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Volumn 4, Issue 1, 2010, Pages 65-83

Tag SNP selection based on clustering according to dominant sets found using replicator dynamics

Author keywords

Clustering; Dominant set; Replicator dynamics; Tag SNP selection

Indexed keywords

COMPUTER SIMULATION; GRAPH THEORY; INDUSTRIAL PLANTS;

EID: 77955085372     PISSN: 18625347     EISSN: 18625355     Source Type: Journal    
DOI: 10.1007/s11634-010-0059-2     Document Type: Article
Times cited : (17)

References (32)
  • 1
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies Nat
    • Balding DJ (2006) A tutorial on statistical methods for population association studies Nat. Rev Gen 7: 781-791.
    • (2006) Rev Gen , vol.7 , pp. 781-791
    • Balding, D.J.1
  • 2
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 4
    • 30344453104 scopus 로고    scopus 로고
    • Haplotypes and haplotype-tagging single-nucleotide polymorphism: Presentation Group 8 of Genetic Analysis Workshop 14
    • Beckmann L, Ziegler A, Duggal P, Bailey-Wilson JE (2005) Haplotypes and haplotype-tagging single-nucleotide polymorphism: presentation Group 8 of Genetic Analysis Workshop 14. Genet Epidemiol 29: 59-71.
    • (2005) Genet Epidemiol , vol.29 , pp. 59-71
    • Beckmann, L.1    Ziegler, A.2    Duggal, P.3    Bailey-Wilson, J.E.4
  • 5
    • 54949119817 scopus 로고    scopus 로고
    • Extending the modified Bayesian information criterion (mBIC) to dense markers and multiple interval mapping
    • Bogdan M, Frommlet F, Biecek P, Cheng R, Ghosh JK, Doerge RW (2008) Extending the modified Bayesian information criterion (mBIC) to dense markers and multiple interval mapping. Biometrics 64: 1162-1169.
    • (2008) Biometrics , vol.64 , pp. 1162-1169
    • Bogdan, M.1    Frommlet, F.2    Biecek, P.3    Cheng, R.4    Ghosh, J.K.5    Doerge, R.W.6
  • 6
    • 0000095120 scopus 로고    scopus 로고
    • Evolution towards the maximum clique
    • Bomze IM (1997) Evolution towards the maximum clique. JOGO 10: 143-164.
    • (1997) Jogo , vol.10 , pp. 143-164
    • Bomze, I.M.1
  • 7
    • 26444611520 scopus 로고    scopus 로고
    • Portfolio selection via replicator dynamics and projections of indefinite estimated covariances
    • Bomze IM (2005) Portfolio selection via replicator dynamics and projections of indefinite estimated covariances. Dyn Contin Dis Impul Syst B 12: 527-564.
    • (2005) Dyn Contin Dis Impul Syst B , vol.12 , pp. 527-564
    • Bomze, I.M.1
  • 8
    • 85012820068 scopus 로고    scopus 로고
    • Buló SR (2008) Private communication.
  • 9
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 74: 106-120.
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 10
    • 0029150074 scopus 로고
    • A comparison of linkage disequilibrium measures for fine-scale mapping
    • Devlin B, Risch N (1995) A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 29: 311-322.
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 11
    • 19944420428 scopus 로고    scopus 로고
    • Optimal selection of SNP markers for disease association studies
    • Halldorsson BV, Istrail S, Vega F (2004) Optimal selection of SNP markers for disease association studies. Hum Hered 58: 190-202.
    • (2004) Hum Hered , vol.58 , pp. 190-202
    • Halldorsson, B.V.1    Istrail, S.2    Vega, F.3
  • 12
    • 84860539286 scopus 로고    scopus 로고
    • Tag SNP selection in genotype data for maximizing SNP prediction accuracy
    • Halperin E, Kimmel G, Shamir R (2005) Tag SNP selection in genotype data for maximizing SNP prediction accuracy. Bioinformatics 21: 195-203.
    • (2005) Bioinformatics , vol.21 , pp. 195-203
    • Halperin, E.1    Kimmel, G.2    Shamir, R.3
  • 13
    • 33749818757 scopus 로고    scopus 로고
    • MLR-Tagging: Informative SNP selection for unphased genotypes based on multiple linear regression
    • He J, Zelikovsky A (2006) MLR-Tagging: informative SNP selection for unphased genotypes based on multiple linear regression. Bioinformatics 22: 2558-2561.
    • (2006) Bioinformatics , vol.22 , pp. 2558-2561
    • He, J.1    Zelikovsky, A.2
  • 14
    • 6344233909 scopus 로고    scopus 로고
    • Finding haplotype tagging SNPs by use of principal components analysis
    • Lin Z, Altman B (2004) Finding haplotype tagging SNPs by use of principal components analysis. Am J Hum Genet 75: 850-861.
    • (2004) Am J Hum Genet , vol.75 , pp. 850-861
    • Lin, Z.1    Altman, B.2
  • 15
    • 0036557909 scopus 로고    scopus 로고
    • Using replicator dynamics for analyzing fMRI data of the human brain
    • Lohmann G, Bohn S (2004) Using replicator dynamics for analyzing fMRI data of the human brain. IEEE Trans Med Imag 21: 485-492.
    • (2004) IEEE Trans Med Imag , vol.21 , pp. 485-492
    • Lohmann, G.1    Bohn, S.2
  • 16
    • 0000230999 scopus 로고
    • Maxima for graphs and a new proof of a theorem of Turan
    • Motzkin TS, Straus EG (1965) Maxima for graphs and a new proof of a theorem of Turan. Can J Math 17: 533-540.
    • (1965) Can J Math , vol.17 , pp. 533-540
    • Motzkin, T.S.1    Straus, E.G.2
  • 17
    • 30344462556 scopus 로고    scopus 로고
    • Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms
    • Nicodemus KK, Liu W, Chase GA, Tsai YY, Fallin MD (2005) Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms. BMC Genet 6(Suppl 1): S78.
    • (2005) BMC Genet , vol.6 , Issue.SUPPL. 1
    • Nicodemus, K.K.1    Liu, W.2    Chase, G.A.3    Tsai, Y.Y.4    Fallin, M.D.5
  • 18
    • 33746608900 scopus 로고    scopus 로고
    • A model-based approach to selection of tag SNPs
    • Nicolas P, Sun F, Li LM (2006) A model-based approach to selection of tag SNPs. BMC Bioinform 7: 303.
    • (2006) BMC Bioinform , vol.7 , pp. 303
    • Nicolas, P.1    Sun, F.2    Li, L.M.3
  • 19
    • 0041939837 scopus 로고    scopus 로고
    • A new graph-theoretic approach to clustering and segmentation
    • Pavan M, Pelillo M (2003) A new graph-theoretic approach to clustering and segmentation. IEEE Conf Comput Vis Pattern Recogn 1: 145-152.
    • (2003) IEEE Conf Comput Vis Pattern Recogn , vol.1 , pp. 145-152
    • Pavan, M.1    Pelillo, M.2
  • 21
    • 33646399997 scopus 로고    scopus 로고
    • Payoff-monotonic game dynamics and the maximum clique problem
    • Pelillo M, Torsello A (2006) Payoff-monotonic game dynamics and the maximum clique problem. Neur Comp 18: 1215-1258.
    • (2006) Neur Comp , vol.18 , pp. 1215-1258
    • Pelillo, M.1    Torsello, A.2
  • 22
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard JK, Przeworski M (2001) Linkage disequilibrium in humans: models and data. Am J Hum Genet 69: 1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 23
    • 32144431911 scopus 로고    scopus 로고
    • An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria
    • Qin ZS, Gopalakrishnan S, Abecasis GR (2006) An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics 22: 220-225.
    • (2006) Bioinformatics , vol.22 , pp. 220-225
    • Qin, Z.S.1    Gopalakrishnan, S.2    Abecasis, G.R.3
  • 24
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet P, Stephens M (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 78: 629-644.
    • (2006) Am J Hum Genet , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 25
    • 10044235010 scopus 로고    scopus 로고
    • Tag SNP selection for association studies
    • Stram DO (2004) Tag SNP selection for association studies. Gen Epi 27: 365-374.
    • (2004) Gen Epi , vol.27 , pp. 365-374
    • Stram, D.O.1
  • 26
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • The Encode Project Consortium
    • The Encode Project Consortium: (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
    • (2004) Science , vol.306 , pp. 636-640
  • 27
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium: (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 28
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • The International HapMap Consortium
    • The International HapMap Consortium: (2007) A second generation human haplotype map of over 3. 1 million SNPs. Nature 449: 851-862.
    • (2007) Nature , vol.449 , pp. 851-862
  • 29
    • 57449115418 scopus 로고    scopus 로고
    • A genotype-based approach to assessing the association between single nucleotide polymorphisms
    • Wellek S, Ziegler A (2009) A genotype-based approach to assessing the association between single nucleotide polymorphisms. Hum Hered 67: 128-139.
    • (2009) Hum Hered , vol.67 , pp. 128-139
    • Wellek, S.1    Ziegler, A.2
  • 30
    • 36549060085 scopus 로고    scopus 로고
    • TAGster: Efficient selection of LD tag SNPs in single or multiple populations
    • Xu Z, Kaplan NL, Taylor JA (2007) TAGster: efficient selection of LD tag SNPs in single or multiple populations. Bioinformatics 23: 3254-3255.
    • (2007) Bioinformatics , vol.23 , pp. 3254-3255
    • Xu, Z.1    Kaplan, N.L.2    Taylor, J.A.3
  • 31
    • 0037188541 scopus 로고    scopus 로고
    • A dynamic programming algorithm for haplotype block partitioning
    • Zhang K, Deng M, Chen T, Waterman MS, Sun F (2002) A dynamic programming algorithm for haplotype block partitioning. Natl Acad Sci USA 99: 7335-7339.
    • (2002) Natl Acad Sci USA , vol.99 , pp. 7335-7339
    • Zhang, K.1    Deng, M.2    Chen, T.3    Waterman, M.S.4    Sun, F.5
  • 32
    • 27744539214 scopus 로고    scopus 로고
    • Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples
    • Zhang K, Sun F (2005) Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples. BMC Genet 6: 51.
    • (2005) BMC Genet , vol.6 , pp. 51
    • Zhang, K.1    Sun, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.