Klebsiella alba sp. nov., a novel pesticide-tolerant bacterium from a heavily polluted environment

Journal of General and Applied Microbiology

Volumn 56, Issue 3, 2010, Pages 241-247

  Xu, Junfeng ^a   Li, Wenjun ^b   Chen, Xiaoyun ^a   Zhou, Yu ^a,b  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

16S rRNA gene; Klebsiella alba; Polluted environment; Polyphasic taxonomy; RpoB gene

Indexed keywords

ATRAZINE; BACTERIAL DNA; CHLORPYRIFOS; FATTY ACID; RNA 16S; RNA POLYMERASE BETA SUBUNIT;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA RECOMBINATION; GENETIC ANALYSIS; GRAM NEGATIVE FACULTATIVELY ANAEROBIC RODS; KLEBSIELLA; KLEBSIELLA ALBA; KLEBSIELLA GRANULOMATIS; KLEBSIELLA PNEUMONIAE; KLEBSIELLA SINGAPORENSIS; MOLECULAR PHYLOGENY; NEIGHBOR JOINING METHOD; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PESTICIDE RESISTANCE; PHENOTYPIC VARIATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL POLLUTION; STRAIN DIFFERENCE;

BASE SEQUENCE; DRUG RESISTANCE, BACTERIAL; KLEBSIELLA; MOLECULAR SEQUENCE DATA; PESTICIDES; PHENOTYPE; PHYLOGENY; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); KLEBSIELLA; KLEBSIELLA GRANULOMATIS; KLEBSIELLA PNEUMONIAE; KLEBSIELLA SINGAPORENSIS; NEGIBACTERIA;

EID: 77954733573     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.241     Document Type: Article

References (26)

1. Brenner, D. J. and Falkow, S. (1971) Molecular relationships among members of the Enterobacteriaceae. Adv. Genet., 16, 81-118.
2. Carter, J. S., Bowden, F. J., Bastian, I., Myers, G. M., Sriprakash, K. S., and Kemp, D. J. (1999) Phylogenetic evidence for reclassifi cation of Calymmatobacterium granulomatis as Klebsiella granulomatis comb. nov. Int. J. Syst. Bacteriol., 49, 1695-1700.
3. Doronina, N. V., Trotsenko, Y. A., Krausova, V. I., Boulygina, E. S., and Tourova, T. P. (1998) Methylopila capsulata gen. nov., sp. nov., a novel non-pigmented aerobic facultatively methylotrophic bacterium. Int. J. Syst. Bacteriol., 48, 1313-1321.
4. Drancourt, M., Bollet, C., Carta, A., and Rousselier, P. (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int. J. Syst. Evol. Microbiol., 51, 925-932.
5. Felsenstein, J. (1985) Conference limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-789.
6. Gerhardt, P., Murray, R. G. E., Wood, W. A., and Krieg, N. R. (1994) Methods for General Molecular Bacteriology, American Society for Microbiology, Washington, DC.
7. Hall, T. A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser., 41, 95-98.
8. Huss, V. A. R., Festl, H., and Schleifer, K. H. (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst. Appl. Microbiol., 4, 184-192.
9. Jahnke, K. D. (1992) BASIC computer program for evaluation of spectroscopic DNA renaturation data from GILFORD SYSTEM 2600 spectrophotometer on a PC/XT/AT type personal computer. J. Microbiol. Methods, 15, 61-73.
10. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J. Mol. Evol., 16, 111-120.
11. Kimura, M. (1983) The Neutral Theory of Molecular Evolution, Cambridge University Press, Cambridge, pp.1-384.
12. Kumar, S., Tamura, K., and Nei, M. (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform., 5, 150-163.
13. Ley, J. D., Cattoir, H., and Reynaerts, A. (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem., 12, 133-142.
14. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E., and Jiang, C. L. (2007) Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int. J. Syst. Evol. Microbiol., 57, 1424-1428.
15. Li, X., Zhang, D., Chen, F., Ma, J., Dong, Y., and Zhang, L. (2004) Klebsiella singaporensis sp. nov., a novel isomaltuloseproducing bacterium. Int. J. Syst. Evol. Microbiol., 54, 2131-2136.
16. Mandel, M. and Marmur, J. (1968) Use of ultraviolet absorbance temperature profi le for determining the guanine plus cytosine content of DNA. Methods Enzymol., 12B, 195-206.
17. Marmur, J. (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol., 3, 208-218.
18. Ørskov, I. (1984) Genus Klebsiella Trevisan 1885, 105AL. In Bergey's Manual of Systematic Bacteriology, Vol. 1, ed. by Krieg, N. R. and Holt, J. G., Baltimore, Williams and Wilkins, pp.461-465.
19. Sasser, M. (1990) Identifi cation of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note No. 101, MID hydrolyzed ark, DE.
20. Spierings, G., Silfhout, A. V., Hofstra, H., and Tommassen, J. (1992) Identifi cation of Klebsiella pneumoniae by DNA hybridization and fatty acid analysis. Int. J. Syst. Bacteriol., 42, 252-256.
21. Stackebrandt, E. and Goebel, B. M. (1994) Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species defi nition in bacteriology. Int. J. Syst. Bacteriol., 44, 846-849.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 24, 4876-4888.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., and Truper, H. G. (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
24. Yamaguchi, S. and Yokoe, M. (2000) A novel protein-deamidating enzyme from Chryseobacterium proteolyticum sp. nov., a newly isolated bacterium from soil. Appl. Environ. Microbiol., 66, 3337-3343.
25. Zhou, Y., Dong, J., Wang, X., Huang, X., Zhang, K., Zhang, Y., Guo, Y., Lai, R., and Li, W. (2007) Chryseobacterium fl avum sp. nov., isolated from a polluted soil. Int. J. Syst. Evol. Microbiol., 57, 1765-1769.
26. Zhou, Y., Wei, W., Wang, X., Xu, L., and Lai, R. (2009) Azospirillum palatum sp. nov., isolated from forest soil in Zhejiang province, China. J. Gen. Appl. Microbiol., 55, 1-7.