Curvibacter fontana sp. nov., a microaerobic bacteria isolated from well water

Journal of General and Applied Microbiology

Volumn 56, Issue 3, 2010, Pages 267-271

  Ding, Linxian ^a,b   Yokota, Akira ^b  

^a ZHEJIANG NORMAL UNIVERSITY   (China)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Bacterial isolates from well water; Curvibacter fontana sp. nov.

Indexed keywords

FATTY ACID; GENOMIC DNA; RNA 16S; UBIQUINONE; WELL WATER;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; COMAMONADACEAE; CONTROLLED STUDY; CURVIBACTER FONTANA; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; GENETIC DISTANCE; JAPAN; MICROBIAL DIVERSITY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; WATER ANALYSIS;

BASE SEQUENCE; COMAMONADACEAE; FRESH WATER; MOLECULAR SEQUENCE DATA; PHYLOGENY; WATER MICROBIOLOGY; WATER SUPPLY;

BACTERIA (MICROORGANISMS); CURVIBACTER;

EID: 77954697562     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.267     Document Type: Article

References (19)

1. Bruland, N., Bathe, S., Willems, A., and Steinbüchel, A. (2009) Pseudorhodoferax soli gen. nov., sp. nov. and Pseudorhodoferax caeni sp. nov., two members of the class Betaproteobacteria belonging to the family Comamonadaceae. Int. J. Syst. Evol. Microbiol., 54, 2223-2230.
2. Ding, L. and Yokota, A. (2004) Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov.Curvibacter lanceolatus comb. nov., Curvibacter delicates comb. nov., and Herbaspirillum autotrophicum comb. nov. Int. J. Syst. Evol. Microbiol., 54, 2223-2230.
3. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
4. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
5. Heulin, T., Barakat, M., Christen, R., Lesourd, M., Sutra, L., De Luca, G., and Achouak, W. (2003) Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. in Tunisia. Int. J. Syst. Evol. Microbiol., 53, 589-594.
6. Kaprelyants, A. S. and Kell, D. B. (1992) Rapid assessment of bacterial viability and vitality by rhodamine 123 and flow cytometry. J. Appl. Bacteriol., 72, 410-422.
7. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
8. Krieg, N. R. (1984) Genus Aquaspirillum Hylemon, Wells, Krieg and Jannasch 1973, 361AL. In Bergey's Manual of System atic Bacteriology, Vol. 1, ed. by Krieg, N. R. and Holt, J. G., Williams and Wilkins, Baltimore, pp. 72-90.
9. Leifson, E. (1962) The bacterial flora of distilled and stored water. III. New species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas. Int. Bull. Bacteriol. Nomencl. Taxon., 12, 161-170.
10. Mesbah, M., Premachandran, U., and Whitman, W. B. (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol., 39, 159-167.
11. Meyer, S. A. and Schleifer, K.-H. (1978) Deoxyribonucleic acid reassociation in the classification of coagulase positive staphylococci. Arch. Microbiol., 117, 183-188.
12. Ryu, S. H., Lee, D. S., Park, M., Wang, Q., Jang, H. H., Park, W., and Jeon, C. O. (2008) Caenimonas koreensis gen. nov., sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol., 58, 1064-1068.
13. Saitou, N. and Nei, M. (1987) The neighbor-joining methods, a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425
14. Sakane, T. and Yokota, A. (1994) Chemotaxonomic investigation of heterotrophic, aerobic and microaerophilic spirilla, the genera Aquaspirillum, Magnetospirillum and Oceanospirillum. Syst. Appl. Microbiol., 17, 128-134.
15. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
16. Sasser, M. (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note, 101, MIDI, Inc., Newark, DE.
17. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
18. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., and Trüper, H. G. (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol., 37, 463-464.
19. Willems, A., De Ley, J., Gillis, M., and Kersters, K. (1991) Comamonadaceae, a new family encompassing the acidovorans ribosomal RNA complex, including Variovorax paradoxus gen. nov., comb. nov. for Alcaligenes paradoxus (Davis 1969). Int. J. Syst. Bacteriol., 41, 445-450.