Fluorescent pseudomonads as biocontrol agents for sustainable agricultural systems

Research in Microbiology

Volumn 161, Issue 6, 2010, Pages 464-471

  Hofte M ^a   Altier, Nora ^b  

^a GHENT UNIVERSITY   (Belgium)

^b INSTITUTO NACIONAL DE INVESTIGACIÓN AGROPECUARIA INIA   (Uruguay)

Author keywords

2,4 Diacetylphloroglucinol; Alfalfa; Biosurfactants; Birdsfoot trefoil; Cocoyam; Cyclic lipopeptides; Fluorescent pseudomonas; Hydrogen cyanide; Lotus corniculatus; Medicago sativa; Phenazines; Pyoluteorin; Pyrrolnitrin; Xanthosoma sagittifolium

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BIOLOGICAL CONTROL AGENT; CAMEROON; FLUORESCENCE; FORAGE; LEGUME; METABOLITE; NONHUMAN; PHYLOGENY; PLANT GROWTH; PRIORITY JOURNAL; PSEUDOMONADACEAE; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; PSEUDOMONAS SYRINGAE; SCREENING; SUSTAINABLE AGRICULTURE; URUGUAY; AGRICULTURE; BIODIVERSITY; BIOLOGICAL PEST CONTROL; CLASSIFICATION; FABACEAE; GROWTH, DEVELOPMENT AND AGING; HEALTH CARE FACILITY; METABOLISM; MICROBIOLOGY; PATHOGENICITY; PLANT DISEASE; PLANT ROOT; PREVENTION AND CONTROL; PSEUDOMONAS; PYTHIUM; UTILIZATION; XANTHOSOMA;

AGRICULTURE; ANTIFUNGAL AGENTS; BIODIVERSITY; BIOLOGICAL SPECIMEN BANKS; CAMEROON; FABACEAE; FLUORESCENCE; PEST CONTROL, BIOLOGICAL; PLANT DISEASES; PLANT ROOTS; PSEUDOMONAS; PYTHIUM; URUGUAY; XANTHOSOMA;

COLOCASIA ESCULENTA; LOTUS CORNICULATUS; MEDICAGO SATIVA; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS GROUP; XANTHOSOMA SAGITTIFOLIUM;

ANTIFUNGAL AGENT;

EID: 77955339024     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2010.04.007     Document Type: Article

References (62)

1. Adiobo A., Oumar O., Perneel M., Zok S., Höfte M. Variation of Pythium-induced cocoyam root rot severity in response to soil type. Soil. Biol. Biochem. 2007, 39:2915-2925.
2. Altier N., Thies J.A. Identification of resistance to Pythium seedling diseases in alfalfa using a culture plate method. Plant. Dis. 1995, 79:341-346.
3. Anjaiah V., Cornelis P., Koedam N. Effect of genotype and root colonization in biological control of fusarium wilts in pigeonpea and chickpea by Pseudomonas aeruginosa PNA1. Can. J. Microbiol. 2003, 49:85-91.
4. Anjaiah V., Koedam N., Nowak-Thompson B., Loper J.E., Höfte M., Tambong J.T., Cornelis P. Involvement of phenazines and anthranilate in the antagonism of Pseudomonas aeruginosa PNA1 and Tn5 derivatives toward Fusarium spp. and Pythium spp. Mol. Plant Microbe Interact 1998, 11:847-854.
5. Anzai Y., Kim H., Park J.Y., Wakabayashi H., Oyaizu H. Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int. J. Syst. Evol. Microbiol. 2000, 50:1563-1589.
6. Audenaert K., Pattery T., Cornelis P., Höfte M. Induction of systemic resistance to Botrytis cinerea in tomato by Pseudomonas aeruginosa 7NSK2: role of salicylic acid, pyochelin, and pyocyanin. Mol. Plant Microbe. Interact. 2002, 15:1147-1156.
7. Bagnasco P., De La Fuente L., Gualtieri G., Noya F., Arias A. Fluorescent Pseudomonas spp. as biocontrol agents against forage legume root pathogenic fungi. Soil. Biol. Biochem 1998, 30:1317-1322.
8. Bajsa N., Quagliotto L., Yanes M.L., Vaz P., Azziz G., De La Fuente L., Bagnasco P., Davyt D., Pérez C., Ducamp F., Altier N., Arias A. Selección de Pseudomonas fluorescentes nativas para controlar enfermedades de implantación en praderas. Agrociencia 2005, 9:321-325.
9. Bakker P.A.H.M., Pieterse C.M.J., van Loon L.C. Induced systemic resistance by fluorescent Pseudomonas spp. Phytopathology 2007, 97:239-243.
10. Brockwell J., Bottomley P.J. Recent advances in inoculant technology and prospects for the future. Soil. Biol. Biochem. 1995, 27:683-697.
11. Browne P., Rice O., Miller S.H., Burke J., Dowling D.N., Morrisey J.P., O'Gara F. Superior inorganic phosphate solubilisation is linked to phylogeny within the Pseudomonas fluorescens complex. Appl. Soil. Ecol. 2009, 43:131-138.
12. Campbell R. Biological Control of Microbial Plant Pathogens 1989, Cambridge University Press.
13. Catroux G., Hartmann A., Revellin C. Trends in rhizobial inoculant production and use. Plant. Soil. 2001, 230:21-30.
14. Chin-A-Woeng T.F.C., Bloemberg G.V., van der Bij A.J., van der Drift K.M.G.F., Schripsema J., Kroon B., Scheffer R.J., Keel C., et al. Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Mol. Plant Microbe Interact 1998, 11:1069-1077.
15. Chin-A-Woeng T.F.C., Bloemberg G.V., Lugtenberg B.J. Phenazines and their role in biocontrol by Pseudomonas bacteria. New Phytol 2003, 137:503-523.
16. De La Fuente L., Quagliotto L., Bajsa N., Fabiano E., Altier N., Arias A. Inoculation with Pseudomonas fluorescens biocontrol strains does not affect the symbiosis between rhizobia and forage legumes. Soil. Biol. Biochem. 2002, 34:545-548.
17. De La Fuente L., Thomashow L., Weller D., Bajsa N., Quagliotto L., Chernin L., Arias A. Pseudomonas fluorescens UP61 isolated from birdsfoot trefoil rhizosphere produces multiple antibiotics and exerts a broad spectrum of biocontrol activity. Eur. J. Plant Pathol. 2004, 110:671-681.
18. De Vleesschauwer D., Höfte M. Rhizobacteria-induced systemic resistance. Adv. Bot. Res. 2009, 51:223-281.
19. Floyd M.M., Tang J., Kane M., Emerson S. Captured diversity in a culture collection: case study of the geographic and habitat distributions of environmental isolates held at the American Type Culture Collection. Appl. Environ. Microbiol. 2005, 71:2813-2823.
20. Frapolli M., Défago G., Moenne-Loccoz Y. Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol. Environ. Microbiol. 2007, 9:1939-1955.
21. Fravel D.R. Commercialization and implementation of biocontrol. Annu. Rev. Phytopathol. 2005, 43:337-359.
22. Haas D., Défago G. Biological control of soil-borne pathogens by fluorescent Pseudomonads. Nat. Rev. Microbiol. 2005, 3:307-319.
23. Haas D., Keel C. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annu. Rev. Phytopathol. 2003, 41:117-153.
24. Handelsman J., Raffel S., Mester E.H., Wunderlich L., Grau C.R. Biological control of damping-off of alfalfa seedlings with Bacillus cereus UW85. Appl. Environ. Microbiol. 1990, 56:713-718.
25. Höfte M., De Vos P. Plant Pathogenic Pseudomonas Species. Plant-associated Bacteria 2006, 507-533. Springer, The Netherlands. S.S. Gnanamanickam (Ed.).
26. Janisiewicz W.J., Marchi A. Control of storage rots on various pear cultivars with a saprophytic strain of Pseudomonas syringae. Plant. Dis. 1992, 76:555-560.
27. Jones C.R., Samac D.A. Biological control of fungi causing alfalfa seedling damping-off with a disease-suppressive strain of Streptomyces. Biol. Contr. 1996, 7:196-204.
28. Kamilova F., Validov S., Azarova T., Mulders I., Lugtenberg B. Enrichment for enhanced competitive plant root tip colonizers selects for a new class of biocontrol bacteria. Environ. Microbiol. 2005, 7:1809-1817.
29. Kang S., Blair J.E., Geiser D.M., Khang C.-H., Park S.-Y., Gahegan M., O'Donnel K., Luster D.G., Kim S.H., Ivors K.L., Lee Y.-H., Lee Y.-W., Grünwald N.J., Martin F.M., Coffey M.D., Veeraraghavan N., Makalowska I. Plant pathogen culture collections: it takes a village to preserve these resources vital to the advancement of agricultural security and plant pathology. Phytopathology 2006, 96:920-925.
30. Keel C., Weller D.M., Natsch A., Défago G., Cook R.J., Thomashow L.S. Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations. Appl. Environ. Microbiol. 1996, 62:552-563.
31. Kloepper J.W., Leong J., Teintze M., Schroth M.N. Enhanced plant growth by siderophores produced by plant growth promoting rhizobacteria. Nature 1980, 286:885-886.
32. Loper J.E. Role of fluorescent siderophore production in biological control of Pythium ultimum by a Pseudomonas fluorescens strain. Phytopathology 1988, 78:166-172.
33. Lupwayi N.Z., Olsen P.E., Sande E.S., Keyser H.H., Collins M.M., Singleton P.W., Rice W.A. Inoculant quality and its evaluation. Field Crop Res. 2000, 65:259-270.
34. Martin F.N., Loper J.E. Soilborne plant diseases caused by Pythium spp.: ecology, epidemiology and prospects for biological control. Crit. Rev. Plant Sci. 1999, 18:111-181.
35. McSpadden Gardener B.B. Diversity and ecology of biocontrol Pseudomonas spp. in agricultural systems. Phytopathology 2007, 97:221-226.
36. Palleroni N.J., Kunisawa R., Contopoulou R., Doudoroff M. Nucleic acid homologies in the genus Pseudomonas. Int. J. Syst. Bacteriol. 1973, 23:333-339.
37. Paulsen I.T., Press C.M., Ravel J., Kobayashi D.Y., Myers G.S.A., Mavrodi D.V., DeBoy R.T., Seshadri R., et al. Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat. Biotechnol. 2005, 23:873-878.
38. Peix A., Ramirez-Bahena M.H., Velazquez E. Historical evolution and current status of the taxonomy of genus Pseudomonas. Infect. Genet. Evol. 2009, 10.1016/j.meegid.2009.08.001.
39. Pérez C., De La Fuente L., Arias A., Altier N. Uso de Pseudomonas fluorescentes nativas para el control de enfermedades de implantación en Lotus corniculatus L. Agrociencia 2000, 4:41-47.
40. Perneel, M., 2006. The root rot pathogen Pythium myriotylum on cocoyam (Xanthosoma sagittifolium (L.) Schott): intraspecific variability and biological control, Ph.D. thesis. Ghent University, 178 pp.
41. Perneel M., Tambong J.T., Adiobo A., Floren C., Saborio F., Lévesque A., Höfte M. Intraspecific variability of Pythium myriotylum isolated from cocoyam and other host crops. Mycol. Res. 2006, 110:583-593.
42. Perneel M., Heyrman J., Adiobo A., De Maeyer K., Raaijmakers J.M., De Vos P., Höfte M. Characterization of CMR5c and CMR12a, novel fluorescent Pseudomonas strains from the cocoyam rhizosphere with biocontrol activity. J. Appl. Microbiol. 2007, 103:1007-1020.
43. Perneel M., D'Hondt L., De Maeyer K., Adiobo A., Rabaey K., Höfte M. Phenazines and biosurfactants interact in the biological control of soil-borne diseases caused by Pythium spp. Environ. Microbiol. 2008, 10:778-788.
44. Pierson L.S., Thomashow L.S. Cloning and heterologous expression of the phenazine biosynthetic locus from Pseudomonas aureofaciens 30-84. Mol. Plant Microbe Interact 1992, 5:330-339.
45. Picard C., Bosco M. Genotypic and phenotypic diversity in populations of plant-probiotic Pseudomonas spp. colonizing roots. Naturwissenschaften 2008, 95:1-16.
46. Preston G.M. Plant perceptions of plant growth-promoting Pseudomonas. Phil. Trans. R. Soc. Lond. B 2004, 359:907-918.
47. Quagliotto L., Azziz G., Bajsa N., Vaz P., Pérez C., Ducamp F., Cadenazzi M., Altier N., Arias A. Three native Pseudomonas fluorescens strains tested under growth chamber and field conditions as biocontrol agents against damping-off in alfalfa. Biol. Contr. 2009, 51:42-50.
48. Raaijmakers J.M., de Bruijn I., de Kock M.J.D. Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. Mol. Plant Microbe Interact 2006, 19:699-710.
49. Rebuffo M., Bemhaja M., Risso D.F. Utilization of forage legumes in pastoral systems: state of art in Uruguay. Lotus Newslett. 2006, 36:22-33.
50. Silby M.W., Cerdeno-Tarraga A.M., Vernikos G.S., Giddens S.R., Jackson R.W., Preston G.M., Zhang X.X., Moon C.D., et al. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol. 2009, 10:R51.
51. Smith D. Culture collections over the world. Int. Microbiol. 2003, 6:95-100.
52. Tambong J.T., Höfte M. Phenazines are involved in biocontrol of Pythium myriotylum on cocoyam by Pseudomonas aeruginosa PNA1. Eur. J. Plant Pathol. 2001, 107:511-521.
53. Tambong J.T., Perneel M., Höfte M., Levesque C.A. Intraspecific variability within Pythium. Phytopathology 2006, 96:S146.
54. Thomashow L.S., Weller D.M. Current Concepts in the Use of Introduced Bacteria for Biological Disease Control: Mechanisms and Antifungal Metabolites. Plant Microbe Interactions 1996, vol. 1:187-236. Chapman and Hall Ltd., London. G. Stacey, N. Keen (Eds.).
55. Vessey J.K. Plant growth promoting rhizobacteria as biofertilizers. Plant. Soil. 2003, 255:571-586.
56. Villacieros M., Power B., Sánchez-Contreras M., Lloret J., Oruezabal R.I., Martín M., Fernández-Piñas F., Bonilla I., et al. Colonization behaviour of Pseudomonas fluorescens and Sinorhizobium meliloti in the alfalfa (Medicago sativa) rhizosphere. Plant. Soil. 2003, 251:47-54.
57. Weller D.M., Cook R.J. Suppression of take-all of wheat by seed treatments with fluorescent pseudomonads. Phytopathology 1983, 73:463-469.
58. Weller D.M., Landa B.B., Mavrodi O.V., Schroeder K.L., De La Fuente L., Blouin Bankhead S., Allende Molar R., Bonsall R.F., et al. Role of 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. in the defense of plant roots. Plant. Biol. 2007, 9:4-20.
59. Weller D.M., McSpadden Gardener B.B., Raaijmakers J.M., Thomashow L.S. Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu. Rev. Phytopathol. 2002, 40:309-348.
60. World Federation for Culture Collections http://www.wfcc.info/.
61. Xiao K., Kinkel L.L., Samac D.A. Biological control of Phytophthora root rots on alfalfa and soybean with Streptomyces. Biol. Contr. 2002, 23:285-295.
62. Yanes M.L., Fernández A., Arias A., Altier N. Método para evaluar protección contra Pythium debaryanum y promoción del crecimiento de alfalfa por Pseudomonas fluorescentes. Agrociencia 2005, 8:23-32.