Rhodoplanes serenus sp. nov., a purple non-sulfur bacterium isolated from pond water

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 3, 2009, Pages 531-535

  Okamura, Keiko ^a   Kanbe, Toshio ^b   Hiraishi, Akira ^a  

^a TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

^b NAGOYA UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; BACTERIOCHLOROPHYLL A; CAROTENOID; HYDROGEN; LAKE WATER; PYRUVIC ACID; RNA 16S; SULFIDE; THIOSULFATE; UBIDECARENONE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL MEMBRANE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; CULTURE MEDIUM; DENITRIFYING BACTERIUM; DNA DNA HYBRIDIZATION; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOLITHOTROPH; PHOTOTROPHIC BACTERIUM; PHYLOGENY; PIGMENTATION; PRIORITY JOURNAL; RHODOPLANES SERENUS; RNA SEQUENCE; TYPE STRAIN;

ALPHAPROTEOBACTERIA; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; GENES, RRNA; JAPAN; MOLECULAR SEQUENCE DATA; NITRATES; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHOTOTROPHIC PROCESSES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); RHODOPLANES;

EID: 70350694180     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.000174-0     Document Type: Article

References (18)

1. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
2. Hanada, S., Hiraishi, A., Shimada, K & Matsuura, K (1995). Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement. Int J Syst Bacteriol 45, 676-681.
3. Hiraishi, A. (1992). Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15, 210-213.
4. Hiraishi, A. & Hoshino, Y. (1984). Distribution of rhodoquinone in Rhodospirillaceae and its taxonomic implications. J Gen Appl Microbiol 30, 435-448.
5. Hiraishi, A. & Ueda, Y. (1994). Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. Int J Syst Bacteriol 44, 665-673.
6. Hirais1hi, A., Yonemitsu, Y., Matsushita; M, Shin, Y. K., Kuraishi, H. & Kawahara, K. (2002). Characterization of Porphyrobacter sanguineus sp. nov., an aerobic bacteriochlorophyll-containing bacterium capable of degrading biphenyl and dibenzofuran. Arch Microbiol 178, 45-52.
7. Hisada, T., Okamura, K & Hiraishi, A. (2007). Isolation and characterization of phototrophic purple nonsulfur bacteria from Chloroflexus and cyanobacterial mats in hot springs. Microbes Environ 22, 405-411.
8. Imhoff, J. F. & Caumette, P. (2004). Recommended standards for the description of new species of anoxygenic phototrophic bacteria. Int J Syst Evol Microbiol 54, 1415-1421.
9. Imhoff, J. F., Hiraishi, A. & Süling, J. (2005). Anoxygenic phototrophic purple bacteria. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, pp. 119-132. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
10. Janssen, P. H. & Harfoot, C. G. (1991). Rhodopseudomonas rosea sp. nov., a new purple nonsulfur bacteriurn. Int J Syst Bacteriol 41, 26-30.
11. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
12. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
13. Matsuzawa, Y., Kanbe, T., Suzuki, J. & Hiraishi, A. (2000). Ultrastructure of the acidophilic aerobic photosynthetic bacterium Acidiphilium rubrum. Curr Microbiol 40, 398-401.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Okamura, K, Hisada, T. & Hiraishi, A. (2007). Characterization of thermotolerant purple nonsulfur bacteria isolated from hot-spring Chloroflexus mats and the reclassification of "Rhodopseudomonas cryptolactis" Stadtwald-Demchick et al. 1990 as Rhodoplanes cryptolactis nom. rev., comb. nov. J Gen Appl Microbiol 53, 357-361.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Stadtwald-Demchick R, Turner, F. R. & Gest H. (1990). Rhodopseudomonas cryptolactis, sp. nov., a new thermotolerant species of budding phototrophic bacteria. FEMS Microbiol Lett 71, 117-121.
18. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.