메뉴 건너뛰기




Volumn 30, Issue 4, 2008, Pages 554-564

Multiplex real-time polymerase chain reaction for identifying potato cyst nematodes, Globodera pallida and Globodera rostochiensis, and the tobacco cyst nematode, Globodera tabacum

Author keywords

Golden cyst nematode; Locked nucleic acid; Melting curve analysis; Molecular identification; Pale cyst nematode; Potato cyst nematode; Real time PCR; Tobacco cyst nematode

Indexed keywords

GLOBODERA; GLOBODERA PALLIDA; GLOBODERA ROSTOCHIENSIS; GLOBODERA TABACUM; GLOBODERA TABACUM TABACUM; NEMATODA; NICOTIANA TABACUM; SOLANUM TUBEROSUM;

EID: 77955210703     PISSN: 07060661     EISSN: None     Source Type: Journal    
DOI: 10.1080/07060660809507555     Document Type: Article
Times cited : (24)

References (39)
  • 1
    • 0036105359 scopus 로고    scopus 로고
    • Determination of relative proportions of Globodera species in mixed populations of potato cyst nematodes using PCR product melting peak analysis
    • Bates, J.A., Taylor, E.J.A., Gans, P.T., and Thomas, J.E. 2002. Determination of relative proportions of Globodera species in mixed populations of potato cyst nematodes using PCR product melting peak analysis. Mol. Plant Pathol. 3: 153-161.
    • (2002) Mol. Plant Pathol. , vol.3 , pp. 153-161
    • Bates, J.A.1    Taylor, E.J.A.2    Gans, P.T.3    Thomas, J.E.4
  • 2
    • 34948907624 scopus 로고    scopus 로고
    • First report of Globodera tabacum infecting tobacco plants in Quebec, Canada
    • Belair, G., and Miller, S. 2006. First report of Globodera tabacum infecting tobacco plants in Quebec, Canada. Plant Dis. 90: 527.
    • (2006) Plant Dis. , vol.90 , pp. 527
    • Belair, G.1    Miller, S.2
  • 3
    • 0030847380 scopus 로고    scopus 로고
    • Differentiation of Australasian potato cyst nematode (PCN) populations using the polymerase chain reaction (PCR). N.Z.
    • Bulman, S.R., and Marshall, J.W. 1997. Differentiation of Australasian potato cyst nematode (PCN) populations using the polymerase chain reaction (PCR). N.Z. J. Crop Hortic. Sci. 25: 123-129.
    • (1997) J. Crop Hortic. Sci. , vol.25 , pp. 123-129
    • Bulman, S.R.1    Marshall, J.W.2
  • 5
    • 0002837982 scopus 로고    scopus 로고
    • Diagnostics of cyst nematodes: Use of the polymerase chain reaction to determine species and estimate population levels
    • Fleming, C.C., Turner, S.J., Powers, T.O., and Szalanski, A.L. 1998. Diagnostics of cyst nematodes: use of the polymerase chain reaction to determine species and estimate population levels. Aspects Appl. Biol. 52: 375-382.
    • (1998) Aspects Appl. Biol. , vol.52 , pp. 375-382
    • Fleming, C.C.1    Turner, S.J.2    Powers, T.O.3    Szalanski, A.L.4
  • 7
    • 0034764424 scopus 로고    scopus 로고
    • Evaluation of PCR, IEF and ELISA techniques for the detection and identification of potato cyst nematodes from field soil samples in England and Wales
    • Ibrahim, S.K., Minnis, S.T., Barker, A.D.P., Russell, M.D., Haydock, P.P.J., Evans, K., Grove, I.G., Woods, S.R., and Wilcox, A. 2001. Evaluation of PCR, IEF and ELISA techniques for the detection and identification of potato cyst nematodes from field soil samples in England and Wales. Pest Manage. Sci. 57: 1068-1074.
    • (2001) Pest Manage. Sci. , vol.57 , pp. 1068-1074
    • Ibrahim, S.K.1    Minnis, S.T.2    Barker, A.D.P.3    Russell, M.D.4    Haydock, P.P.J.5    Evans, K.6    Grove, I.G.7    Woods, S.R.8    Wilcox, A.9
  • 8
    • 33747376356 scopus 로고    scopus 로고
    • Improved in situ hybridization efficiency with locked-nucleic- acidincorporated DNA probes
    • Kubota, K., Ohashi, A., Imachi, H., and Harada, H. 2006. Improved in situ hybridization efficiency with locked-nucleic-acidincorporated DNA probes. Appl. Environ. Microbiol. 72: 5311-5317.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5311-5317
    • Kubota, K.1    Ohashi, A.2    Imachi, H.3    Harada, H.4
  • 9
    • 0001531867 scopus 로고
    • Predisposition of broadleaf tobacco to Fusarium wilt by early infection with Globodera tabacum tabacum or Meloidogyne hapla
    • LaMondia, J.A. 1992. Predisposition of broadleaf tobacco to Fusarium wilt by early infection with Globodera tabacum tabacum or Meloidogyne hapla. J. Nematol. 24: 425-431.
    • (1992) J. Nematol. , vol.24 , pp. 425-431
    • LaMondia, J.A.1
  • 10
    • 34547520477 scopus 로고    scopus 로고
    • Application of real time PCR method for the detection of pine wood nematode, Bursaphylenchus xylophylus, in wood samples from lodgepole pine
    • Leal, I., Green, M., Allen, E., Humble, L., and Rott, M. 2007. Application of real time PCR method for the detection of pine wood nematode, Bursaphylenchus xylophylus, in wood samples from lodgepole pine. Nematology, 9: 351-362.
    • (2007) Nematology , vol.9 , pp. 351-362
    • Leal, I.1    Green, M.2    Allen, E.3    Humble, L.4    Rott, M.5
  • 11
    • 12944297735 scopus 로고    scopus 로고
    • Quantitative detection of the potato cyst nematodes, Globodera pallida, and the beet cyst nematode, Heterodera schachtii, using real-time PCR with SYBR green I dye
    • Madani, M., Subbotin, S., and Moens, M. 2005. Quantitative detection of the potato cyst nematodes, Globodera pallida, and the beet cyst nematode, Heterodera schachtii, using real-time PCR with SYBR Green I dye. Mol. Cell. Probes, 19: 81-86.
    • (2005) Mol. Cell. Probes , vol.19 , pp. 81-86
    • Madani, M.1    Subbotin, S.2    Moens, M.3
  • 12
    • 1842735936 scopus 로고    scopus 로고
    • Potato cyst nematodes (Globodera rostochiensis and G. pallida) from Swedish potato cultivation-an AFLP study of their genetic diversity and relationships to other European populations
    • Manduric, S., and Andersson, S. 2003. Potato cyst nematodes (Globodera rostochiensis and G. pallida) from Swedish potato cultivation-an AFLP study of their genetic diversity and relationships to other European populations. Nematology, 5: 851-858.
    • (2003) Nematology , vol.5 , pp. 851-858
    • Manduric, S.1    Andersson, S.2
  • 13
    • 3843054588 scopus 로고    scopus 로고
    • Separation of Globodera rostochiensis and G. pallida (Tylenchida: Heteroderidae) using morphology and morphometrics
    • Manduric, S., Olsson, E., Englund, J.E., and Andersson, S. 2004. Separation of Globodera rostochiensis and G. pallida (Tylenchida: Heteroderidae) using morphology and morphometrics. Nematology, 6: 171-181.
    • (2004) Nematology , vol.6 , pp. 171-181
    • Manduric, S.1    Olsson, E.2    Englund, J.E.3    Andersson, S.4
  • 16
    • 21144475604 scopus 로고
    • Morphology of females and cyst of Globodera tabacum tabacum, G. t. virginiae, and G. t. solanacearum (Nemata: Heteroderinae)
    • Mota, M., and Eisenback, J. 1993. Morphology of females and cyst of Globodera tabacum tabacum, G. t. virginiae, and G. t. solanacearum (Nemata: Heteroderinae). J. Nematol. 25: 136-147.
    • (1993) J. Nematol. , vol.25 , pp. 136-147
    • Mota, M.1    Eisenback, J.2
  • 18
    • 0344043671 scopus 로고
    • The discovery of golden nematode in Newfoundland
    • Olsen, O.A and Mulvey, R.H. 1962. The discovery of golden nematode in Newfoundland. Can. Plant Dis. Surv. 45: 89.
    • (1962) Can. Plant Dis. Surv. , vol.45 , pp. 89
    • Olsen, O.A.1    Mulvey, R.H.2
  • 19
    • 44349124659 scopus 로고    scopus 로고
    • Conventional and real-time PCR-based species identification and diversity of potato cyst nematodes (Globodera spp.) from Victoria, Australia
    • Quader, M., Nambiar, L., and Cunnington, J. 2008. Conventional and real-time PCR-based species identification and diversity of potato cyst nematodes (Globodera spp.) from Victoria, Australia. Nematology, 10: 471-478.
    • (2008) Nematology , vol.10 , pp. 471-478
    • Quader, M.1    Nambiar, L.2    Cunnington, J.3
  • 20
    • 77955192971 scopus 로고    scopus 로고
    • Detection of the golden nematode, Globodera rostochiensis, in Canada 25 years after quarantine
    • 13-18 July 2008, Brisbane, Australia, Abstr
    • Rott, M., Lawrence, T. and Belton, M. 2008. Detection of the golden nematode, Globodera rostochiensis, in Canada 25 years after quarantine. In Fifth International Congress of Nematology, 13-18 July 2008, Brisbane, Australia. p. 322. [Abstr.]
    • (2008) Fifth International Congress of Nematology , pp. 322
    • Rott, M.1    Lawrence, T.2    Belton, M.3
  • 21
    • 0036730530 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection [online]
    • Simeonov, A., and Nikiforov, T.T. 2002. Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection [online]. Nucl. Acids Res. 30: e91.
    • (2002) Nucl. Acids Res. , vol.30
    • Simeonov, A.1    Nikiforov, T.T.2
  • 22
    • 34948864822 scopus 로고    scopus 로고
    • Morphological and molecular identification of Globodera pallida associated with potato in Idaho
    • Skantar, A.M., Handoo, Z.A., Carta, L.K., and Chitwood, D.J. 2007. Morphological and molecular identification of Globodera pallida associated with potato in Idaho. J. Nematol. 39: 133-144.
    • (2007) J. Nematol. , vol.39 , pp. 133-144
    • Skantar, A.M.1    Handoo, Z.A.2    Carta, L.K.3    Chitwood, D.J.4
  • 23
    • 44349126760 scopus 로고    scopus 로고
    • An internal reaction control for routine detection of Clavibacter michiganensis subsp. sepedonicus using a real-time TaqMan PCR-based assay
    • Smith, D.S., De Boer, S.H., and Gourley, J. 2008. An internal reaction control for routine detection of Clavibacter michiganensis subsp. sepedonicus using a real-time TaqMan PCR-based assay. Plant Dis. 92: 684-693.
    • (2008) Plant Dis. , vol.92 , pp. 684-693
    • Smith, D.S.1    De Boer, S.H.2    Gourley, J.3
  • 24
  • 25
    • 0034474119 scopus 로고    scopus 로고
    • Variations in ribosomal DNA sequences and phylogeny of Globodera parasitising solanaceous plants
    • Subbotin, S.A., Halford, P.D., Warry, A., and Perry, R.N. 2000. Variations in ribosomal DNA sequences and phylogeny of Globodera parasitising solanaceous plants. Nematology, 2: 591-604.
    • (2000) Nematology , vol.2 , pp. 591-604
    • Subbotin, S.A.1    Halford, P.D.2    Warry, A.3    Perry, R.N.4
  • 26
    • 27544481211 scopus 로고    scopus 로고
    • Molecular diagnostics, taxonomy and phylogeny of the stem nematode Ditylenchus dipsaci species complex based on the sequences of the internal transcribed spacerrDNA
    • Subbotin, S.A., Madani, M., Krall, E., Sturhan, D., and Moens, M. 2005. Molecular diagnostics, taxonomy and phylogeny of the stem nematode Ditylenchus dipsaci species complex based on the sequences of the internal transcribed spacerrDNA. Phytopathology, 95: 1308-1315.
    • (2005) Phytopathology , vol.95 , pp. 1308-1315
    • Subbotin, S.A.1    Madani, M.2    Krall, E.3    Sturhan, D.4    Moens, M.5
  • 28
    • 40649106867 scopus 로고    scopus 로고
    • Occurrence of potato cyst nematode, Globodera rostochiensis, on potato in the Saint-Amable region, Quebec, Canada
    • Sun, F., Miller, S., Wood, S., and Cote, M.-J. 2007. Occurrence of potato cyst nematode, Globodera rostochiensis, on potato in the Saint-Amable region, Quebec, Canada. Plant Dis. 91: 908.
    • (2007) Plant Dis. , vol.91 , pp. 908
    • Sun, F.1    Miller, S.2    Wood, S.3    Cote, M.-J.4
  • 29
    • 18944395131 scopus 로고    scopus 로고
    • Intraspecific variability within Globodera tabacum solanacearum using random amplified polymorphic DNA
    • Syracuse, A.J., Johnson, C. S., Eisenback, J.D., Nessler, C.L., and Smith, E.P. 2004. Intraspecific variability within Globodera tabacum solanacearum using random amplified polymorphic DNA. J. Nematol. 36: 433-439.
    • (2004) J. Nematol. , vol.36 , pp. 433-439
    • Syracuse, A.J.1    Johnson, C.S.2    Eisenback, J.D.3    Nessler, C.L.4    Smith, E.P.5
  • 30
    • 0030862420 scopus 로고    scopus 로고
    • Identification of cyst nematodes of agronomic and regulatory concern by PCR-RFLP of ITS1
    • Szalanski, A.L., Sui, D.D., Harris, T.S., and Powers, T.O. 1997. Identification of cyst nematodes of agronomic and regulatory concern by PCR-RFLP of ITS1. J. Nematol. 29: 255-267.
    • (1997) J. Nematol. , vol.29 , pp. 255-267
    • Szalanski, A.L.1    Sui, D.D.2    Harris, T.S.3    Powers, T.O.4
  • 31
    • 0030483782 scopus 로고    scopus 로고
    • Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of solanaceous plants
    • Thiery, M., and Mugniery, D. 1996. Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of solanaceous plants. Fundam. Appl Nematol. 19: 471-479.
    • (1996) Fundam. Appl Nematol. , vol.19 , pp. 471-479
    • Thiery, M.1    Mugniery, D.2
  • 32
    • 38049089740 scopus 로고    scopus 로고
    • Development of a real-time PCR method for the potatocyst nematode Globodera rostochiensis and the root-knot nematode Meloidogyne incognita
    • Toyota, K., Shirakashi, T., Sato, E, Wada, S., and Min, Y.Y. 2008. Development of a real-time PCR method for the potatocyst nematode Globodera rostochiensis and the root-knot nematode Meloidogyne incognita. Soil Sci. Plant Nutr. 54: 72-76.
    • (2008) Soil Sci. Plant Nutr. , vol.54 , pp. 72-76
    • Toyota, K.1    Shirakashi, T.2    Sato E3    Wada, S.4    Min, Y.Y.5
  • 33
    • 28244439219 scopus 로고    scopus 로고
    • Discrimination of three cyst-forming nematodes of the genus Globodera (Nematode: Heteroderidae) from Japan based on PCR-RFLP of ribosomal DNA
    • Uehara, T., Kushida, A., Itou, K., Narabu, T., and Momota, Y. 2005. Discrimination of three cyst-forming nematodes of the genus Globodera (Nematode: Heteroderidae) from Japan based on PCR-RFLP of ribosomal DNA. Appl. Entomol. Zool. 40: 537-543.
    • (2005) Appl. Entomol. Zool. , vol.40 , pp. 537-543
    • Uehara, T.1    Kushida, A.2    Itou, K.3    Narabu, T.4    Momota, Y.5
  • 34
    • 0001935045 scopus 로고
    • Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group
    • Vrain T.C., Wakarchuk D.A., Lévesque A.C., and Hamilton, R.L. 1992. Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundam. Appl. Nematol. 15: 563-573.
    • (1992) Fundam. Appl. Nematol. , vol.15 , pp. 563-573
    • Vrain, T.C.1    Wakarchuk, D.A.2    Lévesque, A.C.3    Hamilton, R.L.4
  • 35
    • 0033239826 scopus 로고    scopus 로고
    • Effect of tobacco cyst nematode on growth of flue-cured tobacco
    • Wang, J., Johnson, C.S. Eisenback, J.D., and Reed, T.D. 1999. Effect of tobacco cyst nematode on growth of flue-cured tobacco. J. Nematol. 31: 326-333.
    • (1999) J. Nematol. , vol.31 , pp. 326-333
    • Wang, J.1    Johnson, C.S.2    Eisenback, J.D.3    Reed, T.D.4
  • 36
    • 0027138482 scopus 로고
    • Separation of three species of Ditylenchus and some host races of D. dipsaci by restriction fragment polymorphism
    • Wendt, K.R., Vrain, T.C., and Webster, J.M. 1993. Separation of three species of Ditylenchus and some host races of D. dipsaci by restriction fragment polymorphism. J. Nematol. 25: 555-563.
    • (1993) J. Nematol. , vol.25 , pp. 555-563
    • Wendt, K.R.1    Vrain, T.C.2    Webster, J.M.3
  • 37
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Edited by M.A. Innes, D.H. Gelfard, J.J. Sninsky, and T.J. Wite. Academic Press, San Diego, Calif
    • White, T.J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols. A guide to methods and applications. Edited by M.A. Innes, D.H. Gelfard, J.J. Sninsky, and T.J. Wite. Academic Press, San Diego, Calif. pp. 315-322.
    • (1990) PCR Protocols. A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 38
    • 33646849284 scopus 로고    scopus 로고
    • Design of LNA probes that improve mismatch discrimination [online]
    • You, Y., Moreira, B.G., Behike, M.A., and Owczarzy, R. 2006. Design of LNA probes that improve mismatch discrimination [online]. Nucl. Acids Res. 34: e60.
    • (2006) Nucl. Acids Res. , vol.34
    • You, Y.1    Moreira, B.G.2    Behike, M.A.3    Owczarzy, R.4
  • 39
    • 0030883243 scopus 로고    scopus 로고
    • A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi and M. fallax, and to sensitively differentiate them from each other and from M. incognita in mixtures
    • Zijlstra, C.A. 1997. A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi and M. fallax, and to sensitively differentiate them from each other and from M. incognita in mixtures. Fundam. Appl. Nematol. 20: 505-511.
    • (1997) Fundam. Appl. Nematol. , vol.20 , pp. 505-511
    • Zijlstra, C.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.