Multiplex PCR for detection of clarithromycin resistance and simultaneous species identification of Mycobacterium avium complex

Southeast Asian Journal of Tropical Medicine and Public Health

Volumn 41, Issue 3, 2010, Pages 590-601

  Iamsawat, Supinya ^a   Surawut, Saowapha ^a   Prammananan, Therdsak ^b   Leelaporn, Amornrut ^a   Jearanaisilavong, Juree ^a  

^a MAHIDOL UNIVERSITY   (Thailand)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

Clarithromycin resistance; M. avium complex; Mycobacterium; PCR

Indexed keywords

CLARITHROMYCIN;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; DRUG EFFECT; HUMAN; METHODOLOGY; MICROBIOLOGICAL EXAMINATION; MYCOBACTERIUM INTRACELLULARE AVIUM; POLYMERASE CHAIN REACTION; PREDICTION AND FORECASTING; SENSITIVITY AND SPECIFICITY;

BACTERIAL TYPING TECHNIQUES; CLARITHROMYCIN; DRUG RESISTANCE, BACTERIAL; HUMANS; MICROBIAL SENSITIVITY TESTS; MYCOBACTERIUM AVIUM COMPLEX; POLYMERASE CHAIN REACTION; PREDICTIVE VALUE OF TESTS; SENSITIVITY AND SPECIFICITY;

EID: 77954752947     PISSN: 01251562     EISSN: 26975718     Source Type: Journal    
DOI: None     Document Type: Article

References (38)

1. Chaisson R. Clarithromycin is effective against M. avium complex in AIDS. Am Fam Physician 1992; 46: 1784.
2. Chaisson RE, Benson CA, Dube MP, et al. Clarithromycin therapy for bacteremic Mycobacterium avium complex disease. A randomized, double-blind, dose-ranging study in patients with AIDS. AIDS Clinical Trials Group Protocol 157 Study Team. Ann Intern Med 1994; 121: 905-11.
3. Cheunoy W, Prammananan T, Chaiprasert A, Foongladda S. Comparative evaluation of polymerase chain reaction and restriction enzyme analysis: two amplified targets, hsp65 and rpoB, for identification of cultured mycobacteria. Diagn Microbiol Infect Dis 2005; 51: 165-71.
4. Clancy J, Petitpas J, Dib-Hajj F, et al. Molecular cloning and functional analysis of a novel macrolide-resistance determinant, mefA, from Streptococcus pyogenes. Mol Microbiol 1996; 22: 867-79.
5. Daly, MM, Doktor S, Flamm R, Shortridge D. Characterization and prevalence of MefA, MefE, and the associated msr(D) gene in Streptococcus pneumoniae clinical isolates. J Clin Microbiol 2004; 42: 3570-4.
6. Devallois A, Goh KS, Rastogi N. Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of algorithm to differentiate 34 mycobacterial species. J Clin Microbiol 1997; 35: 2969-73.
7. Fabry W, Schmid EN, Ansorg R. Comparison of the E test and a proportion dilution method for susceptibility testing of Mycobacterium avium complex. J Med Microbiol 1996; 44: 227-30.
8. Frothingham R, Wilson KH. Sequence-based differentiation of strains in the Mycobacterium avium complex. J Bacteriol 1993; 175: 2818-25.
9. Gardner EM, Burman WJ, DeGroote MA, Hildred G, Pace NR. Conventional and molecular epidemiology of macrolide resistance among new Mycobacterium avium complex isolates recovered from HIV-infected patients. Clin Infect Dis 2005; 41: 1041-4.
10. Goto M, Oka S, Okuzumi K, Kimura S, Shimada K. Evaluation of acridinium-ester-labeled DNA probes for identification of Mycobacterium tuberculosis and Mycobacterium avium-Mycobacterium intracellulare complex in culture. J Clin Microbiol 1991; 29: 2473-6.
11. Guerrero C, Bernasconi C, Burki D, Bodmer T, Telenti A. A novel insertion element from Mycobacterium avium, IS1245, is a specific target for analysis of strain relatedness. J Clin Microbiol 1995; 33: 304-7.
12. Harmsen D, Dostal S, Roth A, et al. RIDOM: comprehensive and public sequence database for identification of Mycobacterium species. BMC Infect Dis 2003; 3: 26.
13. Heifets LB. Clarithromycin against Mycobacterium avium complex infections. Tuber Lung Dis 1996; 77: 19-26.
14. Heifets LB, Lindholm-Levy PJ, Comstock RD. Clarithromycin minimal inhibitory and bactericidal concentrations against Mycobacterium avium. Am Rev Respir Dis 1992; 145: 856-8.
15. Jamal MA, Maeda S, Nakata N, Kai M, Fukuchi K, Kashiwabara Y. Molecular basis of clarithromycin-resistance in Mycobacterium avium-intracellulare complex. Tuber Lung Dis 2000; 80: 1-4.
16. Jarboe E, Stone BL, Burman WJ, et al. Evaluation of a disk diffusion method for determining susceptibility of Mycobacterium avium complex to clarithromycin. Diagn Microbiol Infect Dis 1998; 30: 197-203.
17. Karakousis PC, Moore RD, Chaisson RE. Mycobacterium avium complex in patients with HIV infection in the era of highly active antiretroviral therapy. Lancet Infect Dis 2004; 4: 557-65.
18. Kent PT, Kubica GP. Public health mycobacteriology. A guide for the level III laboratory. Atlanta: US Department of Health and Human Service, 1985.
19. Kiehn TE, Edwards FF. Rapid identification using a specific DNA probe of Mycobacterium avium complex from patients with acquired immunodeficiency syndrome. J Clin Microbiol 1987; 25: 1551-2.
20. Koivula T, Cristea-Fernstrom M, Chryssanthou E, Petrini B, Kallenius G. Genetic diversity in clinical isolates of Mycobacterium avium complex from Guinea-Bissau, West Africa. Microbes Infect 2004; 6: 1320-5.
21. Kulski JK, Khinsoe C, Pryce T, Christiansen K. Use of a multiplex PCR to detect and identify Mycobacterium avium and M. intracellulare in blood culture fluids of AIDS patients. J Clin Microbiol 1995; 33: 668-74.
22. Lebrun L, Weill FX, Lafendi L, et al. Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulareMycobacterium scrofulaceum complex isolates. J Clin Microbiol 2005; 43: 2567-74.
23. Lee H, Park HJ, Cho SN, Bai GH, Kim SJ. Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol 2000; 38: 2966-71.
24. Lim SD, Todd J, Lopez J, Ford E, Janda JM. Genotypic identification of pathogenic Mycobacterium species by using a nonradioactive oligonucleotide probe. J Clin Microbiol 1991; 29: 1276-8.
25. Marimon JM, Valiente A, Ercibengoa M, Garcia-Arenzana JM, Perez-Trallero E. Erythromycin resistance and genetic elements carrying macrolide efflux genes in Streptococcus agalactiae. Antimicrob Agents Chemother 2005; 49: 5069-74.
26. McNabb A, Eisler D, Adie K, et al. Assessment of partial sequencing of the 65-kilodalton heat shock protein gene (hsp65) for routine identification of Mycobacterium species isolated from clinical sources. J Clin Microbiol 2004; 42: 3000-11.
27. Meier A, Heifets L, Wallace RJ Jr, et al. Molecular mechanisms of clarithromycin resistance in Mycobacterium avium: observation of multiple 23S rDNA mutations in a clonal population. J Infect Dis 1996; 174: 354-60.
28. Meier A, Kirschner P, Springer B, et al. Identification of mutations in 23S rRNA gene of clarithromycin-resistant Mycobacterium intracellulare. Antimicrob Agents Chemother 1994; 8: 381-4
29. Moore RD, Chaisson RE. Natural history of opportunistic disease in an HIV-infected urban clinical cohort. Ann Intern Med 1996; 124: 633-42.
30. Nash KA, Inderlied CB. Genetic basis of macrolide resistance in Mycobacterium avium isolated from patients with disseminated disease. Antimicrob Agents Chemother 1995; 39: 2625-30.
31. Nash KA, Inderlied CB. Rapid detection of mutations associated with macrolide resistance in Mycobacterium avium complex. Antimicrob Agents Chemother 1996; 40: 1748-50.
32. nd ed. Tentative standard M24-A. Wayne, PA: NCCLS, 2002.
33. Peterson EM, Lu R, Floyd C, Nakasone A, Friedly G, de la Maza LM. Direct identification of Mycobacterium tuberculosis, Mycobacterium avium, and Mycobacterium intracellulare from amplified primary cultures in BACTEC media using DNA probes. J Clin Microbiol 1989; 27: 1543-7.
34. Swanson DS, Pan X, Kline MW, et al. Genetic diversity among Mycobacterium avium complex strains recovered from children with and without human immunodeficiency virus infection. J Infect Dis 1998; 178: 776-82.
35. Telenti A, Marchesi F, Balz M, Bally F, Böttger EC, Bodmer T. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol 1993; 31: 175-8.
36. Thiermann S, Munzinger J, Bodmer T. Comparison of phenotypic and genotypic methods for the detection of clarithromycin resistance in Mycobacterium avium. J Antimicrob Chemother 2002; 49: 679-81.
37. Thierry D, Vincent V, Clement F, Guesdon JL. Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J Clin Microbiol 1993; 31: 1048-54.
38. Weisblum B. Erythromycin resistance by ribosome modification. Antimicrob Agents Chemother 1995; 39: 577-85.