-
2
-
-
33748682730
-
Remote homology detection based on oligomer distances
-
10.1093/bioinformatics/btl376, 16837522
-
Lingner T, Meinicke P. Remote homology detection based on oligomer distances. Bioinformatics 2006, 22(18):2224-2231. 10.1093/bioinformatics/btl376, 16837522.
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2224-2231
-
-
Lingner, T.1
Meinicke, P.2
-
3
-
-
3242889314
-
Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance
-
10.1142/S0219720004000442, 15272430
-
Hao B, Qi J. Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance. J Bioinform Comput Biol 2004, 2:1-19. 10.1142/S0219720004000442, 15272430.
-
(2004)
J Bioinform Comput Biol
, vol.2
, pp. 1-19
-
-
Hao, B.1
Qi, J.2
-
4
-
-
47249127227
-
An improved string composition method for sequence comparison
-
10.1186/1471-2105-9-S6-S15, 2423438, 18541050
-
Lu G, Zhang S, Fang X. An improved string composition method for sequence comparison. BMC Bioinformatics 2008, 9(Suppl 6):S15. 10.1186/1471-2105-9-S6-S15, 2423438, 18541050.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL 6
-
-
Lu, G.1
Zhang, S.2
Fang, X.3
-
5
-
-
0033153375
-
Alignment of whole genomes
-
10.1093/nar/27.11.2369, 148804, 10325427
-
Delcher AL, Kasif S, Fleischmann RD, Peterson J, White O, Salzberg SL. Alignment of whole genomes. Nucl Acids Res 1999, 27:2369-2376. 10.1093/nar/27.11.2369, 148804, 10325427.
-
(1999)
Nucl Acids Res
, vol.27
, pp. 2369-2376
-
-
Delcher, A.L.1
Kasif, S.2
Fleischmann, R.D.3
Peterson, J.4
White, O.5
Salzberg, S.L.6
-
7
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
10.1186/gb-2004-5-2-r12, 395750, 14759262
-
Kurtz S, Phillippy A, Delcher AL, Shumway M, Antonescu C, Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol 2004, 5:R12. 10.1186/gb-2004-5-2-r12, 395750, 14759262.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Shumway, M.4
Antonescu, C.5
Salzberg, S.L.6
-
8
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequences with rearrangements
-
10.1101/gr.2289704, 442156, 15231754
-
Darling A, Mau B, Blatter FR, Perna NT. Mauve: multiple alignment of conserved genomic sequences with rearrangements. Genome Res 2004, 14:1394-1403. 10.1101/gr.2289704, 442156, 15231754.
-
(2004)
Genome Res
, vol.14
, pp. 1394-1403
-
-
Darling, A.1
Mau, B.2
Blatter, F.R.3
Perna, N.T.4
-
9
-
-
0002181529
-
Caractérisation des N-écritures et application á l'étude des suites de complexité ultimement n+cste
-
Didier G. Caractérisation des N-écritures et application á l'étude des suites de complexité ultimement n+cste. Theor Comput Sc 1999, 215:31-49.
-
(1999)
Theor Comput Sc
, vol.215
, pp. 31-49
-
-
Didier, G.1
-
10
-
-
33846639673
-
Comparing sequences without using alignments: application to HIV/SIV subtyping
-
10.1186/1471-2105-8-1, 1766362, 17199892
-
Didier G, Debomy L, Pupin M, Zhang M, Grossmann A, Devauchelle C, Laprevotte I. Comparing sequences without using alignments: application to HIV/SIV subtyping. BMC Bioinformatics 2007, 8:1. 10.1186/1471-2105-8-1, 1766362, 17199892.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 1
-
-
Didier, G.1
Debomy, L.2
Pupin, M.3
Zhang, M.4
Grossmann, A.5
Devauchelle, C.6
Laprevotte, I.7
-
11
-
-
30744470609
-
Application of phylogenetics networks in evolutionary studies
-
10.1093/molbev/msj030, 16221896
-
Huson DH, Bryant D. Application of phylogenetics networks in evolutionary studies. Mol Biol Evol 2006, 23:254-267. 10.1093/molbev/msj030, 16221896.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
12
-
-
1542347067
-
NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks
-
10.1093/molbev/msh018, 14660700
-
Bryant D, Moulton V. NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks. Mol Biol Evol 2004, 21:255-265. 10.1093/molbev/msh018, 14660700.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
13
-
-
33846621879
-
Local decoding of sequences and alignment-free comparison
-
10.1089/cmb.2006.13.1465, 17061922
-
Didier G, Laprevotte I, Pupin M, Hénaut A. Local decoding of sequences and alignment-free comparison. J Comput Biol 2006, 13:1465-1476. 10.1089/cmb.2006.13.1465, 17061922.
-
(2006)
J Comput Biol
, vol.13
, pp. 1465-1476
-
-
Didier, G.1
Laprevotte, I.2
Pupin, M.3
Hénaut, A.4
-
15
-
-
84888281362
-
HIV and SIV Nomenclature
-
HIV and SIV Nomenclature. , http://www.hiv.lanl.gov/content/sequence/HelpDocs/subtypes-more.html
-
-
-
-
16
-
-
84874652982
-
Los Alamos HIV sequence database
-
Los Alamos HIV sequence database. , http://hiv-web.lanl.gov/
-
-
-
-
17
-
-
84874646901
-
HIV-1/HIV-2/SIV Complete Genomes
-
HIV-1/HIV-2/SIV Complete Genomes. , http://www.hiv.lanl.gov/content/sequence/HIV/COMPENDIUM/2000/HIV12SIVcomplete.pdf
-
-
-
-
18
-
-
0034932023
-
HIV-1 and HIV-2 nucleotide sequences: assessment of the alignment by N-block presentation, "retroviral signatures" of overrepeated oligonucleotides, and probable important role of scrambled stepwise duplications/deletions in molecular evolution
-
Laprevotte I, Pupin M, Coward E, Didier G, Terzian C, Devauchelle C, Hénaut A. HIV-1 and HIV-2 nucleotide sequences: assessment of the alignment by N-block presentation, "retroviral signatures" of overrepeated oligonucleotides, and probable important role of scrambled stepwise duplications/deletions in molecular evolution. Mol Biol Evol 2001, 18:1231-1245.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1231-1245
-
-
Laprevotte, I.1
Pupin, M.2
Coward, E.3
Didier, G.4
Terzian, C.5
Devauchelle, C.6
Hénaut, A.7
-
19
-
-
34248363117
-
Multiple sequence alignment with user-defined anchor points
-
10.1186/1748-7188-1-6, 1481597, 16722533
-
Morgenstern B, Prohaska S, Pöhler D, Stadler PF. Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology 2006, 1(1):6. 10.1186/1748-7188-1-6, 1481597, 16722533.
-
(2006)
Algorithms for Molecular Biology
, vol.1
, Issue.1
, pp. 6
-
-
Morgenstern, B.1
Prohaska, S.2
Pöhler, D.3
Stadler, P.F.4
-
20
-
-
65449188232
-
Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
-
10.1093/bioinformatics/btp033, 2672624, 19151095
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25:1189-1191. 10.1093/bioinformatics/btp033, 2672624, 19151095.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
22
-
-
84888284545
-
Jalview Download Page
-
Jalview Download Page. , http://www.jalview.org/download.html
-
-
-
|