Morphological and molecular identification of Globodera pallida associated with potato in Idaho

Journal of Nematology

Volumn 39, Issue 2, 2007, Pages 133-144

  Skantar, A M ^a   Handoo, Z A ^b   Carta, L K ^b   Chitwood, D J ^b  

^a Molecular Plant Pathology Laboratory   (United States)

^b Nematology Laboratory   (United States)

Author keywords

Detection; Diagnosis; Globodera; Molecular biology; Morphology; Nicotiana tabacum; PCR; Potato; rDNA; RFLP; Solanum tuberosum; Taxonomy

Indexed keywords

GLOBODERA; GLOBODERA PALLIDA; GLOBODERA ROSTOCHIENSIS; GLOBODERA TABACUM; NICOTIANA TABACUM; SOLANUM TUBEROSUM;

EID: 34948864822     PISSN: 0022300X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (52)

1. Agricultural Statistics Board. 2006. Potatoes 2005 Summary Report. United States Department of Agriculture, National Agricultural Statistics Service.
2. Baldwin, J. G., and Mundo-Ocampo, M. 1991. Heteroderinae, Cyst-and Non-cyst-forming Nematodes. Pp. 275-362 in W. R. Nickle, ed. Manual of Agricultural Nematology. New York: Marcel Dekker.
3. Bélair, G., and Miller, S. 2006. First report of Globodera tabacum infecting tobacco plants in Quebec, Canada. Plant Disease 90:527.
4. Blok, V. C., Malloch, G., Harrower, B., Phillips, M. S., and Vrain, T. C. 1998. Intraspecific variation in ribosomal DNA in populations of the potato cyst nematode Globodera pallida. Journal of Nematology 30:262-274.
5. Brzeski, M. W. 1998. Nematodes of Tylenchina in Poland and temperate Europe. Warsaw, Poland, Muzeum I Instytut Zoologii Polska Akademia Nauk, 396 pp.
6. Bulman, S. R., and Marshall, J. W. 1997. Differentiation of Australasian potato cyst nematode (PCN) populations using the polymerase chain reaction (PCR). New Zealand Journal of Crop and Horticultural Science 25:123-129.
7. Campos-Vela, A. 1967. Taxonomy, life cycle and host range of Heterodera mexicanan. sp. (Nematoda: Heteroderidae). Ph.D. thesis, University of Wisconsin, Madison, WI.
8. EPPO. 2004. Diagnostic protocols for regulated pests, Globodera rostochiensis and Globodera pallida. EPPO Bulletin 34:309-314.
9. Eroshenko, A. S., and Kasachenko, I. P. 1972. Heterodera artemisiae sp. n. (Nematoda: Heteroderidae) - a new cyst-forming nematode species from the Primorsk Territory. Parazitologiya 6:166-170 (In Russian).
10. Ferris, V. R., Miller, L. I., Faghihi, J., and Ferris, J. M. 1995. Ribosomal DNA comparisons of Globodera from two continents. Journal of Nematology 27:273-283.
11. Fleming, C. C., and Powers, T. O. 1998. Potato cyst nematode diagnostics: Morphology, differential hosts and biochemical techniques. Pp. 91-114 in R. J. Marks and B. B. Brodie, eds. Potato cyst nematodes, Biology, Distribution and Control. Oxon, UK: CAB International.
12. Golden, A. M. 1986. Morphology and identification of cyst nematodes. Pp. 23-45 in F. Lamberti and C. E. Taylor, eds. Cyst Nematodes. New York: Plenum Press.
13. Golden, A. M. 1990. Preparation and mounting nematodes for microscopic observations. Pp. 197-205 in B. M. Zuckerman, W. F. Mai and L. R. Krusberg, eds. Plant Nematology Laboratory Manual. Amherst: University of Massachusetts Agricultural Experiment Station.
14. Golden, A. M., and Klindić, O. 1973. Heterodera achilleae n. sp. (Nematoda: Heteroderidae) from yarrow in Yugoslavia. Journal of Nematology 5:196-201.
15. Greiner, E., Bossis, M. Fouville, D., Renault, L., and Mugniéry, D. 2001. Molecular approaches to the taxonomic position of Peruvian potato cyst nematodes and gene pool similarities in indigenous and imported populations of Globodera. Heredity 86:277-290.
16. Hafez, S. L., Sundararaj, P., Handoo, Z. A., Skantar, A. M., Carta, L. K., and Chitwood, D. J. 2007. First report of the pale cyst nematode, Globodera pallida, in the United States. Plant Disease 91:325.
17. Hasegawa, M., Kishino, H., and Yano, T. 1985. Dating the humanape split by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.
18. Hesling, J. J., 1973. The estimation of Granek's ratio in round-cyst Heteroderas. Nematologica 19:119.
19. Hooper, D. J. 1970. Handling, fixing, staining and mounting nematodes. Pp. 59-80 in J. F. Southey, ed. Laboratory methods for work with plant and soil nematodes. 5th edition. London: Her Majesty's Stationery Office.
20. Howlett, B. J., Brownlee, A. G., Guest, D. I., Adcock, G. J., and McFadden, G. I. 1992. The 5S ribosomal RNA gene is linked to large and small subunit ribosomal RNA genes in the oomycetes, Phytopthora vignae, P. cinnamomi, P. megaspera f. sp. glycinae and Saprolegnia ferax. Current Genetics 22:455-461.
21. Ibrahim, S. K., Minnis, S. T., Barker, A. D. P., Russell, M. D., Haydock, P. P. J., Evans, K., Grove, I. G., Woods, S. R., and Wilcox, A. 2001. Evaluation of PCR, IEF and ELISA techniques for the detection and identification of potato cyst nematodes from field soil samples in England and Wales. Pest Management Science 57:1068-1074.
22. Joyce, S. A., Reid, A., Driver, F., and Curran, J. 1994. Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes. Pp. 178-187 in A. M. Burnell, R.-U. Ehlers and J. P. Masson, eds. COST 812 Biotechnology: Genetics of Entomopathogenic Nematode-Bacterium Complexes. Proceedings of Symposium & Workshop, St. Patrick's College, Maynooth, County Kildare, Ireland. Luxembourg: European Commission, DG XII.
23. Lownsbery, B. F., and Lownsbery, J. W. 1954. Heterodera tabacum new species, a parasite of solanaceous plants in Connecticut. Proceedings of the Helminthological Society of Washington 21:42-47.
24. Manduric, S., Olsson, E., Englund, J.-E., and Andersson, S. 2004. Separation of Globodera rostochiensis and G. pallida (Tylenchida: Heteroderidae) using morphology and morphometrics. Nematology 6: 171-182.
25. Marché, L., Valette, S., Grenier, E., and Mugniéry, D. 2001. Intraspecies DNA polymorphism in the tobacco cyst-nematode complex (Globodera tabacum) using AFLP. Genome 44:941-946.
26. Marks, R. J., and Brodie, B. B. 1998. Potato cyst nematodes: Biology, distribution and control. Wallingford, UK: CAB International.
27. Miller, L. I. 1983. Diversity of selected taxa of Globodera and Heterodera and their interspecific and intergeneric hybrids. Pp. 207-220 in A. R. Stone, H. M. Platt and L. F. Khalil, eds. Concepts in nematode systematics. The Systematics Association Special Volume No. 22. New York: Academic Press.
28. Miller, L. I., and Gray, B. J. 1968. Horsenettle cyst nematode, Heterodera virginiae n.sp., a parasite of solanaceous plants. Nematologica 14:535-543.
29. Miller, L. I., and Gray, B. J. 1972. Heterodera solanacearum n. sp., a parasite of solanaceous plants. Nematologica 18:404-413.
30. Mota, M., and Eisenback, J. D. 1993a. Morphology of second-stage juveniles and males of Globodera tabacum tabacum, G. t. virginiae, and G. t. solanacearum (Nemata: Heteoderinae). Journal of Nematology 25:27-33.
31. Mota, M., and Eisenback, J. D. 1993b. Morphology of females and cysts of Globodera tabacum tabacum, G. t. virginiae, and G. t. solanacearum (Nemata: Heteoderinae). Journal of Nematology 25:136-147.
32. Mota, M., and Eisenback, J. D. 1993c. Morphometrics of Globodera tabacum tabacum, G. t. virginiae, and G. t. solanacearum (Nemata: Heteoderinae). Journal of Nematology 25:148-160.
33. Nicholas, K. B., Nicholas, H. B., Jr., and Deerfield, D. W., II. 1997. GeneDoc: Analysis and visualization of genetic variation. EMB-NEW.NEWS 4:1-4. http://www.psc.edu/biomed/genedoc.
34. Othman, A. A., Baldwin, J. G., and Mundo-Ocampo, M. 1988. Comparative morphology of Globodera, Cactodera, and Punctodera spp. (Heteroderidae) with scanning electron microscopy. Revue de Nématologie 11:53-63.
35. Parrot, D. M., and Miller, L. I. 1977. NC-95 flue-cured tobacco as a host of Globodera pallida (abstract) Virginia Journal of Science 28:54.
36. Posada, D., and Crandall, K. A. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50:580-601.
37. Pylypenko, L. A., Uehara, T., Phillips, M. S., Sigareva, D. D., and Blok, V. C. 2005. Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology 111:39-46.
38. Radivojevic, M., Krnjaic, D., Krnjaic, S., Bacic, J., Subbotin, S. A., Madani, M., and Moens, M. 2001. Molecular methods confirming the presence of Globodera rostochiensis (Wollenweber, 1923) in Yugoslavia. Russian Journal of Nematology 9:139-141.
39. Reid, A., and Pickup, J. 2005. Molecular characterization of a morphologically unusual potato cyst nematode. Bulletin OEPP/EPPO Bulletin 35:69-72.
40. Sirca, S., and Urek, G. 2004. Morphometrical and ribosomal DNA sequence analysis of Globodera rostochiensis and Globodera achilleae from Slovenia. Russian Journal of Nematology 12:161-168.
41. Stone, A. R. 1972. The round cyst species of Heterodera as a group. Annals of Applied Biology 71:280-283.
42. Stone, A. R. 1973. Heterodera pallida n. sp. (Nematoda: Heteroderidae), a second species of potato cyst nematode. Nematologica 18: 591-606.
43. Stone, A. R. 1983. Three approaches to the status of a species complex, with a revision of some species of Globodera (Nematoda: Heteroderidae). Pp. 221-223 in A. R. Stone, H. M. Platt and L. F. Khalil, eds. Concepts in Nematode Systematics, Systematics Association Special Volume No. 22. London: Academic Press.
44. Stone, A. R., and Miller, L. I. 1974. Multiplication of Heterodera solanacearum on potatoes. Nematology Department, Rothamsted Report for 1973, p. 155-156.
45. Subbotin, S. A., Halford, P. D., Warry, A., and Perry, R. N. 2000. Variations in ribosomal DNA sequences and phylogeny of Globodera parasitizing solanaceous plants. Nematology 2:591-604.
46. Swofford, D. L. 1998. PAUP* Phylogenetic Analysis Using Parsimony (*and other methods). Version 4.0, Sunderland, MA: Sinauer Associates.
47. Syracuse, A. J., Johnson, C. S., Eisenback, J. D., Nessler, C. L., and Smith, E. P. 2004. Intraspecific variability within Globodera tabacum solanacearum using random amplified polymorphic DNA. Journal of Nematology 36:433-439.
48. Thiéry, M., and Mugniéry, D. 1996. Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants. Fundamental and Applied Nematology 19:471-479.
49. Thomas, W. K., Vida, J. T., Frisse, L. M., Mundo, M., and Baldwin, J. G. 1997. DNA sequences from formalin fixed nematodes: Integrating molecular and morphological approaches to taxonomy. Journal of Nematology 29:250-254.
50. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673-4680.
51. Uehara, T., Kushida, A., Itou, K., Narabu, T., and Momota, Y. 2005. Discrimination of three cyst-forming nematodes of the genus Globodera (Nematode: Heteroderidae) from Japan based on PCR-RFLP of ribosomal DNA. Applied Entomology and Zoology 40:537-543.
52. White, T. J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in M. A. Innes, D. H. Gelfard, J. J. Sninsky and T. J. White, eds. PCR protocols. A guide to methods and applications. San Diego: Academic Press.