Microarray technology: A promising tool in nutrigenomics

Critical Reviews in Food Science and Nutrition

Volumn 50, Issue 7, 2010, Pages 693-698

  Masotti, Andrea ^a   da Sacco, Letizia ^a   Bottazzo, Gian Franco ^a   Alisi, Anna ^a  

^a BAMBINO GESÙ CHILDREN S HOSPITAL   (Italy)

Author keywords

Food; Gene expression; Macronutrients; Micronutrients; Nutritional genomics

Indexed keywords

AMOUNT OF INFORMATION; BIOACTIVE COMPOUNDS; CRITICAL REVIEW; FOOD; GENE EXPRESSION PROFILES; GENE TRANSCRIPTIONS; GENOMICS; MACRONUTRIENTS; MICROARRAY TECHNOLOGIES; MICRONUTRIENTS; NATURAL AGENTS; NEW APPLICATIONS; NEW APPROACHES; NEW TECHNOLOGIES; NUTRIGENOMICS; PREDICTIVE FACTORS;

BIOINFORMATICS; CHEMICAL CONTAMINATION; DISEASES; MICROARRAYS; NUTRIENTS; TRACE ELEMENTS; TRANSCRIPTION;

GENE EXPRESSION REGULATION;

ARTICLE; METHODOLOGY; MICROARRAY ANALYSIS; NUTRIGENOMICS;

MICROARRAY ANALYSIS; NUTRIGENOMICS;

EID: 77955389332     PISSN: 10408398     EISSN: 15497852     Source Type: Journal    
DOI: 10.1080/10408390903044156     Document Type: Article

References (30)

1. Alisi, A., Masotti, A., and Nobili, V. (2009). Profiling microRNA expression: A snapshot of nonalcoholic steatohepatitis and a recording of its pathogenesis. Hepatology 49: 706-707.
2. Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., Aach, J., Ansorge, W., Ball, C. A., Causton, H. C., Gaasterland, T., Glenisson, P., Holstege, F. C., Kim, I. F., Markowitz, V., Matese, J. C., Parkinson, H., Robinson, A., Sarkans, U., Schulze-Kremer, S., Stewart, J., Taylor, R., Vilo, J., and Vingron, M. (2001). Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 29: 365-371.
3. Burgoon, L. D. and Zacharewski, T. R. (2008). Bioinformatics: Databasing and gene annotation. Methods Mol. Biol. 460:145-157.
4. Cordain, L., Eaton, S. B., Sebastian, A., Mann, N., Lindeberg, S., Watkins, B. A., O'Keefe, J. H., and Brand-Miller, J. (2005). Origins and evolution of the Western diet: Health implications for the 21st century. Am. J. Clin. Nutr. 81: 341-354.
5. D'Ambrosio, C., Gatta, L., and Bonini, S. (2005). The future of microarray technology: networking the genome search. Allergy 60: 1219-1226.
6. Graf, B. A., Milbury, P.E., and Blumberg, J.B. (2005). Flavonols, flavones, flavanones, and human health: Epidemiological evidence. J Med Food. 8: 281-290.
7. Hussein, G., Sankawa, U., Goto, H., Matsumoto, K., and Watanabe, H. (2006). Astaxanthin, a carotenoid with potential in human health and nutrition. J. Nat. Prod. 69: 443-449.
8. Jones, P. G., Allaway, D., Gilmour, D. M., Harris, C., Rankin, D., Retzel, E. R., and Jones, C. A. (2002). Gene discovery and microarray analysis of cacao (Theobroma cacao L.) varieties. Planta 216: 255-264.
9. Kaput, J. (2007). Developing the promise of nutrigenomics through complete science and international collaborations. Forum Nutr. 60: 209-223.
10. Kaput, J. and Rodriguez, R.L. (2004). Nutritional genomics: The next frontier in the postgenomic era. Physiol. Genomics 16: S166-177.
11. Kitajka, K., Sinclair, A. J., Weisinger, R. S., Weisinger, H. S., Mathai, M., Jayasooriya, A. P., Halver, J. E., and Puskas, L. G. (2004). Effects of dietary omega-3 polyunsaturated fatty acids on brain gene expression. Proc. Nat. Ac. Sci. USA 101: 10931-10936.
12. Kussmann, M., Raymond, F., and Affolter, M. (2006).OMICS-driven biomarker discovery in nutrition and health. J. Biotechnol. 124: 758-787.
13. Mandimika, T., Baykus, H., Vissers, Y., Jeurink, P., Poortman, J., Garza, C., Kuiper, H.,and Peijnenburg, A.(2007).Differentialgeneexpressioninintestinal epithelial cells induced by single and mixtures of potato glycoalkaloids. J. Agric. Food Chem. 55: 10055-10066.
14. Misikangas, M., Pajari, A.-M., Paivarinta, E., Oikarinen, S. I., Rajakangas, J., Marttinen, M., Tanayama, H., Torronen, R., and Mutanen, M. (2007). Three nordic berries inhibit intestinal tumorigenesis in multiple intestinal neoplasia/1 mice by modulating b-catenin signaling in the tumor and transcription in the mucosa. J. Nutr. 137: 2285-2290.
15. Moody, D. E. (2001). Genomic techniques: An overview of methods for the study of gene expression. J. Anim. Sci. 79: E128 -135.
16. Muller, M. and Kersten, S. (2003). Nutrigenomics: Goals and strategies. Nat. Rev. 4: 315-322.
17. Müller, O. and Krawinkel, M. (2005). Malnutrition and health in developing countries. CMAJ 173: 279-286.
18. Naito, Y., Uchiyama, K., Mizushima, K., Kuroda, M., Akagiri, S., Takagi, T., Handa, O., Kokura, S., Yoshida, N., Ichikawa, H., Takahashi, J., and Yoshikawa, T. (2006). Microarray profiling of gene expression patterns in glomerular cells of astaxanthin-treated diabetic mice: A nutrigenomic approach. Int. J. Mol. Med. 18: 685-695.
19. Nakagawa, K., Eitsuka, T., Inokuchi, H., and Miyazawa, T. (2004). DNA chip analysis of comprehensive food function: Inhibition of angiogenesis and telomerase activity with unsaturated vitamin E, tocotrienol. Biofactors 21: 5-10.
20. Narita, Y., Nomura, J., Ohta, S., Inoh, Y., Suzuki, K. M., Araki, Y., Okada, S., Matsumoto, I., Isohama, Y., Abe, K., Miyata, T., and Mishima, S. (2006). Royal jelly stimulates bone formation: physiologic and nutrigenomic studies with mice and cell lines. Biosci. Biotechnol. Biochem. 70: 2508-2514.
21. Ordovas, J. M. and Mooser, V. (2004). Nutrigenomics and nutrigenetics. Curr. Opin. Lipidol. 15: 101-108.
22. Reecy, J. M., Spurlock, D. M., and Stahl, C. H. (2006). Gene expression profiling: insights into skeletal muscle growth and development. J. Anim. Sci. 84: E150-154.
23. Rimbach, G., Boesch-Saadatmandi, C., Frank, J., Fuchs, D., Wenzel, U., Daniel, H., Hall, W. L., and Weinberg, P. D. (2008). Dietary isoflavones in the prevention of cardiovascular disease-a molecular perspective. Food Chem. Toxicol. 46: 1308-1319.
24. Roberfroid, M. B. (2000). Concepts and strategy of functional food science: The European perspective. Am. J. Clin. Nutr. 71: S1660-1675.
25. Ruan, E. and Teng, J. O. (2002). Science, medicine, and the future: Nutritional genomics, Br. Med. J.324: 1438-1442.
26. Takamatsu, K., Tachibana, N., Matsumoto, I., and Abe, K. (2004). Soy protein functionality and nutrigenomic analysis. Biofactors 21: 49-53.
27. Terol, J., Conesa, A., Colmenero, J.M., Cercos, M., Tadeo, F., Agustí, J., Alós, E., Andres, F., Soler, G., Brumos, J., Iglesias, D.J., Götz, S., Legaz, F., Argout, X., Courtois, B., Ollitrault, P., Dossat, C., Wincker, P., Morillon, R., and Talon, M. (2007). Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics 8: 31.
28. Tsubouchi, H., Yamamoto, K., Hisada, K., Sakabe, Y., and Udagawa, S. (1987). Effect of roasting on ochratoxin A level in green coffee beans inoculated with Aspergillus ochraceus. Mycopathologia 97: 111-115.
29. Webb, P., Nishida, C., and Darnton-Hill, I. (2007). Age and gender as factors in the distribution of global micronutrient deficiencies. Nutr. Rev. 65: 233-245.
30. (2006). MAQC Consortium The MicroArray Quality Control (MAQC) project shows interand intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24: 1151-1161.