Multi-chamber PCR chip with simple liquid introduction utilizing the gas permeability of polydimethylsiloxane

Sensors and Actuators, B: Chemical

Volumn 149, Issue 1, 2010, Pages 284-290

  Trung, Nguyen Ba ^a   Saito, Masato ^b   Takabayashi, Haruo ^c   Viet, Pham Hung ^d   Tamiya, Eiichi ^b   Takamura, Yuzuru ^a  

^a JAPAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c KANAZAWA MEDICAL UNIVERSITY   (Japan)

^d VIETNAM NATIONAL UNIVERSITY   (Viet Nam)

Author keywords

Bubble elimination; Evaporation suppression; Fluid manipulation; PCR in chip; PDMS gas permeability

Indexed keywords

BUBBLE ELIMINATION; CHIP DEVICES; GENETIC MATERIALS; HIGH-THROUGHPUT; IN-CHIP; LIQUID SAMPLE; MICRO PUMP; MICROMIXERS; MULTI-CHAMBER; MULTITARGET; ON CHIPS; PARALLEL TESTING; PCR CHIPS; PCR IN CHIP; POLYDIMETHYLSILOXANE PDMS; REACTION CHAMBERS; SIMPLE LIQUIDS; TRAPPED BUBBLE;

AMPLIFICATION; BUBBLE FORMATION; EVAPORATION; GLYCEROL; LIQUIDS; MATERIALS TESTING; MICROCHANNELS; MICROLENSES; POLYMERASE CHAIN REACTION; PUMPS; SILICONES;

GAS PERMEABILITY;

EID: 77955470918     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2010.06.013     Document Type: Article

References (37)

1. K.W. Oh, C. Park, K. Namkoong, J. Kim, K.S. Ock, S. Kim, Y.A. Kim, Y.K. Cho, and C. Ko World-to-chip microfluidic interface with built-in valves for multi-chamber chip-based PCR assays Lab Chip 5 2005 845 850
2. R. Prakash, and K.V.I.S. Kaler An integrated genetic analysis microfluidic platform with valves and a PCR chip reusability method to avoid contamination Microfluid. Nanofluid. 3 2007 177 187
3. Y.K. Cho, J. Kim, Y. Lee, Y.A. Kim, K. Namkoong, H. Lim, K.W. Oh, S. Kim, J. Han, C. Park, Y.E. Pak, C.S. Ki, J.R. Choi, H.K. Myeong, and C. Ko Clinical evaluation of micro-scale chip-based PCR system for rapid detection of hepatitis B virus Biosens. Bioelectron. 21 2006 2161 2169
4. R. Pal, M. Yang, R. Lin, B.N. Johnson, N. Srivastava, S.Z. Razzacki, K.J. Chomistek, D.C. Heldsinger, R.M. Haque, V.M. Ugaz, P.K. Thwar, Z. Chen, K. Alfano, M.B. Yim, M. Krishnan, A.O. Fuller, R.G. Larson, D.T. Burke, and M.A. Burns An integrated microfluidic device for influenza and other genetic analyses Lab Chip 5 2005 1024 1032
5. G.V. Kaigala, R.J. Huskins, J. Preiksaitis, X. Pang, L.M. Pilarski, and C.J. Backhouse Automated screening using microfluidic chip-based PCR and product detection to assess risk of BK virus-associated nephropathy in renal transplant recipients Electrophoresis 27 2006 3753 3763
6. C. Liao, G. Lee, J. Wu, C. Chang, T. Hsiehe, F. Huang, and C. Luo Micromachined polymerase chain reaction system for multiple DNA amplification of upper respiratory tract infectious diseases Biosens. Bioelectron. 20 2005 1341 1348
7. M. Hashimoto, F. Barany, and S.A. Soper Polymerase chain reaction/ligase detection reaction/hybridization assays using flow-through microfluidic devices for the detection of low-abundant DNA point mutations Biosens. Bioelectron. 21 2006 1915 1923
8. M.U. Ahmed, K. Idegami, M. Chikae, K. Kerman, P. Chaumpluk, S. Yamamura, and E. Tamiya Electrochemical DNA biosensor using a disposable electrochemical printed (DEP) chip for the detection of SNPs from unpurified PCR amplicons Analyst 132 2007 431 438
9. N.M. Toriello, C.N. Liu, and R.A. Mathies Multichannel reverse transcription-polymerase chain reaction microdevice for rapid gene expression and biomarker analysis Anal. Chem. 78 2006 7997 8003
10. T. Morrison, J. Hurley, J. Garcia, K. Yoder, A. Katz, D. Roberts, and J. Cho Nanoliter high throughput quantitative PCR Nucleic Acids Res. 34 2006 e123
11. E.A. Ottesen, J.W. Hong, S.R. Quake, and J.R. Leadbetter Microfluidic digital PCR enables multigene analysis of individual environmental bacteria Science 134 2006 1464 1467
12. C. Zhang, and D. Xing Miniaturized PCR chips for nucleic acid amplification and analysis: latest advances and future trends Nucleic Acids Res. 35 2007 4223 4237
13. M.A. Northrup, M.T. Ching, R.M. White, and R.T. Watson DNA amplification in a microfabricated reaction chamber Transducers '93, Seventh International Conference on Solid state Sens Actuators Yokohama, Japan 1995 924 926 ISBN: 4-990024709-2-9
14. W.P. Yan, L.Q. Du, J. Wang, L.Z. Ma, and J.B. Zhu Simulation and experimental study of PCR chip based on silicon Sens. Actuators B 108 2005 695 699
15. C. Lee, G. Lee, J. Lin, F. Huang, and C. Liao Integrated microfluidic systems for cell lysis, mixing/pumping and DNA amplification J. Micromech. Microeng. 15 2005 1215 1223
16. N. Ramalingam, H.B. Liu, C.C. Dai, Y. Jiang, H. Wang, Q. Wang, K.M. Hui, and H.Q. Gong Real-time PCR array chip with capillary-driven sample loading and reactor sealing for point-of-care applications Biomed. Microdevices 11 2009 1007 1020
17. D.C. Duffy, J.C. McDonald, O.J.A. Schueller, and G.M. Whitesides Rapid prototyping of microfluidic systems in poly(dimethylsiloxane) Anal. Chem. 70 1998 4974 4984
18. H. Liu, H. Gong, N. Ramalingam, Y. Jiang, C. Dai, and K.M. Hui Micro air bubble formation and its control during polymerase chain reaction (PCR) in polydimethylsiloxane (PDMS) microreactors Micromech. Microeng. 17 2007 2055 2064
19. K. Hosokawa, K. Sato, N. Ichikawa, and M. Maeda Power-free poly(dimethylsiloxane) microfluidic devices for gold nanoparticle-based DNA analysis Lab Chip 4 2004 181 185
20. Q. Xiang, B. Xu, R. Fu, and D. Li Real time PCR on disposable PDMS chip with a miniaturized thermal cycler Biomed. Microdevices 7 2005 273 279
21. C. Zhang, J. Xu, W. Ma, and W. Zheng PCR microfluidic devices for DNA amplification Biotechnol. Adv. 24 2006 243 284
22. Z.Q. Niu, W.Y. Chen, S.Y. Shao, X.Y. Jia, and W.P. Zhang DNA amplification on a PDMS-glass hybrid microchip J. Micromech. Microeng. 16 2006 425 433
23. H. Gong, N. Ramalingam, L. Chen, J. Che, Q. Wang, Y. Wang, X. Yang, P.H.E. Yap, and C.H. Neo Microfluidic handling of PCR solution and DNA amplification on a reaction chamber array biochip Biomed. Microdevices 8 2006 167 176
24. C.N. Liu, N.M. Toriello, and R.A. Mathies Multichannel PCR-CE microdevice for genetic analysis Anal. Chem. 78 2006 5474 5479
25. Y. Matsubara, K. Kerman, M. Kobayashi, S. Yamamura, Y. Morita, and E. Tamiya Microchamber array based DNA quantification and specific sequence detection from a single copy via PCR in nanoliter volumes Biosens. Bioelectron. 20 2005 1482 1490
26. L.A. Legendre, J.M. Bienvenue, M.G. Roper, J.P. Ferrance, and J.P. Landers A simple, valveless microfluidic sample preparation device for extraction and amplification of DNA from nanoliter-volume samples Anal. Chem. 78 2006 1444 1451
27. R. Prakash, S. Adamia, V. Sieben, P. Pilarski, L.M. Pilarski, and C.J. Backhouse Small volume PCR in PDMS biochips with integrated fluid control and vapour barrier Sens. Actuators B 113 2006 398 409
28. J. Liu, C. Hansen, and S.R. Quake Solving the "World-to-Chip" interface problem with a microfluidic matrix Anal. Chem. 75 2003 4718 4723
29. J.M. Martin, M. Carrington, and D. Mann A method for using serum or plasma as a source of DNA for HLA typing Hum. Immunol. 33 1992 108 113
30. M. Chabert, K.D. Dorfman, P. Cremoux, J. Roeraade, and J. Viovy Automated microdroplet platform for sample manipulation and polymerase chain reaction Anal. Chem. 78 2006 7722 7728
31. Y. Hataoka, L. Zhang, T. Yukimasa, and Y. Baba Rapid microvolume PCR of DNA confirmed by microchip electrophoresis Anal. Sci. 21 2005 53 56
32. S. Poser, T. Schulz, U. Dillner, V. Baier, J.M. Köhler, D. Schimkat, G. Mayer, and A. Siebert Chip elements for fast thermocycling Sens. Actuators A 62 1997 672 675
33. M.H. Ha, K. Kerman, T. Endo, M. Saito, and E. Tamiya Nanostructured biochip for label-free and real-time optical detection of polymerase chain reaction Anal. Chim. Acta 661 2010 111 116
34. M.A. Edding, and B.K. Gale A PDMS-based gas permeation pump for on-chip fluid handling in microfluidic devices J. Micromech. Microeng. 16 2006 2396 2402
35. D. Pomp, and J.F. Medrano Organic solvents as facilitators of polymerase chain reaction Biotechniques 10 1991 10 38
36. T. Nakayama, Y. Kurosawa, S. Furui, K. Kerman, M. Kobayashi, S.R. Rao, Y. Yonezawa, K. Nakano, A. Hino, S. Yamamura, Y. Takamura, and E. Tamiya Circumventing air bubbles in microfluidic systems and quantitative continuous-flow PCR applications Anal. Bioanal. Chem. 386 2006 1327 1333
37. Y.S. Shin, K. Cho, S.H. Lim, S. Chung, S.J. Park, C. Chung, D.C. Han, and J.K. Chang PDMS-based micro PCR chip with Parylene coating J. Micromech. Microeng. 13 2003 768 774