An evaluation of qualitative indexes of physical habitat applied to agricultural streams in ten U.S. States

Journal of the American Water Resources Association

Volumn 46, Issue 4, 2010, Pages 792-806

  Hughes, Robert M ^a   Herlihy, Alan T ^b   Kaufmann, Philip R ^a,c  

^a OREGON STATE UNIVERSITY   (United States)

^b FEDERAL UNIVERSITY OF LAVRAS   (Brazil)

^c U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

Author keywords

Aquatic surveys; Environmental indicators; Environmental Monitoring and Assessment Program; Environmental sampling; Fish and macroinvertebrate assemblages; Qualitative habitat evaluation index; Qualitative physical habitat assessment; Rapid bioassessment protocol; Stream monitoring and assessment; Stream visual assessment protocol

Indexed keywords

ENVIRONMENTAL INDICATORS; ENVIRONMENTAL MONITORING AND ASSESSMENT PROGRAMS; ENVIRONMENTAL SAMPLING; EVALUATION INDEX; MACROINVERTEBRATE ASSEMBLAGE; PHYSICAL HABITAT; RAPID BIOASSESSMENT PROTOCOLS; STREAM MONITORING AND ASSESSMENT; VISUAL ASSESSMENTS;

CONSERVATION; ENVIRONMENTAL IMPACT ASSESSMENTS; ENVIRONMENTAL PROTECTION AGENCY; FISH; HYDRAULICS; MONITORING; QUALITY CONTROL; SAMPLING; SURVEYS; SUSTAINABLE DEVELOPMENT;

ECOLOGY;

BIOASSAY; BIOTIC FACTOR; ENVIRONMENTAL MONITORING; HABITAT MANAGEMENT; HABITAT QUALITY; MACROINVERTEBRATE; QUALITATIVE ANALYSIS; SAMPLING;

UNITED STATES;

EID: 77955129488     PISSN: 1093474X     EISSN: 17521688     Source Type: Journal    
DOI: 10.1111/j.1752-1688.2010.00455.x     Document Type: Article

References (80)

1. Angermeier PL, Smogor RA. Estimating Number of Species and Relative Abundances in Stream-Fish Communities: Effects of Sampling Effort and Discontinuous Spatial Distributions. Canadian Journal of Fisheries and Aquatic Sciences 1995, 52(5):936-949.
2. Araujo FG, Fichberg I, Pinto BCT, Peixoto MG. A Preliminary Index of Biotic Integrity for Monitoring Condition of the Rio Paraiba do Sul, Southeast Brazil. Environmental Management 2003, 32(5):516-526.
3. Barbour MT, Gerritsen J, Snyder BD, Stribling JB. Rapid Bioassessment Protocols for Use in Streams and Wadeable Rivers: Periphyton, Benthic Macroinvertebrates, and Fish, Second edition 1999, http://www.epa.gov/owow/monitoring/rbp/, EPA 841-B-99-002, U.S. Environmental Protection Agency, Office of Water, Washington, D.C, June 2010
4. Bathurst JC. Discussion of " Bar Resistance of Gravel-Bed Streams" Journal of the Hydraulics Division of the American Society of Civil Engineers 1981, 107(10):1276-1278.
5. Binns NA. A Habitat Quality Index for Wyoming Trout Streams 1979, Fisheries Research Report Monograph Series Number 2, Wyoming Game and Fish Department, Cheyenne, Wyoming
6. Bonar S, Hubert WA. Standard Sampling of Inland Fish: Benefits, Challenges, and a Call for Action. Fisheries 2002, 27(3):10-16.
7. Bovee KD. Development and Evaluation of Habitat Suitability Criteria for Use in the Instream Flow Incremental Methodology 1986, Instream Flow Information Paper No. 21 FWS/OBS-86/7, U.S. Fish and Wildlife Service, Washington, D.C
8. Bryce SA, Lomnicky GA, Kaufmann PR. Protecting Sediment-Sensitive Aquatic Species in Mountain Streams Through the Application of Biologically Based Streambed Sediment Criteria. Journal of the North American Benthological Society 2010, 29(2):657-672.
9. Bryce SA, Lomnicky GA, Kaufmann PR, McAllister LS, Ernst TL. Development of Biologically Based Sediment Criteria in Mountain Streams of the Western United States. North American Journal of Fisheries Management 2008, 28:1714-1724.
10. Water Quality - Sampling of Fish With Electricity 2003, Comité Européen de Normalisation, European Standard - EN 14011:2003(E), Brussels, Belgium
11. Cooke HA, Zack S. Use of Standardized Visual Assessments of Riparian and Stream Condition to Manage Riparian Bird Habitat in Eastern Oregon. Environmental Management 2009, 44(1):173-184.
12. Dauwalter DC, Pert EJ. Effect of Electrofishing Effort on an Index of Biotic Integrity. North American Journal of Fisheries Management 2003a, 23(4):1247-1252.
13. Dauwalter DC, Pert EJ. Electrofishing Effort and Fish Species Richness and Relative Abundance in Ozark Highland Streams in Arkansas. North American Journal of Fisheries Management 2003b, 23(4):1152-1156.
14. Davis W, Scott J. Mid-Atlantic Highlands Streams Assessment: Technical Support Document 2000, http://www.epa.gov/nscep/, EPA/903/B-00/004, U.S. Environmental Protection Agency, Fort Meade, Maryland, pp. , June 2010
15. Faustini JM, Kaufmann PR. Adequacy of Visually Classified Particle Count Statistics From Regional Stream Habitat Surveys. Journal of the American Water Resources Association 2007, 43(5):1293-1315.
16. Fitzpatrick FA, Waite IR, D'Arconte PJ, Meador MR, Maupin MA, Gurtz ME. Revised Methods for Characterizing Stream Habitat in the National Water-Quality Assessment Program 1998, http://pubs.usgs.gov/wri/wri984052/pdf/wri98-4052.pdf, Water-Resources Investigations Report 98-4052, U.S. Geological Survey, Raleigh, North Carolina, pp. , June 2010
17. Frissell CA, Liss WL, Warren CE, Hurley MC. A Hierarchical Framework for Stream Habitat Classification, Viewing Streams in a Watershed Context. Environmental Management 1986, 10(2):199-214.
18. Gallo K. Aquatic and Riparian Effectiveness Monitoring Program for the Northwest Forest Plan 2002, U.S. Forest Service, Corvallis, Oregon
19. Ganasan V, Hughes RM. Application of an Index of Biological Integrity (IBI) to Fish Assemblages of the Rivers Khan and Kshipra (Madhya Pradesh), India. Freshwater Biology 1998, 40(2):367-383.
20. Griffith MB, Husby P, Hall RK, Kaufmann PR, Hill BH. Analysis of Macroinvertebrate Assemblages in Relation to Environmental Gradients Among Lotic Habitats of California's Central Valley. Environmental Monitoring and Assessment 2003, 82(3):281-309.
21. Hankin DG, Reeves GH. Estimating Total Fish Abundance and Total Habitat Area in Small Streams Based on Visual Estimation Methods. Canadian Journal of Fisheries and Aquatic Sciences 1988, 45(5):834-844.
22. Hannaford MJ, Resh VH. Variability in Macroinvertebrate Rapid-Bioassessment Surveys and Habitat Assessments in a Northern California Stream. Journal of the North American Benthological Society 1995, 14(3):430-439.
23. Heitke JD, Pierce CL, Gelwicks GT, Simmons GA, Siegwarth GL. Habitat, Land Use, and Fish Assemblage Relationships in Iowa Streams: Preliminary Assessment in an Agricultural Landscape. Landscape Influences on Stream Habitats and Biological Assemblages 2006, 287-303. Hughes RM, Wang L, Seelbach PW, Editors, Symposium 48, American Fisheries Society, Bethesda, Maryland
24. Henderson RC, Archer EK, Bouwes BA, Coles-Ritchie MS, Kershner JL. PACFISH/INFISH Biological Opinion (PIBO): Effectiveness Monitoring Program Seven-Year Status Report 1998 Through 2004 2005, General Technical Report RMRS-GTR-162, U.S. Forest Service, Fort Collins, Colorado
25. Hughes RM, Howlin S, Kaufmann PR. A Biointegrity Index for Coldwater Streams of Western Oregon and Washington. Transactions of the American Fisheries Society 2004, 133(6):1497-1515.
26. Hughes RM, Larsen DP, Omernik JM. Regional Reference Sites: A Method for Assessing Stream Potentials. Environmental Management 1986, 10(5):629-635.
27. Hughes RM, Peck DV. Acquiring Data for Large Aquatic Resource Surveys: The Art of Compromise Among Science, Logistics, and Reality. Journal of the North American Benthological Society 2008, 27(4):837-859.
28. Landscape Influences on Stream Habitats and Biological Assemblages 2006, Hughes RMWang LSeelbach PW. Editors, Symposium 48, American Fisheries Society, Bethesda, Maryland
29. Hugueny B, Camara S, Samoura B, Magassouba M. Applying an Index of Biotic Integrity on Fish Assemblages in a West Africa River. Hydrobiologia 1996, 331(1):71-78.
30. Hynes HBN. The Biology of Polluted Waters 1960, Liverpool University Press, Liverpool, United Kingdom
31. Jungwirth M, Haidvogl G, Moog O, Muhar S, Schmutz S. Angewandte Fischökologie an Fließgewässern 2003, Facultas Verlags- und Buchhandels, Wien, Österreich
32. Karr JR, Dudley DR. Ecological Perspectives on Water Quality Goals. Environmental Management 1981, 5(1):55-68.
33. Kaufmann PR. Channel Morphology and Hydraulic Characteristics of Torrent-Impacted Forest Streams in the Oregon Coast Range, U.S.A 1987, Ph.D. Dissertation, Department of Forest Hydrology, Oregon State University, Corvallis
34. Kaufmann PR, Faustini JM, Larsen DP, Shirazi MA. A Roughness-Corrected Index of Relative Bed Stability for Regional Stream Surveys. Geomorphology 2008, 99:150-170.
35. Kaufmann PR, Herlihy AT, Elwood JW, Mitch ME, Overton WS, Sale MJ, Messer JJ, Cougan KA, Peck DV, Reckhow KH, Kinney AJ, Christie SJ, Brown DD, Hagley CA, Jager HI. Chemical Characteristics of Streams in the Mid-Atlantic and Southeastern United States. Volume I: Population Descriptions and Physico-Chemical Relationships 1988, EPA 600/3-88/021a, Office of Research and Development, U.S. Environmental Protection Agency, Washington, D.C
36. Kaufmann PR, Hughes RM. Geomorphic and Anthropogenic Influences on Fish and Amphibians in Pacific Northwest Coastal Streams. Landscape Influences on Stream Habitats and Biological Assemblages 2006, 429-455. Hughes RM, Wang LSeelbach PW. Editors). Symposium 48, American Fisheries Society, Bethesda, Maryland
37. Kaufmann PR, Larsen DP, Faustini JM. Bed Stability and Sedimentation Associated With Human Disturbances in Pacific Northwest Streams. Journal of the American Water Resources Association 2009, 45:434-459.
38. Kaufmann PR, Levine P, Robison EG, Seeliger C, Peck DV. Quantifying Physical Habitat in Wadeable Streams 1999, http://www.epa.gov/emap/html/pubs/docs/groupdocs/surfwatr/field/phyhab.html, EPA 620/R-99/003, U.S. Environmental Protection Agency, Washington, D.C., pp. , June 2010
39. Keup LE, Ingram WM, Mackenthun KM. Biology of Water Pollution 1967, Compilers, Federal Water Pollution Control Administration, U.S. Department of the Interior, Cincinnati, Ohio
40. Klemm DJ, Blocksom KA, Fulk FA, Herlihy AT, Hughes RM, Kaufmann PR, Peck DV, Stoddard JL, Thoeny WT, Griffith MB, Davis WS. Development and Evaluation of a Macroinvertebrate Biotic Integrity Index (MBII) for Regionally Assessing Mid-Atlantic Highlands Streams. Environmental Management 2003, 31(5):656-669.
41. Lisle TE. Effects of Aggradation and Degradation on Riffle-Pool Morphology in Natural Gravel Channels, Northwestern California. Water Resources Research 1982, 18(6):1643-1651.
42. Lyons J. The Length of Stream to Sample With a Towed Electrofishing Unit When Fish Species Richness is Estimated. North American Journal of Fisheries Management 1992, 12(1):198-203.
43. McCormick FH, Hughes RM, Kaufmann PR, Peck DV, Stoddard JL, Herlihy AT. Development of an Index of Biotic Integrity for the Mid-Atlantic Highlands Region. Transactions of the American Fisheries Society 2001, 130(5):857-877.
44. Meador MR, Hupp CR, Cuffney TF, Gurtz ME. Methods for Characterizing Stream Habitat as Part of the National Water-Quality Assessment Program 1993, Open-File Report 93-408, U.S. Geological Survey, Raleigh, North Carolina
45. Stream Visual Assessment Protocol 1998, Natural Resources Conservation Service, Technical Note 99-1, Natural Resources Conservation Service, Washington, D.C.
46. Stream Visual Assessment Protocol 2 2009, Natural Resources Conservation Service, Natural Resources Conservation Service, Washington, D.C.
47. Omernik JM. Ecoregions of the Conterminous United States. Annals of the Association of American Geographers 1987, 77(1):118-125.
48. Paller MH. Relationships Among Number of Fish Species Sampled, Reach Length Surveyed, and Sampling Effort in South Carolina Coastal Plain Streams. North American Journal of Fisheries Management 1995, 15(1):110-120.
49. Pan Y, Herlihy A, Kaufmann P, Wigington J, Van Sickle J, Moser T. Linkages Among Land-Use, Water Quality, Physical Habitat Conditions and Lotic Diatom Assemblages: A Multi-Spatial Scale Assessment. Hydrobiologia 2004, 515(1):59-73.
50. Paulsen SG, Maio A, Peck DV, Stoddard JL, Tarquinio E, Holdsworth SM, Van Sickle J, Yuan LL, Hawkins CP, Herlihy AT, Kaufmann PR, Barbour MT, Larsen DP, Olsen AR. Condition of Stream Ecosystems in the US: An Overview of the First National Assessment. Journal of the North American Benthological Society 2008, 27(4):812-821.
51. Peck DV, Herlihy AT, Hill BH, Hughes RM, Kaufmann PR, Klemm DJ, Lazorchak JM, McCormick FH, Peterson SA, Ringold PL, Magee T, Cappaert MR. Environmental Monitoring and Assessment Program-Surface Waters: Western Pilot Study Field Operations Manual for Wadeable Streams 2006, http://www.epa.gov/wed/pages/publications/authored/EPA620R-06003EMAPSWFieldOperationsManualPeck.pdf, EPA/620/R-06/003, USEPA, Washington, D.C., pp. , June 2010
52. Plafkin JL, Barbour MT, Proter KD, Gross SK, Hughes RM. Rapid Bioassessment Protocols for Use in Streams and Rivers: Benthic Macroinvertebrates and Fish 1989, EPA 440/4-89/001, U.S. Environmental Protection Agency, Washington, D.C.
53. Platts WS. Stream Inventory Garbage In-Reliable Analyses Out: Only in Fairy Tales. Acquisition and Utilization of Aquatic Habitat Inventory Information 1981, 75-84. Armantrout NB. Editor, Western Division American Fisheries Society, Bethesda, Maryland
54. Platts WS, Megahan WF, Minshall GW. Methods for Evaluating Stream, Riparian, and Biotic Conditions 1983, General Technical Report INT-138, U.S. Forest Service, Ogden, Utah
55. Pont D, Hugueny B, Beier U, Goffaux D, Melcher A, Noble R, Rogers C, Roset N, Schmutz S. Assessing River Biotic Condition at the Continental Scale: A European Approach Using Functional Metrics and Fish Assemblages. Journal of Applied Ecology 2006, 43(1):70-80.
56. Ralph SC, Poole GC, Conquest LL, Naiman RJ. Stream Channel Morphology and Woody Debris in Logged and Unlogged Basins of Western Washington. Canadian Journal of Fisheries and Aquatic Sciences 1994, 51(1):37-51.
57. Rankin ET. The Qualitative Habitat Evaluation Index (QHEI), Rationale, Methods, and Application 1989, Ohio EPA, Columbus, Ohio
58. Rankin ET. Habitat Indices in Water Resource Quality Assessments. Biological Assessment and Criteria: Tools for Water Resource Planning and Decision Making 1995, 181-208. Davis WSSimon TP. Editors, Lewis Publishers, Boca Raton, Florida
59. Rankin ET. Methods for Assessing Habitat in Flowing Waters: Using the Qualitative Habitat Evaluation Index (QHEI) 2006, Technical Report EAS/2006-06-01, Ohio EPA, Groveport, Ohio
60. Reynolds L, Herlihy AT, Kaufmann PR, Gregory SV, Hughes RM. Electrofishing Effort Requirements for Assessing Species Richness and Biotic Integrity in Western Oregon Streams. North American Journal of Fisheries Management 2003, 23(2):450-461.
61. Robison EG, Kaufmann PR. Evaluating Two Objective Techniques to Define Pools in Small Streams. Effects of Human Induced Changes on Hydrologic Systems 1994, 659-668. Marston RA, Hasfurther VA. Editors), Summer Symposium Proceedings, American Water Resources Association, June 26-29, Jackson Hole, Wyoming
62. Roper BB, Buffington JM, Bennett S, Lanigan SH, Archer E, Downie ST, Faustini J, Hillman TW, Hubler S, Jones K, Jordan C, Kaufmann PR, Merritt G, Moyer C, Pleus A. A Comparison of the Performance and Compatability of Protocols Used by Seven Monitoring Groups to Measure Stream Habitat in the Pacific Northwest. North American Journal of Fisheries Management 2010, 30(2):565-587.
63. Roper BR, Scarnecchia DL. Observer Variability in Classifying Habitat Types in Stream Surveys. North American Journal of Fisheries Management 1995, 15(1):49-53.
64. Roth NE, Allan JD, Erickson DL. Landscape Influences on Stream Biotic Integrity Assessed at Multiple Spatial Scales. Landscape Ecology 1996, 11(3):141-156.
65. Schamberger M, Farmer AH, Terrell JW. Habitat Suitability Index Models: An Introduction 1982, 2. FWS/OBS-82/10, U.S. Fish and Wildlife Service, Washington, D.C.
66. Stoddard JL, Herlihy AT, Hill BH, Hughes RM, Kaufmann PR, Klemm DJ, Lazorchak JM, McCormick FH, Peck DV, Paulsen SG, Olsen AR, Larsen DP, Van Sickle J, Whittier TR. Mid-Atlantic Integrated Assessment (MAIA): State of the Flowing Waters Report 2006a, http://www.epa.gov/emap/html/pubs/docs/groupdocs/surfwatr/flowingwater.html, EPA/620/R-06/001, U.S. Environmental Protection Agency, Washington, D.C., pp. , June 2010
67. Stoddard JL, Herlihy AT, Peck DV, Hughes RM, Whittier TR, Tarquinio E. A Process for Creating Multimetric Indices for Large-Scale Aquatic Surveys. Journal of the North American Benthological Society 2008, 27(4):878-891.
68. Stoddard JL, Larsen DP, Hawkins CP, Johnson RK, Norris RH. Setting Expectations for the Ecological Condition of Running Waters: The Concept of Reference Condition. Ecological Applications 2006b, 16(4):1267-1276.
69. Stoddard JL, Peck DV, Olsen AR, Larsen DP, VanSickle J, Hawkins CP, Hughes RM, Whittier TR, Lomnicky G, Herlihy AT, Kaufmann PR, Peterson SA, Ringold PL, Paulsen SG, Blair R. Environmental Monitoring and Assessment Program (EMAP) Western Streams and Rivers Statistical Summary 2005a, http://www.epa.gov/emap/west/html/docs/wstream.html, EPA 620/R-05/006, U.S. Environmental Protection Agency, Washington, D.C., pp. , June 2010
70. Stoddard JL, Peck DV, Paulsen SG, Van Sickle J, Hawkins CP, Herlihy AT, Hughes RM, Kaufmann PR, Larsen DP, Lomnicky G, Olsen AR, Peterson SA, Ringold PL, Whittier TR. An Ecological Assessment of Western Streams and Rivers 2005b, http://www.epa.gov/emap/west/html/docs/wstriv.html, EPA 620/R-05/005, U.S. Environmental Protection Agency, Washington, D.C., pp. , June 2010
71. Handbook of Methods for Acid Deposition Studies: Laboratory Analyses for Surface Water Chemistry 1987, U.S. Environmental Protection Agency, EPA/600/4-87/026, U.S. Environmental Protection Agency, Washington, D.C
72. Van Sickle J, Baker J, Herlihy A, Bayley P, Gregory S, Haggerty P, Ashkenas L, Li J. Projecting the Biological Condition of Streams Under Alternative Scenarios of Human Land Use. Ecological Applications 2004, 14(2):368-380.
73. Wang L, Lyons J, Kanehl P, Gatti R. Influence of Watershed Land Use on Habitat Quality and Biotic Integrity in Wisconsin Streams. Fisheries 1997, 22(6):6-12.
74. Wang L, Seelbach PW, Lyons J. Effects of Levels of Human Disturbance on the Influence of Catchment, Riparian, and Reach-Scale Factors on Fish Assemblages. Landscape Influences on Stream Habitats and Biological Assemblages 2006, 199-219. Hughes RM, Wang L, Seelbach PW. Editors). Symposium 48, American Fisheries Society, Bethesda, Maryland
75. Ward TA, Tate KW, Atwill ER, Lile DF, Lancaster DL, McDougald N, Barry S, Ingram RS, George HA, Jensen W, Frost WE, Phillips R, Markegard GG, Larsen S. A Comparison of Three Visual Assessments for Riparian and Stream Health. Journal of Soil and Water Conservation 2003, 58(2):83-88.
76. Warren CE. Biology and Water Pollution Control 1971, Saunders, Philadelphia, Pennsylvania
77. Whitacre HW, Roper BB, Kershner JL. A Comparison of Protocols and Observer Precision for Measuring Physical Stream Attributes. Journal of the American Water Resources Association 2007, 43(4):1-15.
78. Whittier TR, Hughes RM, Lomnicky GA, Peck DV. Fish and Amphibian Tolerance Values and an Assemblage Tolerance Index for Streams and Rivers in the Western USA. Transactions of the American Fisheries Society 2007a, 136(1):254-271.
79. Whittier TR, Hughes RM, Stoddard JL, Lomnicky GA, Peck DV, Herlihy AT. A Structured Approach for Developing Indices of Biotic Integrity - Three Examples From Western Streams and Rivers in the USA. Transactions of the American Fisheries Society 2007b, 136(3):718-735.
80. River Ecology 1975, Whitton BA. Editor, University of California Press, Berkeley, California