Identification and characterization of differentially expressed ESTs in date palm leaves affected by brittle leaf disease

Plant Science

Volumn 179, Issue 4, 2010, Pages 325-332

  Saidi, Mohammed Najib ^a   Ladouce, Nathalie ^b,c   Hadhri, Rania ^a   Grima Pettenati, Jacqueline ^b,c   Drira, Noureddine ^d   Gargouri Bouzid, Radhia ^a  

^a UNIVERSITY OF SFAX   (Tunisia)

^b UNIVERSITÉ DE TOULOUSE   (France)

^c CNRS   (France)

^d Faculté des Sciences de Sfax   (Tunisia)

Author keywords

Brittle leaf disease; Phoenix dactylifera; Suppression subtractive hybridization

Indexed keywords

PHOENIX DACTYLIFERA;

EID: 77955431012     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.06.002     Document Type: Article

References (57)

1. Chao C.T., Krueger R.R. The date palm (Phoenix dactylifera L.): overview of biology, uses, and cultivation. HortScience 2007, 42:1077-1082.
2. Triki M.A., Zouba A., Khoualdia O., Ben Mahamoud O., Takrouni M.L., Garnier M., Bové J.M., Montarone M., Poupet A., Flores R., Daròs J.A., Fadda Z.G.N., Moreno P., Duran-Vila N. "Maladie des feuilles cassantes" or brittle leaf disease of date palms in Tunisia: biotic or abiotic disease?. J. Plant Pathol. 2003, 85:71-79.
3. Namsi A., Montarone M., Serra P., Ben Mahamoud O., Takrouni M.L., Zouba A., Khoualdia O., Bové J.M., Duran-Vila N. Manganese and brittle leaf disease of date palm trees. J. Plant Pathol. 2007, 89:49-60.
4. Namsi A., Marques J., Fadda Z., Takrouni M.L., Ben Mahamoud O., Zouba A., Daros J.A., Flores R., Bove J.M., Duran-Vila N. Diagnosis of "Maladie des feuilles cassantes" or Brittle leaf disease of date palms by detection of associated chloroplast encoded double stranded RNAs. Mol. Cell. Probes 2006, 20:366-370.
5. Huang X., Li Y., Niu Q., Zhang K. Suppression subtractive hybridization (SSH) and its modifications in microbiological research. Appl. Microbiol. Biotechnol. 2007, 76:753-760.
6. Saidi M.N., Gargouri-Bouzid R., Rayanni M., Drira N. Optimization of RNA isolation from Brittle Leaf Disease affected date palm leaves and construction of a subtractive cDNA library. Mol. Biotechnol. 2009, 41:63-68.
7. Degenhardt J., Al-Masri A.N., Kurkcuoglu S., Szankowski I., Gau A.E. Characterization by suppression subtractive hybridization of transcripts that are differentially expressed in leaves of apple scab-resistant and susceptible cultivars of Malus domestica. Mol. Genet. Genomics 2005, 273:326-335.
8. Berta M., Giovannelli A., Potenza E., Traversi M.L., Racchi M.L. Type 3 metallothioneins respond to water deficit in leaf and in the cambial zone of white poplar (Populus alba). J. Plant Physiol. 2009, 166:521-530.
9. Brkljacic J.M., Samardzic J.T., Timotijevic G.S., Maksimovic V.R. Expression analysis of buckwheat (Fagopyrum esculentum Moench) metallothionein-like gene (MT3) under different stress and physiological conditions. J. Plant Physiol. 2004, 161:741-746.
10. Jin S., Cheng Y., Guan Q., Liu D., Takano T., Liu S. A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses. Biotechnol. Lett. 2006, 28:1749-1753.
11. Wisniewski M., Bassett C., Norelli J., Macarisin D., Artlip T., Gasic K., Korban S. Expressed sequence tag analysis of the response of apple (Malus x domestica 'Royal Gala') to low temperature and water deficit. Physiol. Plant 2008, 133:298-317.
12. Apel K., Hirt H. Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu. Rev. Plant Biol. 2004, 55:373-399.
13. Kruse E., Mock H.P., Grimm B. Coproporphyrinogen III oxidase from barley and tobacco sequence analysis and initial expression studies. Planta 1995, 196:796-803.
14. Richter M.L., Samra H.S., He F., Giessel A.J., Kuczera K.K. Coupling proton movement to ATP synthesis in the chloroplast ATP synthase. J. Bioenerg. Biomembr. 2005, 37:467-473.
15. Marques J., Fadda Z.G., Duran-Vila N., Flores R., Bove J.M., Daros J.A. A set of novel RNAs transcribed from the chloroplast genome accumulates in date palm leaflets affected by brittle leaf disease. Phytopathology 2008, 98:337-344.
16. Mager W.H. Control of ribosomal protein gene expression. Biochem. Biophys. Acta 1988, 949:1-15.
17. Yao Y., Ni Z., Du J., Wang X., Wu H., Sun Q. Isolation and characterization of 15 genes encoding ribosomal proteins in wheat (Triticum aestivum L.). Plant Sci. 2006, 170:579-586.
18. Xue T., Li X., Zhu W., Wu C., Yang G., Zheng C. Cotton metallothionein GhMT3a, a reactive oxygen species scavenger, increased tolerance against abiotic stress in transgenic tobacco and yeast. J. Exp. Bot. 2009, 60:339-349.
19. Davletova S., Rizhsky L., Liang H., Shengqiang Z., Oliver D.J., Coutu J., Shulaev V., Schlauch K., Mittler R. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 2005, 17:268-281.
20. Mir G., Domenech J., Huguet G., Guo W.J., Goldsbrough P., Atrian S., Molinas M. A plant type 2 metallothionein (MT) from cork tissue responds to oxidative stress. J. Exp. Bot. 2004, 55:2483-2493.
21. Palmiter R.D. The elusive function of metallothioneins. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:8428-8430.
22. Coyle P., Philcox J.C., Carey L.C., Rofe A.M. Metallothionein: the multipurpose protein. Cell Mol. Life Sci. 2002, 59:627-647.
23. Cobbett C., Goldsbrough P. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annu. Rev. Plant Biol. 2002, 53:159-182.
24. 2+ binding protein from maize. Biochem. Biophys. Acta 2006, 1764:239-245.
25. Sorimachi H., Ishiura S., Suzuki K. Structure and physiological function of calpains. Biochem. J. 1997, 328:721-732.
26. 2+)-binding protein ALG-2 and Alzheimer's disease gene ALG-3. Science 1996, 271:521-525.
27. Lokuta A.J., Meyers M.B., Sander P.R., Fishman G.I., Valdivia H.H. Modulation of cardiac ryanodine receptors by sorcin. J. Biol. Chem. 1997, 272:25333-25338.
28. Meyers M.B., Pickel V.M., Sheu S.S., Sharma V.K., Scotto K.W., Fishman G.I. Association of sorcin with the cardiac ryanodine receptor. J. Biol. Chem. 1995, 270:26411-26418.
29. Liu J., Han L., Chen F., Bao J., Zhang F., Mi G. Microarray analysis reveals early responsive genes possibly involved in localized nitrate stimulation of lateral root development in maize (Zea mays L.). Plant Sci. 2008, 175:272-282.
30. Lim P.O., Woo H.R., Nam H.G. Molecular genetics of leaf senescence in Arabidopsis. Trends Plant Sci. 2003, 8:272-278.
31. Buchanan-Wollaston V., Ainsworth C. Leaf senescence in Brassica napus: cloning of senescence related genes by subtractive hybridization. Plant Mol. Biol. 1997, 33:821-834.
32. Buchanan-Wollaston V., Earl S., Harrison E., Mathas E., Navabpour S., Page T., Pink D. The molecular analysis of leaf senescence a genomics approach. Plant Biotechnol. J. 2003, 1:3-22.
33. Pruzinska A., Anders I., Aubry S., Schenk N., Tapernoux-Luthi E., Muller T., Krautler B., Hortensteiner S. In vivo participation of red chlorophyll catabolite reductase in chlorophyll breakdown. Plant Cell 2007, 19:369-387.
34. Toroser D., Athwal G.S., Huber S.C. Site-specific regulatory interaction between spinach leaf sucrose-phosphate synthase and 14-3-3 proteins. FEBS Lett. 1998, 435:110-114.
35. Weiner H., Kaiser W.M. 14-3-3 Proteins control proteolysis of nitrate reductase in spinach leaves. FEBS Lett. 1999, 455:75-78.
36. +-ATPase activity in the plasma membrane of suspension-cultured sugar beet cells under cold stress. FEBS Lett. 1999, 456:22-26.
37. Moorhead G., Douglas P., Cotelle V., Harthill J., Morrice N., Meek S., Deiting U., Stitt M., Scarabel M., Aitken A., MacKintosh C. Phosphorylation-dependent interactions between enzymes of plant metabolism and 14-3-3 proteins. Plant J. 1999, 18:1-12.
38. Pan S., Sehnke P.C., Ferl R.J., Gurley W.B. Specific interactions with TBP and TFIIB in vitro suggest that 14-3-3 proteins may participate in the regulation of transcription when part of a DNA binding complex. Plant Cell 1999, 11:1591-1602.
39. Schultz T.F., Medina J., Hill A., Quatrano R.S. 14-3-3 Proteins are part of an abscissic acid-viviparous1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1. Plant Cell 1998, 10:837-847.
40. Wang J., Goodman H.M., Zhang H. An Arabidopsis 14-3-3 protein can act as a transcriptional activator in yeast. FEBS Lett. 1999, 443:282-284.
41. Sehnke P.C., Henry R., Cline K., Ferl R.J. Interaction of a plant 14-3-3 protein with the signal peptide of a thylakoid-targeted chloroplast precursor protein and the presence of 14-3-3 isoforms in the chloroplast stroma. Plant Physiol. 2000, 122:235-242.
42. A. Amunts, H. Toporik, A. Borovikova, N. Nelson, Structure determination and improved model of plant photosystem I, J. Biol. Chem. 285 3478-3486.
43. Feller U., Crafts-Brandner S.J., Salvucci M.E. Moderately high temperatures inhibit ribulose-1, 5-bisphosphate carboxylase/oxygenase (rubisco) activase-mediated activation of rubisco. Plant Physiol. 1998, 116:539-546.
44. Salvucci M.E., Crafts-Brandner S.J. Inhibition of photosynthesis by heat stress: the activation state of Rubisco as a limiting factor in photosynthesis. Physiol. Plant 2004, 120:179-186.
45. Kurek I., Chang T.K., Bertain S.M., Madrigal A., Liu L., Lassner M.W., Zhu G. Enhanced thermostability of Arabidopsis Rubisco activase improves photosynthesis and growth rates under moderate heat stress. Plant Cell 2007, 19:3230-3241.
46. Gavalas N.A., Clark H.E. On the role of manganese in photosynthesis: kinetics of photoinhibition in manganese-deficent and 3-(4-chlorophenyl)-1, 1-dimethylurea-inhibited Euglena gracilis. Plant Physiol. 1971, 47:139-143.
47. Tanner H.A., Brown T.E., Eyster C., Treharne R.W. A manganese dependent photosynthetic process. Biochem. Biophys. Res. Commun. 1960, 3:205-210.
48. Henriques F.S. Gas exchange, chlorophyll a fluorescence kinetics and lipid peroxidation of pecan leaves with varying manganese concentrations. Plant Sci. 2003, 165:239-244.
49. Kriedemann P.E., Graham R.D., Wiskich J.T. Photosynthetic dysfunction and in vivo changes in chlorophyll a fluorescence from manganese-deficient wheat leaves. Aust. J. Agric. Res. 1985, 36:157-169.
50. Lerer M., Bar-akiva A. Effect of manganese deficiency on chloroplasts of lemon leaves. Physiol. Plant 1979, 47:163-166.
51. Ohki K. Manganese deficiency and toxicity effects on photosynthesis, chlorophyll, and transpiration in wheat. Crop Sci. 1985, 25:187-191.
52. Singh A.K., Singhal G.S. Regulation of plastid gene expression by high temperature during light induced chloroplast development. Photosynthetica 2001, 39:353-361.
53. Clairmont K.B., Hagar W.G., Davis E.A. Manganese toxicity to chlorophyll synthesis in tobacco callus. Plant Physiol. 1986, 80:291-293.
54. Gonzalez A., Steffen K.L., Lynch J.P. Light and excess manganese. Implications for oxidative stress in common bean. Plant Physiol. 1998, 118:493-504.
55. Kabata-Pendias A. Soil-plant transfer of trace elements an environmental issue. Geoderma 2004, 122:143-149.
56. Schnarrenberger C., Kruger I. Distinction between cytosol and chloroplast fructose-bisphosphate aldolases from pea, wheat, and corn leaves. Plant Physiol. 1986, 80:301-304.
57. Job C., Briat J.F., Lescure A.M., Job D. Abortive and productive elongation catalysed by purified spinach chloroplast RNA polymerase. Eur. J. Biochem. 1987, 165:515-519.