-
1
-
-
0026672305
-
NMR determination of residual structure in a urea-denatured protein, the 434-repressor
-
Neri D., Billeter M., Wider G., et al. NMR determination of residual structure in a urea-denatured protein, the 434-repressor. Science 1992, 257:1559-1563.
-
(1992)
Science
, vol.257
, pp. 1559-1563
-
-
Neri, D.1
Billeter, M.2
Wider, G.3
-
2
-
-
0027955640
-
NMR assignments as a basis for structural characterization of denatured states of globular proteins
-
Wuthrich K. NMR assignments as a basis for structural characterization of denatured states of globular proteins. Curr. Opin. Struct. Biol. 1994, 4:93-99.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 93-99
-
-
Wuthrich, K.1
-
3
-
-
0029961647
-
Structural analysis of non-native states of proteins by NMR methods
-
Shortle D.R. Structural analysis of non-native states of proteins by NMR methods. Curr. Opin. Struct. Biol. 1996, 6:24-30.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 24-30
-
-
Shortle, D.R.1
-
4
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8M urea
-
Shortle D., Ackerman M.S. Persistence of native-like topology in a denatured protein in 8M urea. Science 2001, 293:487-489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.S.2
-
5
-
-
18244364614
-
Long-range interactions within a nonnative protein
-
Klein-Seetharaman J., Oikawa M., Grimshaw S.B., et al. Long-range interactions within a nonnative protein. Science 2002, 295:1719-1722.
-
(2002)
Science
, vol.295
, pp. 1719-1722
-
-
Klein-Seetharaman, J.1
Oikawa, M.2
Grimshaw, S.B.3
-
6
-
-
0036394906
-
Native-like mean structure in the unfolded ensemble of small proteins
-
Zagrovic B., Snow C.D., Khaliq S., et al. Native-like mean structure in the unfolded ensemble of small proteins. J. Mol. Biol. 2002, 323:153-164.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 153-164
-
-
Zagrovic, B.1
Snow, C.D.2
Khaliq, S.3
-
8
-
-
2342432162
-
The effect of disease-associated mutations on the folding pathway of human prion protein
-
Apetri A.C., Surewicz K., Surewicz W.K. The effect of disease-associated mutations on the folding pathway of human prion protein. J. Biol. Chem. 2004, 279:18008-18014.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 18008-18014
-
-
Apetri, A.C.1
Surewicz, K.2
Surewicz, W.K.3
-
9
-
-
0036384131
-
A partially buried site in homologous HPr proteins is not optimized for stability
-
Nicholson E.M., Peterson R.W., Scholtz J.M. A partially buried site in homologous HPr proteins is not optimized for stability. J. Mol. Biol. 2002, 321:355-362.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 355-362
-
-
Nicholson, E.M.1
Peterson, R.W.2
Scholtz, J.M.3
-
10
-
-
0037108168
-
Locally disordered conformer of the hamster prion protein: a crucial intermediate to PrPSc?
-
Kuwata K., Li H., Yamada H., et al. Locally disordered conformer of the hamster prion protein: a crucial intermediate to PrPSc?. Biochemistry 2002, 41:12277-12283.
-
(2002)
Biochemistry
, vol.41
, pp. 12277-12283
-
-
Kuwata, K.1
Li, H.2
Yamada, H.3
-
11
-
-
57749098600
-
Amyloid formation by globular proteins under native conditions
-
Chiti F., Dobson C.M. Amyloid formation by globular proteins under native conditions. Nat. Chem. Biol. 2009, 5:15-22.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 15-22
-
-
Chiti, F.1
Dobson, C.M.2
-
12
-
-
62449226332
-
A role for helical intermediates in amyloid formation by natively unfolded polypeptides?
-
Abedini A., Raleigh D.P. A role for helical intermediates in amyloid formation by natively unfolded polypeptides?. Phys. Biol. 2009, 6:15005.
-
(2009)
Phys. Biol.
, vol.6
, pp. 15005
-
-
Abedini, A.1
Raleigh, D.P.2
-
13
-
-
0242509772
-
Self-guided Langevin dynamics simulation method
-
Wu X.W., Brooks B.R. Self-guided Langevin dynamics simulation method. Chem. Phys. Lett. 2003, 381:512-518.
-
(2003)
Chem. Phys. Lett.
, vol.381
, pp. 512-518
-
-
Wu, X.W.1
Brooks, B.R.2
-
14
-
-
1942455284
-
Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces
-
Wen E.Z., Hsieh M.J., Kollman P.A., et al. Enhanced ab initio protein folding simulations in Poisson-Boltzmann molecular dynamics with self-guiding forces. J. Mol. Graph. Model. 2004, 22:415-424.
-
(2004)
J. Mol. Graph. Model.
, vol.22
, pp. 415-424
-
-
Wen, E.Z.1
Hsieh, M.J.2
Kollman, P.A.3
-
15
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Duan Y., Wu C., Chowdhury S., et al. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 2003, 24:1999-2012.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
-
16
-
-
1842479952
-
Exploring protein native states and large-scale conformational changes with a modified generalized born model
-
Onufriev A., Bashford D., Case D.A. Exploring protein native states and large-scale conformational changes with a modified generalized born model. Proteins 2004, 55:383-394.
-
(2004)
Proteins
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
17
-
-
47249119770
-
Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations
-
Lei H., Wu C., Wang Z.X., et al. Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations. J. Chem. Phys. 2008, 128:235105.
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 235105
-
-
Lei, H.1
Wu, C.2
Wang, Z.X.3
-
18
-
-
34247186195
-
-
University of California, San Francisco, CA
-
Case D.A., Darden T.A., Cheatham I.T.E., et al. AMBER 9 2006, University of California, San Francisco, CA.
-
(2006)
AMBER 9
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, I.T.E.3
-
19
-
-
0041315527
-
Influence of pH on NMR structure and stability of the human prion protein globular domain
-
Calzolai L., Zahn R. Influence of pH on NMR structure and stability of the human prion protein globular domain. J. Biol. Chem. 2003, 278:35592-35596.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35592-35596
-
-
Calzolai, L.1
Zahn, R.2
-
20
-
-
0032607091
-
Enhancing systematic motion in molecular dynamics simulation
-
Wu X.W., Wang S.M. Enhancing systematic motion in molecular dynamics simulation. J. Chem. Phys. 1999, 110:9401-9410.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 9401-9410
-
-
Wu, X.W.1
Wang, S.M.2
-
21
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983, 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
22
-
-
36649006642
-
Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms
-
Shao J.Y., Tanner S.W., Thompson N., et al. Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms. J. Chem. Theory Comput. 2007, 3:2312-2334.
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 2312-2334
-
-
Shao, J.Y.1
Tanner, S.W.2
Thompson, N.3
-
23
-
-
58049201323
-
-
University of California, San Francisco, CA
-
Case D.A., Darden T.A., Cheatham I.T.E., et al. AMBER 10 2008, University of California, San Francisco, CA.
-
(2008)
AMBER 10
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, I.T.E.3
-
24
-
-
0012710491
-
NMR solution structure of the human prion protein
-
Zahn R., Liu A., Luhrs T., et al. NMR solution structure of the human prion protein. Proc. Natl Acad. Sci. USA 2000, 97:145-150.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 145-150
-
-
Zahn, R.1
Liu, A.2
Luhrs, T.3
-
25
-
-
0037077234
-
Pathway complexity of prion protein assembly into amyloid
-
Baskakov I.V., Legname G., Baldwin M.A., et al. Pathway complexity of prion protein assembly into amyloid. J. Biol. Chem. 2002, 277:21140-21148.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 21140-21148
-
-
Baskakov, I.V.1
Legname, G.2
Baldwin, M.A.3
-
26
-
-
0023676109
-
Purification and properties of the cellular and scrapie hamster prion proteins
-
Turk E., Teplow D.B., Hood L.E., et al. Purification and properties of the cellular and scrapie hamster prion proteins. Eur. J. Biochem. 1988, 176:21-30.
-
(1988)
Eur. J. Biochem.
, vol.176
, pp. 21-30
-
-
Turk, E.1
Teplow, D.B.2
Hood, L.E.3
-
27
-
-
0037031950
-
Intramolecular versus intermolecular disulfide bonds in prion proteins
-
Welker E., Raymond L.D., Scheraga H.A., et al. Intramolecular versus intermolecular disulfide bonds in prion proteins. J. Biol. Chem. 2002, 277:33477-33481.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 33477-33481
-
-
Welker, E.1
Raymond, L.D.2
Scheraga, H.A.3
-
28
-
-
34548221936
-
Structural and hydration properties of the partially unfolded states of the prion protein
-
De Simone A., Zagari A., Derreumaux P. Structural and hydration properties of the partially unfolded states of the prion protein. Biophys. J. 2007, 93:1284-1292.
-
(2007)
Biophys. J.
, vol.93
, pp. 1284-1292
-
-
De Simone, A.1
Zagari, A.2
Derreumaux, P.3
-
29
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
0346749511
-
CD and NMR studies of prion protein (PrP) helix 1. Novel implications for its role in the PrPC→PrPSc conversion process
-
Ziegler J., Sticht H., Marx U.C., et al. CD and NMR studies of prion protein (PrP) helix 1. Novel implications for its role in the PrPC→PrPSc conversion process. J. Biol. Chem. 2003, 278:50175-50181.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 50175-50181
-
-
Ziegler, J.1
Sticht, H.2
Marx, U.C.3
-
31
-
-
0033613203
-
Evidence for the role of PrP(C) helix 1 in the hydrophilic seeding of prion aggregates
-
Morrissey M.P., Shakhnovich E.I. Evidence for the role of PrP(C) helix 1 in the hydrophilic seeding of prion aggregates. Proc. Natl Acad. Sci. USA 1999, 96:11293-11298.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 11293-11298
-
-
Morrissey, M.P.1
Shakhnovich, E.I.2
-
32
-
-
0030878056
-
Recombinant full-length murine prion protein, mPrP(23-231): purification and spectroscopic characterization
-
Hornemann S., Korth C., Oesch B., et al. Recombinant full-length murine prion protein, mPrP(23-231): purification and spectroscopic characterization. FEBS Lett. 1997, 413:277-281.
-
(1997)
FEBS Lett.
, vol.413
, pp. 277-281
-
-
Hornemann, S.1
Korth, C.2
Oesch, B.3
-
33
-
-
33846811599
-
Beta-sheet core of human prion protein amyloid fibrils as determined by hydrogen/deuterium exchange
-
Lu X., Wintrode P.L., Surewicz W.K. Beta-sheet core of human prion protein amyloid fibrils as determined by hydrogen/deuterium exchange. Proc. Natl Acad. Sci. USA 2007, 104:1510-1515.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 1510-1515
-
-
Lu, X.1
Wintrode, P.L.2
Surewicz, W.K.3
|