Characterization of two recessive genes controlling resistance to all races of bacterial spot in peppers

Theoretical and Applied Genetics

Volumn 121, Issue 1, 2010, Pages 37-46

  Vallejos, C Eduardo ^a   Jones, Valerie ^a   Stall, Robert E ^a   Jones, Jeffrey B ^a   Minsavage, Gerald V ^a   Schultz, Diana C ^a   Rodrigues, Rosana ^b   Olsen, Lisa E ^a   Mazourek, Michael ^c  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSIDADE ESTADUAL DO NORTE FLUMINENSE DARCY RIBEIRO   (Brazil)

^c Cornell University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIVE GENES; AFLP MARKERS; BREEDING LINES; CAPSICUM ANNUUM; COMMERCIAL CULTIVARS; DAMAGING DISEASE; DISEASE DEVELOPMENT; EFFECTOR GENES; EPISTATIC INTERACTIONS; GENETIC MANIPULATIONS; HIGH MUTATION RATE; HIGH TEMPERATURE; RESISTANCE GENES; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; SPECIFIC PRIMERS; TROPICAL REGIONS; XANTHOMONAS;

BACTERIOLOGY; GENES;

PLANTS (BOTANY);

BACTERIA (MICROORGANISMS); CAPSICUM; CAPSICUM ANNUUM; XANTHOMONAS; XANTHOMONAS VESICATORIA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; GENETIC LINKAGE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; IMMUNOLOGY; INNATE IMMUNITY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PEPPER; PLANT DISEASE; PLANT GENE; PLANT LEAF; RECESSIVE GENE; XANTHOMONAS;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BASE SEQUENCE; CAPSICUM; GENES, PLANT; GENES, RECESSIVE; GENETIC MARKERS; IMMUNITY, INNATE; LINKAGE (GENETICS); MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLANT LEAVES; POLYMORPHISM, GENETIC; XANTHOMONAS;

EID: 77955488051     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1289-6     Document Type: Article

References (49)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Basim H, Minsavage GV, Stall RE, Wang J-F, Shanker S, Jones JB (2005) Characterization of a unique chromosomal copper resistance gene cluster from Xanthomonas campestris pv. vesicatoria. Appl Environ Microbiol 71: 8284-8291.
3. Ben-Chaim A, Borovsky Y, Falise M, Mazourek M, Kang BC, Paran I, Jahn M (2006) QTL analysis for capsaicinoid content in Capsicum. Theor Appl Genet 113: 1481-1490.
4. Chu Z, Yuan M, Yao J, Ge X, Yuan B, Xu C, Li X, Fu B, Li Z, Bennetzen JL, Zhang Q, Wang S (2006) Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Gene Dev 20: 1250-1255.
5. Cook AA, Guevara YG (1984) Hypersensitivity in Capsicum chacoense to race 1 of the bacterial spot pathogen of pepper. Plant Dis 68: 329-330.
6. Cook AA, Stall RE (1963) Inheritance of resistance in pepper to bacterial spot. Phytopathology 53: 1060-1062.
7. Dahlbeck D, Stall RE (1979) Mutations for change of race in cultures of Xanthomonas vesicatoria. Phytopathology 69: 634-636.
8. Diaz-Pendon JA, Truniger V, Nieto C, Garcia-Mas J, Bendahmane A, Aranda MA (2004) Advances in understanding recessive resistance to plant viruses. Mol Plant Pathol 5: 223-233.
9. Gassmann W, Dahlbeck D, Chesnokova O, Minsavage GV, Jones JB, Staskawicz BJ (2000) Molecular evolution of virulence in natural field strains of Xanthomonas campestris pv. vesicatoria. J Bacteriol 182: 7053-7059.
10. Grant SR, Fisher EJ, Chang JH, Mole BM, Dangl JL (2006) Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria. Annu Rev Microbiol 60: 425-449.
11. Iyer AS, McCouch SR (2004) The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance. Mol Plant Microbe Interact 17: 1348-1354.
12. Iyer-Pascuzzi AS, McCouch SR (2007) Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. Mol Plant Microbe Interact 20: 731-739.
13. Jones JDG, Dangl JL (2006) The plant immune system. Nature 444: 323-329.
14. Jones JB, Pohronezny K, Stall RE, Jones JP (1986) Survival of Xanthomonas campestris pv. vesicatoria in Florida on crop residue, weeds, and volunteer tomato plants. Phytopathology 76: 430-434.
15. Jones JB, Minsavage GV, Roberts PD, Johnson RR, Kousik CS, Subramanian S, Stall RE (2002) A non-hypersensitive resistance in pepper to the bacterial spot pathogen is associated with two recessive genes. Phytopathology 92: 273-277.
16. Jones JB, Lacy GH, Bouzar H, Stall RE, Schaad NW (2004) Reclassification of the xanthomonads associated with bacterial spot disease of tomato and pepper. Syst Appl Microbiol 27: 755-762.
17. Jørgensen JH (1992) Discovery, characterization and exploitation of Mlo powdery mildew resistance in barley. Euphytica 63: 141-152.
18. Kang B-C, Yeam I, Frantz JD, Murphy JF, Jahn MM (2005) The pvr1 locus in pepper encodes a translation initiation factor eIF4E that interacts with Tobacco etch virus VPg. Plant J 42: 392-405.
19. Kim BS, Hartmann RW (1985) Inheritance of a gene (Bs3) conferring hypersensitive resistance to Xanthomonas campestris pv. vesicatoria in pepper (Capsicum annuum). Plant Dis 69: 233-235.
20. Kousik CS, Ritchie DE (1999) Development of bacterial spot on near-isogenic lines of bell pepper carrying gene pyramids composed of defeated major resistance genes. Phytopathology 89: 1066-1072.
21. Kwok S, Kellogg DE, McKinney N, Spasic D, Godal L, Levenson C, Sninsky JJ (1990) Effects of primer -template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res 18: 999-1005.
22. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
23. Lincoln SE, Daly M, Lander ES (1992) Constructing genetic maps with MAPMAKER/EXP 3. 0. Whitehead Institute Technical Report, 3rd edn. Whitehead Technical Institute, Cambridge.
24. Livingstone KD, Lackney VK, Blauth JR, van Wijk R, Jahn MK (1999) Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics 152: 1183-1202.
25. Marco GM, Stall RE (1983) Control of bacterial spot of pepper initiated by strains of Xanthomonas campestris pv. vesicatoria that differ in sensitivity to copper. Plant Dis 67: 779-781.
26. McCarter SM (1992) Effects of bactericide treatments on bacterial spot severity and yield of different genotypes and on populations of certain insects. Plant Dis 76: 1042-1045.
27. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88: 9828-9832.
28. Min W-K, Han J-H, Kang W-H, Lee H-R, Kim B-D (2008) Reverse random amplified microsatellite polymorphism reveals enhanced polymorphisms in the 3′ end of simple sequence repeats in the pepper genome. Mol Cells 26: 250-257.
29. Minsavage GV, Dahlbeck D, Whalen MC, Kearney B, Bonas U, Staskawicz BJ, Stall RE (1990) Gene-for-gene relationships specifying disease resistance in Xanthomonas campestris pv. vesicatoria-pepper interactions. Mol Plant Microbe Interact 3: 41-47.
30. Mueller LA, Solow TH, Skwarecki B, Taylor N, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD (2005) The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond. Plant Physiol 138: 1310-1317.
31. Nakayama RM, Matta FB (1985) "NuMex R Naky" chile pepper. HortSci 20: 961-962.
32. Nicaise V, German-Retana S, Sanjuan R, Dubrana MP, Mazier M, Maisonneuve B, Candresse T, Caranta C, LeGall O (2003) The eukaryotic translation initiation factor 4E controls lettuce susceptibility to the potyvirus Lettuce mosaic virus. Plant Physiol 132: 1272-1282.
33. Pohronezny K, Moss MA, Dankers W, Schenk J (1990) Dispersal and management of Xanthomonas-campestris pv. vesicatoria during thinning of direct-seeded tomato. Plant Dis 74: 800-805.
34. Prince JP, Pochard E, Tanksley SD (1993) Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome 36: 404-417.
35. Prince JP, Zhang Y, Radwanski ER, Kyle MM (1997) A high-yielding and versatile DNA extraction protocol for capsicum. HortSci 32: 937-939.
36. Ritchie DF, Dittapongpitch V (1991) Copper-and streptomycin-resistant strains and host differentiated races of Xanthomonas campestris pv. vesicatoriai in North Carolina. Plant Dis 75: 733-736.
37. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386.
38. Ruffel S, Dussault MH, Palloix A, Moury B, Bendahmane A, Robaglia C, Caranta C (2002) A natural recessive resistance gene against Potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E). Plant J 32: 1067-1075.
39. Sahin F, Miller SA (1998) Resistance in Capsicum pubescens to Xanthomonas campestris pv. vesicatoria pepper race 6. Plant Dis 82: 794-799.
40. Stall RE, Thayer PL (1962) Streptomycin resistance of the bacterial spot pathogen and control with streptomycin. Plant Dis Rep 46: 389-392.
41. Swords KMM, Dahlbeck D, Kearney B, Roy M, Staskawicz BJ (1996) Spontaneous and induced mutations in a single open reading frame to both virulence and avirulence in Xanthomonas campestris pv. vesicatoriaavrBs2. J Bacteriol 178: 4661-4669.
42. Tanksley SD, Ganal MW, Prince JP, de-Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132: 1141-1160.
43. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
44. Vallejos CE (2007) An expedient and versatile protocol for extracting high-quality plant DNA. Cold Spring Harbor Protocols. doi: 10. 1101/pdb. prot4765. http://www. cshprotocols. org/.
45. Vallejos CE, Sakiyama NS, Chase CD (1992) A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 131: 733-740.
46. Vallejos CE, Malandro JJ, Sheehy K, Zimmermann MJ (2000) Detection and cloning of expressed sequences linked to a target gene. Theor Appl Genet 101: 1109-1113.
47. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP -A new technique for DNA-fingerprinting. Nucleic Acids Res 23: 4407-4414.
48. Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD (2009) A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum. Theor Appl Genet 118: 1279-1293.
49. Young ND, Zamir D, Ganal MW, Tanksley SD (1988) Use of isogenic lines and simultaneous probing to identify DNA markers tightly linked to the Tm-2a gene in tomato. Genetics 120: 579-585.