O'NEILL, E. K. KARLSSON, N. STANGE-THOMANN et al., 2005 Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Res. 15: 1127-1135.
    • (2005) Genome Res. , vol.15 , pp. 1127-1135
    • Vinson, J.P.1    Jaffe, D.B.2    O'Neill, K.3    Karlsson, E.K.4    Stange-Thomann, N.5
  • 38
    • 45449118682 scopus 로고    scopus 로고
    • A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis
    • WANG, G., and V. REINKE, 2008 A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis. Curr. Biol. 18: 861-867.
    • (2008) Curr. Biol. , vol.18 , pp. 861-867
    • Wang, G.1    Reinke, V.2
  • 39
    • 0028033820 scopus 로고
    • Operons as a common form of chromosomal organization in C. elegans
    • ZORIO, D. A., N. N. CHENG, T. BLUMENTHAL and J. SPIETH, 1994 Operons as a common form of chromosomal organization in C. elegans. Nature 372: 270-272.
    • (1994) Nature , vol.372 , pp. 270-272
    • Zorio, D.A.1    Cheng, N.N.2    Blumenthal, T.3    Spieth, J.4


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