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Volumn 26, Issue 15, 2010, Pages 1918-1919

LOX: Inferring level of expression from diverse methods of census sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER PROGRAM; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; METHODOLOGY;

EID: 77955016107     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq303     Document Type: Article
Times cited : (28)

References (16)
  • 1
    • 68849123047 scopus 로고    scopus 로고
    • Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
    • Balwierz,P.J. et al. (2009) Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data. Genome Biol., 10, R79.
    • (2009) Genome Biol. , vol.10
    • Balwierz, P.J.1
  • 2
    • 66349083834 scopus 로고    scopus 로고
    • Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
    • Bloom,J.S. et al. (2009) Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics, 10, 221.
    • (2009) BMC Genomics , vol.10 , pp. 221
    • Bloom, J.S.1
  • 3
    • 69249147045 scopus 로고    scopus 로고
    • Expression profiling of microRNAs by deep sequencing
    • Creighton,C.J. et al. (2009) Expression profiling of microRNAs by deep sequencing. Brief Bioinform., 10, 490-497.
    • (2009) Brief Bioinform. , vol.10 , pp. 490-497
    • Creighton, C.J.1
  • 4
    • 0000954353 scopus 로고    scopus 로고
    • Efficient Metropolis jumping rules
    • Bernardo,J.M. et al. (eds), Oxford University Press Oxford
    • Gelman,A. et al. (1996) Efficient Metropolis jumping rules. In Bernardo,J.M. et al. (eds), Bayesian Statistics 5. Oxford University Press, Oxford, pp. 599-607.
    • (1996) Bayesian Statistics , vol.5 , pp. 599-607
    • Gelman, A.1
  • 5
    • 36348929994 scopus 로고    scopus 로고
    • Counterselection of prokaryotic ribosomal RNA during reverse transcription using non-random hexameric oligonucleotides
    • Gonzalez,J.M. and Robb,F.T. (2007) Counterselection of prokaryotic ribosomal RNA during reverse transcription using non-random hexameric oligonucleotides. J. Microbiol. Methods, 71, 288-291.
    • (2007) J. Microbiol. Methods , vol.71 , pp. 288-291
    • Gonzalez, J.M.1    Robb, F.T.2
  • 6
    • 0030845410 scopus 로고    scopus 로고
    • Rational primer design greatly improves differential display-PCR (DD-PCR)
    • Graf,D. et al. (1997) Rational primer design greatly improves differential display-PCR (DD-PCR). Nucleic Acids Res., 25, 2239-2240.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2239-2240
    • Graf, D.1
  • 7
    • 77956890234 scopus 로고
    • Monte-Carlo sampling methods using Markov chains and their applications
    • Hastings,W.K. (1970) Monte-Carlo sampling methods using Markov chains and their applications. Biometrika, 57, 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 8
    • 5744249209 scopus 로고
    • Equation of state calculations by fast computing machines
    • Metropolis,N. et al. (1953) Equation of state calculations by fast computing machines. J. Chem. Phys., 21, 1087-1092.
    • (1953) J. Chem. Phys. , vol.21 , pp. 1087-1092
    • Metropolis, N.1
  • 9
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • Robinson,M.D. et al. (2010) edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1
  • 10
    • 1542328972 scopus 로고    scopus 로고
    • Properties of the reverse transcription reaction in mRNA quantification
    • Stahlberg,A. et al. (2004) Properties of the reverse transcription reaction in mRNA quantification. Clin. Chem., 50, 509-515.
    • (2004) Clin. Chem. , vol.50 , pp. 509-515
    • Stahlberg, A.1
  • 11
    • 33745482592 scopus 로고    scopus 로고
    • Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA
    • Stangegaard,M. et al. (2006) Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA. Biotechniques, 40, 649-657.
    • (2006) Biotechniques , vol.40 , pp. 649-657
    • Stangegaard, M.1
  • 12
    • 57149085481 scopus 로고    scopus 로고
    • Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
    • t Hoen,P.A. et al. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res., 36, e141.
    • (2008) Nucleic Acids Res. , vol.36
    • t Hoen, P.A.1
  • 13
    • 0034044318 scopus 로고    scopus 로고
    • Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis
    • Talaat,A.M. et al. (2000) Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis. Nat. Biotechnol., 18, 679-682.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 679-682
    • Talaat, A.M.1
  • 14
    • 0037975700 scopus 로고    scopus 로고
    • Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments
    • RESEARCH0071
    • Townsend,J.P. and Hartl,D.L. (2002) Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biol., 3, RESEARCH0071.
    • (2002) Genome Biol. , vol.3
    • Townsend, J.P.1    Hartl, D.L.2
  • 15
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • Wang,L. et al. (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics, 26, 136-138.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1
  • 16
    • 0036319960 scopus 로고    scopus 로고
    • Design issues for cDNA microarray experiments
    • Yang,Y.H. and Speed,T. (2002) Design issues for cDNA microarray experiments. Nat. Rev. Genet., 3, 579-588.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 579-588
    • Yang, Y.H.1    Speed, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.