Development of the molecular methods for rapid detection and differentiation of Fusarium oxysporum and F. oxysporum f. sp. niveum in Taiwan

New Biotechnology

Volumn 27, Issue 4, 2010, Pages 409-418

  Lin, Ying Hong ^a   Chen, Kan Shu ^b   Chang, Jing Yi ^a   Wan, Yu Ling ^a   Hsu, Ching Chi ^a   Huang, Jenn Wen ^a   Chang, Pi Fang Linda ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b TAIWAN AGRICULTURAL RESEARCH INSTITUTE   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DIAGNOSIS; PATHOGENS; POLYMERASE CHAIN REACTION;

AMPLIFIED FRAGMENTS; DISEASE DEVELOPMENT; DISEASE DIAGNOSIS; DNA CONCENTRATION; FUSARIUM OXYSPORUMS; INTEGRATED DISEASE MANAGEMENTS; MOLECULAR METHODS; PATHOGEN IDENTIFICATION;

FUNGI;

PRIMER DNA; GENETIC MARKER;

ARTICLE; CLINICAL EVALUATION; DNA FINGERPRINTING; DNA ISOLATION; FUNGAL DETECTION; FUSARIUM OXYSPORUM; FUSARIUM WILT; GENE AMPLIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE CONTROL; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TAIWAN; BACTERIA; CITRULLUS; CLASSIFICATION; FUSARIUM; GENETIC MARKER; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MOLECULAR DIAGNOSIS; PLANT DISEASE; PLANT GROWTH; PROCEDURES; RANDOM AMPLIFIED POLYMORPHIC DNA; SPECIES DIFFERENCE;

CITRULLUS LANATUS VAR. LANATUS; FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM OXYSPORUM F. SP. NIVEUM; FUSARIUM SP.;

BACTERIA; CITRULLUS; DNA PRIMERS; FUSARIUM; GENETIC MARKERS; HYPOCOTYL; MOLECULAR DIAGNOSTIC TECHNIQUES; MYCOLOGICAL TYPING TECHNIQUES; PLANT DISEASES; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SPECIES SPECIFICITY; TAIWAN;

EID: 77955094262     PISSN: 18716784     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.nbt.2010.05.005     Document Type: Article

References (35)

1. Snyder W.C., Hanson H.N. The species concept in Fusarium. Am. J. Bot. 1940, 27:64-67.
2. Smith S.N. An overview of ecological and habitat aspects in the genus Fusarium with special emphasis on the soil-borne pathogenic forms. Plant Pathol. Bull. 2007, 16:97-120.
3. Beckman C.H., Roberts E.M. On the nature and genetic basis for resistance and tolerance to fungal wilt diseases of plants. Adv. Bot. Res. 1995, 21:35-77.
4. Notz R., et al. Fusaric acid-producing strains of Fusarium oxysporum alter 2,4-diacetylphloroglucinol biosynthetic gene expression in Pseudomonas fluorescens CHA0 in vitro and in the rhizosphere of wheat. Appl. Environ. Microbiol. 2002, 68:2229-2235.
5. Zhang Z., et al. Molecular detection of Fusarium oxysporum f. sp. niveum and Mycosphaerella melonis in infected plant tissues and soil. FEMS Microbiol. Lett. 2005, 249:39-47.
6. FAO FAO Yearbook (Production) 2008, Food and Agriculture Organization of the United Nations.
7. COA. (2008) COA Yearbook. Council of Agriculture, Executive Yuan, Annual Report of Agricultural Statistics, Taipei, Taiwan.
8. Chang P.F.L., et al. Histopathology comparison and phenylalanine ammonia lyase (PAL) gene expressions in Fusarium wilt infected watermelons. Aust. J. Agric. Res. 2008, 59:1146-1155.
9. Chen K.S., et al. Identification of physiological races of Fusarium oxysporum f. sp. niveum and breeding for Fusarium wilt-resistant watermelon line. Plant Pathol. Bull. 2003, 12:247-254.
10. Chen K.S., et al. Selection for resistance of watermelon varieties (lines) to Fusarium wilt and their genetic analysis of inheritance. Plant Pathol. Bull. 2003, 12:173-180.
11. Martyn R.D., Netzer D. Resistance to races 0, 1, and 2 of Fusarium wilt of watermelon in Citrullus sp. PI-296341-FR. HortScience 1991, 26:429-452.
12. Zhou X.G., et al. Race 3, a new and highly virulent race of Fusarium oxysporum f. sp. niveum causing Fusarium wilt in watermelon. Plant Dis. 2010, 94:92-98.
13. Lin Y.H., et al. Development of a molecular marker for specific detection of Fusarium oxysporum f. sp. cubense race 4. Eur. J. Plant Pathol. 2009, 123:353-365.
14. Shi J., et al. Ultrastructural responses of vessel contact cells in cotton plants resistant or susceptible to infection by Fusarium oxysporum f. sp. vasinfectum. Physiol. Mol. Plant Pathol. 1991, 38:211-222.
15. Diener A.C., Ausubel F.M. RESISTANCE TO FUSARIUM OXYSPORUM 1, a dominant Arabidopsis disease-resistance gene, is not race specific. Genetics 2005, 171:305-321.
16. Daniells J., et al. Goldfinger: not as resistant to sigatoka/yellow sigatoka as first thought. Infomusa 1995, 4:6.
17. Jurado M., et al. PCR-based strategy to detect contamination with mycotoxigenic Fusarium species in maize. Syst. Appl. Microbiol. 2006, 29:681-689.
18. Yergeau E., et al. A PCR-denaturing gradient gel electrophoresis approach to assess Fusarium diversity in asparagus. J. Microbiol. Methods 2005, 60:143-154.
19. Fungaro M.H.P., et al. A molecular method for detection of Aspergillus carbonarius in coffee beans. Curr. Microbiol. 2004, 49:123-127.
20. Koike M., et al. Molecular analysis of Japanese isolates of Verticillium dahliae and V. albo-atrum. Lett. Appl. Microbiol. 1995, 21:75-78.
21. Mes J.J., et al. Biological and molecular characterization of Fusarium oxysporum f. sp. lycopersici divides race 1 isolates into separate virulence groups. Phytopathology 1999, 89:156-160.
22. Nash S.M., Snyder W.C. Quantitative estimations by plate counts of propagules of the bean root rot Fusarium in field soils. Phytopathology 1962, 52:567-572.
23. Duggal A., et al. Ribosomal variation in six species of Fusarium. Mycopathologia 1997, 140:35-49.
24. Zhou X.G., Everts K.L. Suppression of Fusarium wilt of watermelon by soil amendment with hairy vetch. Plant Dis. 2004, 88:1357-1365.
25. Klemsdal S.S., Elen O. Development of a highly sensitive nested-PCR method using a single closed tube for detection of Fusarium culmorum in cereal samples. Lett. Appl. Microbiol. 2006, 42:544-548.
26. Nicholson P., et al. Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiol. Mol. Plant Pathol. 1998, 53:17-37.
27. Parry D.W., Nicholson P. Development of a PCR assay to detect Fusarium poae in wheat. Plant Pathol. 1996, 45:383-391.
28. Schilling A.G., et al. Polymerase chain reaction-based assays for species-specific detection of Fusarium culmorum, F. graminearum, and F. avenaceum. Phytopathology 1996, 86:515-522.
29. Turner A.S., et al. Refinement of PCR-detection of Fusarium avenaceum and evidence from DNA marker studies for phenetic relatedness to Fusarium tricinctum. Plant Pathol. 1998, 47:278-288.
30. Wilson A., et al. Development of PCR assays for the detection and differentiation of Fusarium sporotrichioides and Fusarium langsethiae. FEMS Microbiol. Lett. 2004, 233:69-76.
31. Yoder W.T., Christianson L.M. Species-specific primers resolve members of Fusarium section Fusarium: taxonomic status of the edible "Quorn" fungus reevaluated. Fungal Genet. Biol. 1998, 23:68-80.
32. Armstrong G.M., Armstrong J.K. Formae speciales and races of Fusarium oxysporum causing wilts of the Cucurbitaceae. Phytopathology 1978, 68:19-28.
33. Biles C.L., Martyn R.D. Local and systemic resistance induced in watermelons by formae speciales of Fusarium oxysporum. Phytopathology 1989, 79:856-860.
34. Netzer D., Weintall C.H. Inheritance of resistance in watermelon to race 1 of Fusarium oxysporum f. sp. niveum. Plant Dis. 1980, 64:853-854.
35. Martyn R.D. Fusarium oxysporum f. sp. niveum race 2: a highly aggressive race new to the United States. Plant Dis. 1987, 71:233-236.