Web-based graphical querying of databases through an ontology: The Wonder system

Proceedings of the ACM Symposium on Applied Computing

Volumn , Issue , 2010, Pages 1388-1395

  Calvanese, Diego ^a   Keet, C Maria ^a   Nutt, Werner ^a   Rodríguez Muro, Mariano ^a   Stefanoni, Giorgio ^a  

^a FREE UNIVERSITY OF BOZEN BOLZANO   (Italy)

Author keywords

bioinformatics; graphical query interface; ontology based data access; semantic web

Indexed keywords

BUILDING BLOCKES; DATA ACCESS; GENOMICS DATABASE; GRAPHICAL QUERY; HORIZONTAL GENE TRANSFER; INFORMATION NEED; LARGE AMOUNTS OF DATA; ONTOLOGY-BASED; OWL ONTOLOGIES; QUERY FORMULATION; REASONER; RELATIONAL DATA; TRIPLE STORE; USABILITY REQUIREMENTS; WEB FORMS;

BIOINFORMATICS; DATABASE SYSTEMS; GENE TRANSFER; INFORMATION TECHNOLOGY; ONTOLOGY; SEMANTICS;

SEMANTIC WEB;

EID: 77954694175     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1774088.1774384     Document Type: Conference Paper

References (24)

1. A. Acciarri et al. QuOnto: Querying Ontologies. In Proc. of AAAI 2005, pages 1670-1671, 2005.
2. A. Amoroso, G. Esposito, D. Lembo, P. Urbano, and R. Vertucci. Ontology-based data integration with MASTRO-I for configuration and data management at SELEX Sistemi Integrati. In Proc. of SEBD 2008, pages 81-92, 2008.
3. M. Angelaccio, T. Catarci, and G. Santucci. QBD*: A graphical query language with recursion. IEEE Trans. on Software Engineering, 16(10):1150-1163, 1990.
4. N. Athanasis, V. Christophides, and D. Kotzinos. Generating on the fly queries for the semantic web: The ICS-FORTH graphical RQL interface (GRQL). In Proc. of ISWC, pages 486-501, 2004.
5. F. Baader, D. Calvanese, D. McGuinness, D. Nardi, and P. F. Patel-Schneider, editors. The Description Logic Handbook. Cambridge University Press, 2003.
6. S. Bechhofer, R. Möller, and P. Crowther. The DIG description logic interface. In Proc. of DL 2003, volume 81 of CEUR, ceur-ws.org, pages 196-203, 2003.
7. D. Calvanese, G. De Giacomo, D. Lembo, M. Lenzerini, and R. Rosati. Data complexity of query answering in description logics. In Proc. of KR 2006, pages 260-270, 2006.
8. D. Calvanese, G. De Giacomo, D. Lembo, M. Lenzerini, and R. Rosati. EQL-Lite: Effective first-order query processing in description logics. In Proc. of IJCAI 2007, 2007.
9. D. Calvanese, G. De Giacomo, D. Lembo, M. Lenzerini, and R. Rosati. Tractable reasoning and efficient query answering in description logics: The DL-Lite family. J. of Automated Reasoning, 39(3):385-429, 2007.
10. D. Calvanese and M. Rodríguez. Towards an open framework for Ontology Based Data Access with Protégé and DIG 1.1. In Proc. of OWLED 2008, 2008.
11. A. Fadhil and V. Haarslev. OntoVQL: a graphical query language for OWL ontologies. In Proc. of DL'07, 2007. Bressanone, Italy.
12. S. Garcia-Vallvé, E. Guzman, M. Montero, and A. Romeu. HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. Nucleic Acids Research, 31(1):187-189, 2003.
13. C. M. Keet, R. Alberts, A. Gerber, and G. Chimamiwa. Enhancing web portals with Ontology-Based Data Access: the case study of South Africa's Accessibility Portal for people with disabilities. In Proc. of OWLED 2008, 2008.
14. C. Nyulas, M. OConnor, and S. Tu. DataMaster - a plug-in for importing schemas and data from relational databases into Protégé. In Proc. of Protégé 2007, 2007. Stanford Medical Informatics.
15. M. W. v. Passel et al. Phylogenetic validation of horizontal gene transfer? Nature Genetics, 36(10):1028, 2004.
16. M. W. v. Passel et al. Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences. Bioinformatics, 21(13):3053-3055, 2005.
17. A. Poggi et al. Linking data to ontologies. J. on Data Semantics, X:133-173, 2008.
18. A. Poggi, M. Rodriguez, and M. Ruzzi. Ontology-based database access with DIG-Mastro and the OBDA Plugin for Protégé. In K. Clark and P. F. Patel-Schneider, editors, Proc. of OWLED 2008 DC, 2008.
19. Racer Systems GmbH & Co. KG. Release notes for racerpro 1.9.2 beta. Website, Last access, July 2008. http://www.sts.tu-harburg.de/~r.f.moeller/ racer/Racer-1-9-2-beta-Release-Notes/release-notes-1-9-2se8.html.
20. M. Rodríguez-Muro and D. Calvanese. An OBDA extension to the DIG 1.1 Interface. Website, July 2008. http://obda.inf.unibz.it/dig-11-obda/.
21. M. Rodríguez-Muro, L. Lubyte, and D. Calvanese. Realizing Ontology Based Data Access: A plugin for Protégé. In Proc. of the ICDE Workshop IIMAS 2008. IEEE CS Press, 2008.
22. A. Ruttenberg et al. Advancing translational research with the Semantic Web. BMC Bioinformatics, 8(Suppl 3):S2, 2007.
23. P. R. Smart et al. A visual approach to semantic query design using a web-based graphical query designer. In Proc. of EKAW 2008, 2008.
24. B. Smith et al. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology, 25(11):1251-1255, 2007.